mRNA_P-littoralis_Contig83.121.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig83.121.2
Unique NamemRNA_P-littoralis_Contig83.121.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig83.121.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig83contigP-littoralis_Contig83:535245..538153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size185
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791687.234788-CDS-P-littoralis_Contig83:535244..5353411680791687.234788-CDS-P-littoralis_Contig83:535244..535341Pylaiella littoralis U1_48CDSP-littoralis_Contig83 535245..535341 +
1680791687.2657056-CDS-P-littoralis_Contig83:538067..5381531680791687.2657056-CDS-P-littoralis_Contig83:538067..538153Pylaiella littoralis U1_48CDSP-littoralis_Contig83 538068..538153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig83.121.2prot_P-littoralis_Contig83.121.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig83 535245..538153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig83.121.2

>prot_P-littoralis_Contig83.121.2 ID=prot_P-littoralis_Contig83.121.2|Name=mRNA_P-littoralis_Contig83.121.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
VKPRRWRSKARRISRHQDHNEYLAPTRLAVTHGSTKQPGQPDRKSGKYTR
TSMAYAAQIE*
back to top

mRNA from alignment at P-littoralis_Contig83:535245..538153+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig83.121.2 ID=mRNA_P-littoralis_Contig83.121.2|Name=mRNA_P-littoralis_Contig83.121.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2909bp|location=Sequence derived from alignment at P-littoralis_Contig83:535245..538153+ (Pylaiella littoralis U1_48)
GTGAAGCCTCGCCGGTGGAGAAGCAAAGCAAGACGGATCTCACGCCACCA
AGACCACAACGAATACTTGGCTCCAACGCGGCTTGCAGTAACCCACGGTG
GGTGGTGCGTTAGGGAACCCTATTTAATTTGATCCAATTTTGCTGAATTT
TGGAATCCTGCAAAGAGCACTCTAAACGTCTCGAAGCAGGGCCATCAGAC
CAGTAGAAAAGGGTTGGGGGCCGAAACAACGGCTGGAAGGTGGTGGATGG
GGCGTTATCGCGACACAAATCTTGTGATTCAGAACTCCGTGATAATTTCG
CCTAATCGAATATCCAAGATGATAACCTCCCCCAGTCTAAATTCAAGACA
AACTAGTGAACACGAGAGGCGCTCGAATGAGACCTGTGGTGTGAATTAAG
CCGGGGTTTCGAATGGTATCAGTAGGGGAAATCACGTAGAAGCGACTTAT
GTGTTGGCTAACTCAGATTTTCTACTGTGGCTGTGTTATCGGTGGTTGGA
AATATGTTGTACAGCAGTCGGGATTCTGTCCAATCTCGGCCCGAGATCAG
ACACCTTGCATGATCTTCCACTGCTTTACTCACCCCCATGGGCCAGGATT
TTGGGTCTACAGCAGCAGTAGCTTATACCACTTGCTGCCTAGGACAACAC
TCAGTTCAGGAGATCGGGGCCCATGGTGGCGAGTACAGCAGTGAAATATC
ATGTAAGATGTTTGGTTTCGGGCTGTGATGCGGACGGTTTTTGGGGTGCT
GCACCACATACCTTCGACCACCGATATCTAAGCCCCGTCAAAAGCTCTGA
GGTTGCCAACACGCACGTCGCCTCTACATTATGTATTCTACTGATATCCA
TATAAAACCCGGCTTAATTCACGCGGGAAGGTCGATTTCTATCTTTGTAC
TAGATGAAGACTGGATGTGCTTTTGAAATTTAGTGGGGTTGAATAGGGTC
CTTTAAGTGGCATGACTGGACGTTTATTGCATACTTCGTATGATATGACA
GACAAGCTGCGCACAAGAAAGTGTGTTTCTAATCGATTTGTAACGGCCGT
ATTTTGAACGCTTCCAGCACACAGCACCCGAAAAATTTGAGCATATGTGT
GTATCGGTAGCCTTATCTGCGCATGCCAGGTGCATGATTTTTCTGCACCT
GAAGGAACGCCTACAGAACTTTACCCAGAAACCCTACTACCGGTACACAA
CCAACGTCCACATTTGTCAGATATTTTTGGAAACAACATAAACCAACGCA
GTACAAGTACTATAGTTATGTGCGTTCCCCGTGCGTGCGAGCAGCAGAGA
AAGAGAAAGAGAGAGCGAAAGCAAACATGCGCGTGATTGCATTATTTGTT
GTGTGTGCGCTGCACTACTGCGGCCGTGCTGTGAGTGTGCTTGTGTGTGC
ACTACGGGTGCCGCTGTACTGCGCGCTAAGTATGTGTGTTGCCTCTGCGG
TACTACTTCTCTGCGCCTACCTTGTTTGCCGTTGTATATTCTCCTTTTCG
TGGTCATGGCGCTGTAGGGACGTTTGAGATTCACTTATCCGAAAGGCCCT
CTTGTAGCGATGTTCTCACCGTCTATACTCGTACAAGGGCGTCTCGGTAC
AGCATATAACGAGCGCACCTATCATAGTGTTGTGTACATATCATACCACT
CTGCAACTCTGTACTGCTGCGTGTTGGACTTCAAACAGCCCGCCCAAGCG
ACGTGGAACAACCAGCAACCCTGGTCGCTAGGGTGCCAAATTTATGTGCC
AAATCTTTAAACAGAGTCCATGTTGAAGAAAAAAACAACCAAAATTTGAA
AGGAGGGACTTTATGATACCCCGAACAGTCGTCAGCTGGCAAAATTTGCT
CTGCGCAAGCACGTTGTTATATTTCATGTTTCGCGGACGACCGCACACAC
ATGAGCAGTCAATAGTAGAGCCATCGACACATTGTTTCATTTCCAGATTG
TGAAACTCTTAGGCTGACACTCTTCACCTCCTCACGGGAGATCGAGAAGC
GGGAGTGTGAACTGCTGGAAAGTTTAAATGTGCGTTTTAGTCAAAAATAG
AACAGACTGACCGTTTTCCCGTTGAGAATGTCGCATCCACAGCAGTCCAA
CTAAGAAATCGATAGAATGTACTGACGGTGTGAGAGACGTCGCACCCCCA
AACAGCAGAATCAGGCAGGCAGAAACATCGTCAGACAGCCCGTGTCCAAA
GTGTAGTCCCCTTTGTGAAAATGTGCATGTGTATTGGATAACATCCTCGG
AACGAACGACCCTGTGATCACTTGCAAGAGTGCGGCTCAGGATCCCTTCC
GCATTTCCCAGATTTATATTCTTGACGTTTCCAATAAATTTTTCAGCTTA
CGAGAGGTACCTCAAGGTTGGTTGGTTTCTCTGTAGCCGGCAGATTTTGT
GTGAGGTATTTCCATAACCGCGCATGACTAATAAATTTCATTGCAGCATG
ATAGAACGAAAACAACCACCTTGCCTGTCTGTGTGTATGTTGTTGTGCTT
TGGCCCAAGGCTCCTTAAGGTCATTGTTCAATTCCGATCCACTTGGATCG
ATTTCAAAAGTTCCTACGAATGGATCAGGAATATGTGCATTTTAATAGTT
TTCTCACTTCTGGTGCCCCCAAAAGGTCTTTCAGACCTCGCGGAATAAAA
TGCAAGAAAAACATCATCTATCATATCAAACCTCTTCATTGTGTCAGCGA
TACAACGCACTCTTAGTAGTTTTGAATATTTAGGCTTTCTGTCTTTCTTT
GTGTTGCTGTCGCTCATGTTTGAATTACGGGGCACCGGATCACATCGCTA
CCCTGATAATGCTTCCTGCGCAGGTTCAACGAAGCAGCCCGGTCAGCCCG
ATAGGAAGAGTGGAAAATATACGAGGACAAGCATGGCGTACGCAGCCCAG
ATCGAATAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig83:535245..538153+

>mRNA_P-littoralis_Contig83.121.2 ID=mRNA_P-littoralis_Contig83.121.2|Name=mRNA_P-littoralis_Contig83.121.2|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig83:535245..538153+ (Pylaiella littoralis U1_48)
GTGAAGCCTCGCCGGTGGAGAAGCAAAGCAAGACGGATCTCACGCCACCA
AGACCACAACGAATACTTGGCTCCAACGCGGCTTGCAGTAACCCACGGTT
CAACGAAGCAGCCCGGTCAGCCCGATAGGAAGAGTGGAAAATATACGAGG
ACAAGCATGGCGTACGCAGCCCAGATCGAATAA
back to top