mRNA_P-littoralis_Contig83.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig83.41.1
Unique NamemRNA_P-littoralis_Contig83.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig83.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig83contigP-littoralis_Contig83:129923..135355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size585
Hectar predicted targeting categoryother localisation
Exons3
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791687.1571407-CDS-P-littoralis_Contig83:129922..1302121680791687.1571407-CDS-P-littoralis_Contig83:129922..130212Pylaiella littoralis U1_48CDSP-littoralis_Contig83 129923..130212 +
1680791687.1747565-CDS-P-littoralis_Contig83:130289..1303461680791687.1747565-CDS-P-littoralis_Contig83:130289..130346Pylaiella littoralis U1_48CDSP-littoralis_Contig83 130290..130346 +
1680791687.1899867-CDS-P-littoralis_Contig83:135117..1352021680791687.1899867-CDS-P-littoralis_Contig83:135117..135202Pylaiella littoralis U1_48CDSP-littoralis_Contig83 135118..135202 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791687.2038984-UTR-P-littoralis_Contig83:135202..1353551680791687.2038984-UTR-P-littoralis_Contig83:135202..135355Pylaiella littoralis U1_48UTRP-littoralis_Contig83 135203..135355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig83.41.1prot_P-littoralis_Contig83.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig83 129923..135202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig83.41.1

>prot_P-littoralis_Contig83.41.1 ID=prot_P-littoralis_Contig83.41.1|Name=mRNA_P-littoralis_Contig83.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp
MCRYHSLYDHICSDPSLWDESAVRALEGTEIKDRKFFFISRQRDNPTLEE
RIRPYYTCPIILLYLPPAHQQISRCSFAQLYEKGVLHRACTSYRERYSGL
TGILTEEEEEGEAGRRHQPTGGYPTGTKRLRSCPASSQDEAHV*
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mRNA from alignment at P-littoralis_Contig83:129923..135355+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig83.41.1 ID=mRNA_P-littoralis_Contig83.41.1|Name=mRNA_P-littoralis_Contig83.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5433bp|location=Sequence derived from alignment at P-littoralis_Contig83:129923..135355+ (Pylaiella littoralis U1_48)
ATGTGCAGATATCATAGCCTCTATGACCACATCTGCAGCGATCCCTCCCT
GTGGGATGAATCAGCAGTACGGGCATTAGAAGGTACTGAGATCAAGGATC
GGAAGTTTTTTTTTATTTCGAGACAACGAGACAACCCGACCCTCGAAGAA
AGGATACGACCATATTATACCTGCCCGATCATCCTGTTGTACTTGCCACC
TGCACACCAGCAGATCAGCAGATGCAGTTTCGCGCAGCTCTACGAAAAGG
GGGTGCTGCACAGGGCATGCACATCCTATCGCGAGCGCTAGCGACCGTGC
ACACCACCGCAACATGGCACGCCACACACTTCTCCCACTTACACATACAA
CAGCAGCACCAGTAAAGTTCTGGACTGACGGGGATTCTCACAGAAGAAGA
GGAGGAGGGAGAAGCAGGGAGACGGTGAGTCTTCGTTGACCGTACGGTAA
GGGAGTCGCCATATTTTCGGATGCTCTCTGTCTGGTCTCTTGTTTCTTAC
AGCAGGAGGAAAGCGCTCAAGAGAGCTCTTGGTCGTAGGTACGTGCTGTC
GAACGCCGCGCGTATACCCTCCATTGCACTCTTGTAGAGAACCACAGCCG
TCGTGAAGTAACTCTACTACCTGTCCCATGTACTTTTTGTACATGAGCGG
GAGCAGCAGTCACAGCAGCGTGGTCATTCGCACCAAAAAATACTTGGGTT
ATAGTCAAAACAGCCTGCTTGTACCAGTATTGGAGTTAGCTCCTCACTGG
ATCTGTCGTCCGTGCGTACGCGATCGCTTACTTCCGATGAGAAGAGAACG
CCATGCATGTCGGCGCGTTCAGATCTGCTGCTGGAAAGGAGGTCTCGAGG
GCCGCAGTACCTCGACCTGTAGATCCAAAACTCCGCAGAATCCTTGAAAA
ACTCCGCAATCTGCAATTTAGAGTGATACCAAACGTTTGATGCGGCTGTA
CTCACCGCCATTTGCCAGCTCCCATTTGCACCAATCTTGTGAAATGCGGT
TCGAGGTATAAGCTTCTGCTGTCGACCCGTAGTTCAGGAGGGTGGGGTGT
GTGGCGGCGGGCACAGCAGTGGAAGATAGCACAGCAGTGTACGATGTTTT
TGGAATCTGTCCAGCTTGCAAACTTTTTCAGCCACCTGCTGCAACCTTCG
ATATCTAAGCCCCTGCAGCAGATCTGAATGCACACGTAGCTTCAACTGAC
GCCCTCAGATCGGAACAGGGCGATCGCGCACGCACTGACGACACCCTTAT
TTGAGCTCGAAATAAGCTACTCTGACTTGATTTTAGATTGGCCGCAGAAA
CTACCTTGATTTTAAAATAGGGGAATGGGGGTAGACATGTGACATGCATG
TCATGAGAAGCCAGGACCACCGCTGTGTGCGACAACGAAAGTTTTTCTTT
CATTGTTCTTGCCCAACGACTCGCTGCAGGTGTGGGCTACCCAGTGCGTG
ATTGTGGGATGCTTCTTGTCTGTTCAGAATTAGTCAATTCTAAAGTTGGT
GGACCGGCAATCCTTAACGAAAAATGTGACACCCGGATTGGAAAGCTCTC
GTTTGTAGACTACATATTAAAAAAATGCTAGCTGTAGTTGGAATTTCTTT
TGAGTGGTCAATCAACTTTCACATCCCACGGGGCTAGCTTTTCCCGCCAA
ACAATCAAATCTGACGAATCGGAATTAGAATGGCCGAGGGAGTTGGTGAG
AGAAACGAAAGGCGGAGTGTGATGAAATGGCTGCAAAATGTGGCGTCTAC
GAGTGCAGCGTAAAGCATTACAGCAGTAGAAATCCAATCAAAAGACCGAC
AATACGTACGTGCGTACGCACGCAGCTATCAGCAAGCAGCTGCTGCTGCT
TCGGGCAGGCCGCACCCACACACCCACACTTACACCCACAATACGCACAC
GGACTCAAAATAATACACACGTCTATTACGTACGTGCCGATGGCTGACAT
GGACCATGAACTATAGCCAGCTGGCAGCGGGTAGTGCCCCGTCTGCTGAG
TTCGGCGCCTCCAGCAGCTTCTCGGCGAACGCAGGGGAACACGTGCGCGT
GAATGTCTTCTGCAGACAGCGGTACAGCAGTATGATGCAAACTTGTTGTT
TGTGCAGTCGGCGCTGGCGTTCAACCACCTGCCAGATGCAGTTGCTTCCT
GGAAGGTTGCTATCATATGTATATCGCATCTTGGGAACGCAGACCAGCTA
CAAATGCCGAACCAATCCCACCGGCCTACGTAGTTGAAAGTTTAAACGAC
ATGGGTATATTTTGCCAAAAGCTAGTACGACTGTCCAATTTGGGCCTGCA
GTCCAGGTGTCACCATTTTCGTTAAAAAAGGCCCTGACCGGTGCTGTATG
ATATCATGATTTTGTATCGTACTTCGAAGAACTGCTGTATCATGCTGGGA
GAAAGAATCATACAACTGAAGGAAGGCCCCACACCATATGATACAACAAA
TAGGGATGCATATCATACCGCCCAAAGGTGGTACCTTATCTTTTGTGGTG
GCTTAAAACAGTGCATGTACAGCAGGAATAACAGAGAGAGAGAGAGTCGA
GCATAAAATAGGAAGGACATCGGCGTGGGACATGACGCGGTCCGACCTTT
TTCGACCCAATGCGTTTTCTTCTGCATTTTTGTGGAAAGGCGTCACACCC
AGCGATAATCGAACTCCCCGCGTATGTTTTGTCCGTTTGATCGAATCATC
TAGTAGACCGCTCAAATCAAGCGGAAAATTAAATACAAGTGCATTTGACG
AACAGTCAGCCCATTCCCTCTTCTCCAGCGGTACAGTAGTTGAATAGTGA
CGAACCGAGTGTCCATCATCTTCCATATTTTCACAGACTTTTTTTTTCCG
AGCTTCAGCTGACTTGATTTCCTTCGTTCACAGCCGACCTCGTGATATGG
ACGTGTGGTACAAAAATCGAAAGTGGAACGATGGGGTGTGAGCTAGAAAC
GTCTGACACAATGTTGAATAAAACCCTGGTAGGACCGTTCAGACGTAAGC
ATTCGTCGCATCTATTTTAGCCTGGCAAGTGCACAACAAGTCGATTTTGC
TGAGTTGTAGCGGGTACGATCGAAACTAATCTGATGGCCCGTGCATGTAT
TATTGATGGTCCGTGACTTTTTTTCGGCTGCTTTTGATGGACACTCGAGC
GAGGAAGGGTCCACCGGTCATCTTTCATTAGGATAAAGCTTTGTGACTTG
TGTGTTTGTTGGTTGTGATATCTTGAGGTAGCGATGCTGATGCTATGTGG
TGGAATTTCCGCCCTGCATCATCACGCAACTTTCCTCGTCATCATACCCC
TTTCTCTCTCTCGAGCCCCCTCCCCCCCATGACCCGAAACAACTTCCTTG
ACTCTTTCAACCACGCAGACCCCCGACCCTTACCCTTTGTACCACGTGTG
GCCAAGGCTCCAGCTACTCCCCTTGACGGAAAGTCCGCCTCGAGCCCTTT
CCCTCGGGGGGCCCCCCAGGGGTGCTGCCCGGTCCGAGAACCGCAAGCTG
TGACGCACAGCACACGAGATGTGTCCTGCTGTACTCACGGCTTGTGGTTG
TCGAGCTGGGCAGCACCCCCAGGGGTTCCCCGTAGGCTGTATATCCATGG
AATTCGTGGCCGTACGCCCTAGGAGAGAGAGAGAGAGAGAAAAGGTGCCC
GCAGTTTTCTGATTGGCCAATTTTTTTTAAAGGAGATTTCTGATTGGCCA
AAAATCCCTGGTTCACATGACGTGTCATCCACGGCGGGTTCACTTTTTTG
TAGAAAACTCCACAATTTTCAATATGGCCGGGGCGTATGTAGCTATGTTG
AAAAATGTGCAGCACGTTTGTCTTCCCGCGATTCCGTTTGCTGGAGTGCT
GCACTAAAACAAAATCCACACGCGATTCCGTTTGCTGGAGTGCTGCACTA
AAACAAAATCCACACGTTGTGCTCACCTCCTAAACAAAGTGCACAGCAAA
TTTTCCTGCGACAGTGTTAGAGGAACAGATGGGGCCCAGACCGTTCCACG
CCCCCGCGCCGCACGCTTCCTGGAGTAGTTGCAGTGAGTACAGGATTTCG
TCATGTGCCCTGCACTTCCCAAATATCGATGCTCGCGGATTTCGTTGTGT
GTGGAGTGGCTGTTCGAAAGCATTTCTTTCCCGCTTCTCCGCTATAATGT
CCTCCCAAGTCACTCTCCAATGATTCGTTCAAGTATAGTCCACAGGCTAG
GATACAAGTTTCAACAAGCTTTACGCCCACTTGTTCGTTTCCCTCCTCCT
GTAGGCTCGAGTGATGCCGCGTCCAAGTGACCTCCCGGGGTTCTTTTCAC
CTTTCCCTCACGGTACTATTACACTATCGGTCATTCAGTAGTATTTAGCT
TTACGAGGTGGTCCTCGCAGATTCACAAGGGATTTCACGTGCCCCATGCT
ACTCGGGATGGTATCTAATCAAACTAAAAAATTAAAGGTTTTCAATTACA
AGATTTTCACTTTCTAGGATTTAGTATTCGAACTAATTCGTCTAACCAAT
GTACTTTATTTCAATACCCCCCACAACACCTTTCTTTAGAAAAAATTCAA
ATGAAAGGTGTAAGCTTCTTCCCGGTCCGCTCGCCGCTACTAAGGGAATC
GTTTACCTGCAACATCGGCCTGCACCTTCAAACTTGAGAGAAATAAACGG
CGCGAGGTACAGTAGTTGCTCGTGGTGGAATTGGTTGCTGTAGTACCCAC
GTATAGGCAACAGGGGACTCCCGTACGGTTGTTGGACTCTGTTTACCAGG
TAGGGAACAGAGCACGCTTACGTTTTTCACACTTGTTGAGGCGAGACGAA
TCGACGAGTGATCTCCGCATATCGTTTTTTGCGCGTTAGATTTTGCCGCG
ACATGTCAGTGCTGGCCCTACTTTCTCGGGTTTCTTCCTACCTCCTTTCA
GGGCGCCAAATGCCCTCTCCGTAAACGCTCTTCTACCCCCTCCTCCAGCT
GGTTTGCCTCCCACAGCCATTGGTCGGTCACATCTTCTGTACGATCTGAA
GGATTCAGGCTGGTGTGAAACACGGTTTGGTATCGCATGTCTGCCTCACT
CTGGGAAGAGGCATTCCTGGAGCGGGGTGCCTTCGTTCCGATTGGATGGT
TGGGGTCGGTTCGTGCCTGTGGATCGAATACATTGCACAGCGTCATAGAA
GTACGGCTGACTTTCCTTATGCCATGCAATGTGTTCAATCCACAGGCATC
AACCGACAGGAGGCTATCCAACCGGAACGAAGAGACTCCGGTCCTGCCCT
GCCTCTTCCCAGGATGAGGCACACGTGTGATACCAAACCGTCTTTGACAC
CAACCTGATCCCTTCGCGTCTCAAGATCGGACAGAAGGGTGTGCTGTCTC
CGGGTGCCAACAGTCGTGAAGAGGTGTAGATGGGGCTCGCCGCCGCTGCA
GAGAAACAAGATGACACACCACGCACCAGCTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig83:129923..135355+

>mRNA_P-littoralis_Contig83.41.1 ID=mRNA_P-littoralis_Contig83.41.1|Name=mRNA_P-littoralis_Contig83.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig83:129923..135355+ (Pylaiella littoralis U1_48)
ATGTGCAGATATCATAGCCTCTATGACCACATCTGCAGCGATCCCTCCCT
GTGGGATGAATCAGCAGTACGGGCATTAGAAGGTACTGAGATCAAGGATC
GGAAGTTTTTTTTTATTTCGAGACAACGAGACAACCCGACCCTCGAAGAA
AGGATACGACCATATTATACCTGCCCGATCATCCTGTTGTACTTGCCACC
TGCACACCAGCAGATCAGCAGATGCAGTTTCGCGCAGCTCTACGAAAAGG
GGGTGCTGCACAGGGCATGCACATCCTATCGCGAGCGCTATTCTGGACTG
ACGGGGATTCTCACAGAAGAAGAGGAGGAGGGAGAAGCAGGGAGACGGCA
TCAACCGACAGGAGGCTATCCAACCGGAACGAAGAGACTCCGGTCCTGCC
CTGCCTCTTCCCAGGATGAGGCACACGTGTGA
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