mRNA_P-littoralis_Contig83.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig83.1.1
Unique NamemRNA_P-littoralis_Contig83.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig83.1.1 vs. uniprot
Match: A0A6H5L174_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L174_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.670e-20
Identity = 50/89 (56.18%), Postives = 62/89 (69.66%), Query Frame = 2 
Query:  227 AMVAKRRSMTARPDGAAVEGEEDAIFDEPMVGEELEGLMGEPPSVSNESALALISKK*ATTHPETIRDFIADTAARLAIGSGCVDEAPL 493
            A+ +   SMTAR  GAA EGE D IFD+P+VGEE+EGLMG+PPSVS++  LA + K  A   PET+R FI + A  LAIG+GC    PL
Sbjct:   50 AIESPEXSMTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAVRKH-AIESPETVRAFIKERARSLAIGAGCPHSLPL 137
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BLAST of mRNA_P-littoralis_Contig83.1.1 vs. uniprot
Match: A0A6H5KC02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC02_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 3.150e-20
Identity = 48/82 (58.54%), Postives = 59/82 (71.95%), Query Frame = 2 
Query:  248 SMTARPDGAAVEGEEDAIFDEPMVGEELEGLMGEPPSVSNESALALISKK*ATTHPETIRDFIADTAARLAIGSGCVDEAPL 493
            SMTAR  GAA EGE D IFD+P+VGEE+EGLMG+PPSVS++  LA + K  A   PET+R FI + A  +AIG+GC    PL
Sbjct:   10 SMTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAVRKH-AIESPETVRAFIKERARSVAIGAGCPHSLPL 90
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BLAST of mRNA_P-littoralis_Contig83.1.1 vs. uniprot
Match: A0A6H5KC65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC65_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.580e-20
Identity = 49/82 (59.76%), Postives = 59/82 (71.95%), Query Frame = 2 
Query:  248 SMTARPDGAAVEGEEDAIFDEPMVGEELEGLMGEPPSVSNESALALISKK*ATTHPETIRDFIADTAARLAIGSGCVDEAPL 493
            SMTAR  GAA EGE D IFD+P+VGEE+EGLMG+PPSVS++  LA + K  A   PET+R FI + A  LAIG+GC    PL
Sbjct:   53 SMTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAVRKH-AIESPETVRAFIKERARSLAIGAGCPHSLPL 133
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BLAST of mRNA_P-littoralis_Contig83.1.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.220e-18
Identity = 53/84 (63.10%), Postives = 62/84 (73.81%), Query Frame = 2 
Query:  251 MTARPDGAAVEGEEDAIFDEPM--VGEELEGLMG-EPPSVSNESALALISKK*ATTHPETIRDFIADTAARLAIGSGCVDEAPL 493
            MTARPDGAA EG ED +FD+P+  VGEELEGL+   PPS S+   LA+I++  A   PETIRDFI +TAARLA  SGC  EAPL
Sbjct:    1 MTARPDGAAEEGGEDTLFDDPVEVVGEELEGLLRLSPPSTSSTPVLAIITQH-AIDSPETIRDFIEETAARLAKESGCQHEAPL 83
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BLAST of mRNA_P-littoralis_Contig83.1.1 vs. uniprot
Match: A0A6H5J8W1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W1_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.080e-13
Identity = 43/79 (54.43%), Postives = 53/79 (67.09%), Query Frame = 2 
Query:  206 PLRTNDSAMVAKRRSMTARPDGAAVEGEEDAIFDEPMVGEELEGLMGEPPSVSNESALALISKK*ATTHPETIRDFIAD 442
            PL    S   A   SMTAR  G+A EGE D IFD+P+VGEE+EGLMG+PPSVS++  LA + K  A   PET+R FI +
Sbjct:  679 PLNRCSSGGAAAPGSMTARSRGSAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAVRKH-AIESPETVRAFIKE 756
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BLAST of mRNA_P-littoralis_Contig83.1.1 vs. uniprot
Match: A0A6H5JL74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL74_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 7.140e-8
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 2 
Query:  251 MTARPDGAAVEGEEDAIFDEPMVGEELEGLMGEPPS 358
            MTAR  GAA EGE D IFD+P+VGEE+EGLMG+PPS
Sbjct:    1 MTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPS 36
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig83.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L174_9PHAE2.670e-2056.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC02_9PHAE3.150e-2058.54Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC65_9PHAE3.580e-2059.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHG3_9PHAE1.220e-1863.10Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8W1_9PHAE4.080e-1354.43Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JL74_9PHAE7.140e-875.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig83contigP-littoralis_Contig83:1703..2196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size494
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size171
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791687.4485714-UTR-P-littoralis_Contig83:1702..17961680791687.4485714-UTR-P-littoralis_Contig83:1702..1796Pylaiella littoralis U1_48UTRP-littoralis_Contig83 1703..1796 -
1680791687.4744818-UTR-P-littoralis_Contig83:1967..21961680791687.4744818-UTR-P-littoralis_Contig83:1967..2196Pylaiella littoralis U1_48UTRP-littoralis_Contig83 1968..2196 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791687.45935-CDS-P-littoralis_Contig83:1796..19671680791687.45935-CDS-P-littoralis_Contig83:1796..1967Pylaiella littoralis U1_48CDSP-littoralis_Contig83 1797..1967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig83.1.1prot_P-littoralis_Contig83.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig83 1797..1967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig83.1.1

>prot_P-littoralis_Contig83.1.1 ID=prot_P-littoralis_Contig83.1.1|Name=mRNA_P-littoralis_Contig83.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=57bp
MVAKRRSMTARPDGAAVEGEEDAIFDEPMVGEELEGLMGEPPSVSNESAL
ALISKK*
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mRNA from alignment at P-littoralis_Contig83:1703..2196-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig83.1.1 ID=mRNA_P-littoralis_Contig83.1.1|Name=mRNA_P-littoralis_Contig83.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=494bp|location=Sequence derived from alignment at P-littoralis_Contig83:1703..2196- (Pylaiella littoralis U1_48)
GCTGGGACTGCAACCAGGGCTGTGATACTGCCACGCAACAAGCGCGGAGG
TGAAACAAACGGAGTCTAGCACTAGTCCAGATGCGAAGCGGACGCGCAAG
TCCACACACGTACACCAAAGCTTCTCCCACAAAAGAGAGGTAGACGCAAC
GGAACAGCAGAAAGAGGCAGCAGCAGCAGCAGCAGCAGCAGCTCGCGGGA
GAGCGCCATTGCGGACCAACGACTCAGCCATGGTGGCTAAGCGGCGCTCC
ATGACCGCACGCCCCGATGGTGCTGCAGTGGAGGGCGAGGAGGATGCCAT
ATTTGACGAGCCCATGGTGGGGGAGGAGCTAGAGGGTTTGATGGGAGAGC
CGCCGAGTGTCAGCAATGAATCCGCACTGGCTCTCATCAGCAAGAAGTAG
GCCACGACCCACCCCGAGACCATCCGCGACTTCATCGCGGATACAGCTGC
TCGGCTTGCGATCGGATCCGGTTGTGTAGACGAGGCGCCGCTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig83:1703..2196-

>mRNA_P-littoralis_Contig83.1.1 ID=mRNA_P-littoralis_Contig83.1.1|Name=mRNA_P-littoralis_Contig83.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=171bp|location=Sequence derived from alignment at P-littoralis_Contig83:1703..2196- (Pylaiella littoralis U1_48)
ATGGTGGCTAAGCGGCGCTCCATGACCGCACGCCCCGATGGTGCTGCAGT
GGAGGGCGAGGAGGATGCCATATTTGACGAGCCCATGGTGGGGGAGGAGC
TAGAGGGTTTGATGGGAGAGCCGCCGAGTGTCAGCAATGAATCCGCACTG
GCTCTCATCAGCAAGAAGTAG
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