mRNA_P-littoralis_Contig83.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig83.4.1
Unique NamemRNA_P-littoralis_Contig83.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig83.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig83contigP-littoralis_Contig83:6946..8859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size793
Hectar predicted targeting categoryother localisation
Exons2
Cds size603
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791687.5487242-CDS-P-littoralis_Contig83:6945..75481680791687.5487242-CDS-P-littoralis_Contig83:6945..7548Pylaiella littoralis U1_48CDSP-littoralis_Contig83 6946..7548 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791687.558579-UTR-P-littoralis_Contig83:7548..76081680791687.558579-UTR-P-littoralis_Contig83:7548..7608Pylaiella littoralis U1_48UTRP-littoralis_Contig83 7549..7608 -
1680791687.5688279-UTR-P-littoralis_Contig83:8730..88591680791687.5688279-UTR-P-littoralis_Contig83:8730..8859Pylaiella littoralis U1_48UTRP-littoralis_Contig83 8731..8859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig83.4.1prot_P-littoralis_Contig83.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig83 6946..7548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig83.4.1

>prot_P-littoralis_Contig83.4.1 ID=prot_P-littoralis_Contig83.4.1|Name=mRNA_P-littoralis_Contig83.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=201bp
MVDVEEQRKEDDGVTSSSGVGSGSAAGLVTGGNAGTAGGAREKLPEMPER
WLYPHLIMACAWSPSSGNTPPEWKNLCASGGKPEALKEEDKLDTGSNPLS
SPAAMAAAASARKMLNNNGDSSSRRQTEAAAKAEAGRLRRAQKDKQKMAL
MKETEVTRKKGVAAMEEINVNAVQLNNHMKRMVELREAETNLKKDEAQAA
K
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mRNA from alignment at P-littoralis_Contig83:6946..8859-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig83.4.1 ID=mRNA_P-littoralis_Contig83.4.1|Name=mRNA_P-littoralis_Contig83.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1914bp|location=Sequence derived from alignment at P-littoralis_Contig83:6946..8859- (Pylaiella littoralis U1_48)
CATTCGGCAGCAGCTGCCGCCGCGACCGCTCCTGAAAGGGGGGCTCCGGA
GGCCGAGAGCGATGGCGTGGGACCAAAGCCAAAATGCCACTGCAACAAGG
ATTGCCAGATTGGCACTTTGAAAGACGTGGTGCGTATCGGAATTGCGAAT
TGTACATTTTTACGGCCCCCTCATCGTGACTCTTGAAAGGAGGTAATTGC
CTCGAACTAAACACGAAGGTGATCGTTCGTGGTGTTGTTCGCGTTGTGGG
TTTGACGCATGTGTGGAGAGAAGAACGGATGGAACGCATTCAGGGGCAAG
CTTGATATCTGTGATAAACCCGTTCGGCGTATAGCGTGGTGTACTTAGGT
ACGCCGTTGCCTTCACGTGTATACTGAACGTTAATTTGTACACAGGTGTG
TGCGACAAAGATAGTACGAGGTTTCCACCAGAAAAATGACTTTAAATAAT
TGCGTCAAATTCTTGCTCTTCCTCGAGTGACGGTTGCAATTATTGCTTTT
CCGCTTGTAACGCTTGGCAGTGTTGAACACCACAGACCACGAATAAAAAA
AGGAGACCCAGAGACGAAATTCTTGCTCTTCCTCGAGTGACGGTTGCAAT
TATTGCTTTTCCGCTTGTAACGCTTGGCAGTGTTGAACACCACAGACCAC
GAATAAAAAAAGGAGACCCAGAGACGAAGAGTCTGGTGTTTGGTCTAGAA
AATAACGTCGTTTGGAGCGCTAGTGGAGTGATTTTTCTTCTGGTTGACCA
CCGAAAAACAGCAGCAACACACACAACGGAAGACAGCACGGCACATGCCG
CAGTAGTACAGCTCTGTATATTGGGTGTGTGTGGGTGCCTGCGTATCGCA
CACACAGATTGATGCTTCTGCGAAGCATACATTTATGTTGTTGAGAGCAG
GCACAGCAGCAGCAACAAAACACAAAACAACAGCAGTCGGAAGAAGAGGC
GATTGCGCCACACCTCTCATAAGCCGAGGTCATGTCGCATGTCACTCACA
CACAAACAGGGGCGACAGAGTAGACAGCACAGTGCAGCAGTATATCACAG
GAGCCGCGCAACTGTACGGTGCAGCGGCAGGTGCAGCAGTGAAGCAGTTA
AGTGTTTGTGTGCCAAGAAGTTGTAATGAATTCTTAGGTGTTATCCCATG
TGTCCGTGACCGCAGCTTCATGCAGATGGGAGCGTCACCAACATGATAAC
TCATGACTCCCACCGCTCGTTCCACCCCTTCCGCAATTCCCTGTTGCGCA
GACCTCAGGAACTTCAAGGCAGGTCTGAGATTGTGCGGACGTGCTTGACG
GGTGCGATTTCATGGTCGATGTCGAGGAACAGAGGAAGGAAGATGACGGC
GTTACCTCAAGCAGTGGCGTTGGCAGTGGATCAGCGGCGGGTCTCGTCAC
CGGTGGCAATGCTGGGACTGCGGGTGGTGCCAGGGAGAAGTTGCCGGAGA
TGCCTGAGAGGTGGTTGTACCCGCATCTCATTATGGCATGTGCCTGGTCC
CCCTCGAGCGGGAACACCCCGCCCGAGTGGAAAAACCTGTGTGCGTCCGG
CGGGAAACCCGAGGCGTTGAAGGAAGAAGATAAGCTGGACACGGGGTCAA
ACCCACTCTCCAGCCCCGCAGCGATGGCCGCGGCCGCATCGGCGCGCAAA
ATGCTCAACAACAATGGTGATTCCTCGAGTCGTCGCCAGACCGAAGCAGC
AGCGAAAGCGGAGGCTGGTCGGCTTCGCAGGGCCCAGAAGGACAAACAGA
AAATGGCGCTCATGAAAGAGACAGAGGTGACGAGGAAGAAGGGTGTCGCA
GCCATGGAAGAGATAAATGTCAACGCGGTGCAGCTAAACAACCACATGAA
GCGGATGGTGGAGCTTCGGGAAGCCGAAACTAATCTCAAGAAGGACGAGG
CCCAGGCGGCGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig83:6946..8859-

>mRNA_P-littoralis_Contig83.4.1 ID=mRNA_P-littoralis_Contig83.4.1|Name=mRNA_P-littoralis_Contig83.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=603bp|location=Sequence derived from alignment at P-littoralis_Contig83:6946..8859- (Pylaiella littoralis U1_48)
ATGGTCGATGTCGAGGAACAGAGGAAGGAAGATGACGGCGTTACCTCAAG
CAGTGGCGTTGGCAGTGGATCAGCGGCGGGTCTCGTCACCGGTGGCAATG
CTGGGACTGCGGGTGGTGCCAGGGAGAAGTTGCCGGAGATGCCTGAGAGG
TGGTTGTACCCGCATCTCATTATGGCATGTGCCTGGTCCCCCTCGAGCGG
GAACACCCCGCCCGAGTGGAAAAACCTGTGTGCGTCCGGCGGGAAACCCG
AGGCGTTGAAGGAAGAAGATAAGCTGGACACGGGGTCAAACCCACTCTCC
AGCCCCGCAGCGATGGCCGCGGCCGCATCGGCGCGCAAAATGCTCAACAA
CAATGGTGATTCCTCGAGTCGTCGCCAGACCGAAGCAGCAGCGAAAGCGG
AGGCTGGTCGGCTTCGCAGGGCCCAGAAGGACAAACAGAAAATGGCGCTC
ATGAAAGAGACAGAGGTGACGAGGAAGAAGGGTGTCGCAGCCATGGAAGA
GATAAATGTCAACGCGGTGCAGCTAAACAACCACATGAAGCGGATGGTGG
AGCTTCGGGAAGCCGAAACTAATCTCAAGAAGGACGAGGCCCAGGCGGCG
AAG
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