mRNA_P-littoralis_Contig83.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig83.15.1
Unique NamemRNA_P-littoralis_Contig83.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig83.15.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 6.860e-12
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 2 
Query:   83 IFQHAVVWNPIADTLQHFSGSAPAQTIARDTGTLALSSVARRIAWGEVSPSTGLEW 250
            +F +AVVW+P+ +TL+HFSG+A +  I +DTGTL  SSVA  IA GEVSP+TG  W
Sbjct:  340 MFHNAVVWDPLKNTLRHFSGAASSLAITKDTGTLEFSSVASGIASGEVSPTTGQVW 395
[Close]
BLAST of mRNA_P-littoralis_Contig83.15.1 vs. uniprot
Match: D7G3Y3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y3_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 7.140e-12
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 2 
Query:   83 IFQHAVVWNPIADTLQHFSGSAPAQTIARDTGTLALSSVARRIAWGEVSPSTGLEW 250
            +F +AVVW+P+ +TL+HFSG+A +  I  DTGTL  SSVA  IA GEVSP+TG  W
Sbjct:    1 MFHNAVVWDPLKNTLRHFSGAASSLAITNDTGTLEFSSVASGIASGEVSPTTGQVW 56
[Close]
BLAST of mRNA_P-littoralis_Contig83.15.1 vs. uniprot
Match: D7FQM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM4_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.070e-10
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 2 
Query:   83 IFQHAVVWNPIADTLQHFSGSAPAQTIARDTGTLALSSVARRIAWGEVSPSTGLEW 250
            +F +AVVW+P+ +TL+HFS +A +  I +DTGTL  SSVA  IA GEVSP+TG  W
Sbjct:  117 MFHNAVVWDPLKNTLRHFSCAASSLAITKDTGTLEFSSVASGIASGEVSPTTGQVW 172
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig83.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KFX7_9PHAE6.860e-1258.93Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7G3Y3_ECTSI7.140e-1258.93Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7FQM4_ECTSI1.070e-1057.14Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig83contigP-littoralis_Contig83:40626..41467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size259
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791687.107453-CDS-P-littoralis_Contig83:40625..408011680791687.107453-CDS-P-littoralis_Contig83:40625..40801Pylaiella littoralis U1_48CDSP-littoralis_Contig83 40626..40801 +
1680791687.121853-CDS-P-littoralis_Contig83:41386..414651680791687.121853-CDS-P-littoralis_Contig83:41386..41465Pylaiella littoralis U1_48CDSP-littoralis_Contig83 41387..41465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig83.15.1prot_P-littoralis_Contig83.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig83 40626..41465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig83.15.1

>prot_P-littoralis_Contig83.15.1 ID=prot_P-littoralis_Contig83.15.1|Name=mRNA_P-littoralis_Contig83.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
VVRESRLEDSQEARLNVMRKLQTAHNIYISTRRRVEPHCGYSTALLRVGS
GANHRQRHRNTGVVIGSPQNSLGRGFSKYWARVGT
back to top

mRNA from alignment at P-littoralis_Contig83:40626..41467+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig83.15.1 ID=mRNA_P-littoralis_Contig83.15.1|Name=mRNA_P-littoralis_Contig83.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=842bp|location=Sequence derived from alignment at P-littoralis_Contig83:40626..41467+ (Pylaiella littoralis U1_48)
GTTGTCCGAGAGTCGAGATTGGAGGACAGTCAGGAAGCGAGGTTGAATGT
GATGAGGAAGCTACAAACAGCTCACAACATATATATTTCAACACGCCGTC
GTGTGGAACCCCATTGCGGATACTCTACAGCACTTCTCCGGGTCGGCTCC
GGCGCAAACCATCGCCAGAGACACAGGTCAGGTTGACTGCAACAAACCTC
GCTGCTGCCTACATTGTTACCTGCAGCGGTCTACCTCCGTAACGAATAAT
ATCGCACGACATTTACACCCCTTTGTACGCCGTCACGAACATGAACCGTT
GTCATGTCGTAGGGGCGACATCGCTTTGACCGCCATATATATGCCGTATA
GGACAACGAAAAAAATTATCAAAACAACGGCTCTTGCATGGAAGCAATGG
AGCACGTCGCCAAAAACAATGTCGACGACATCACCGGCGCTAAGAACGCG
CTTTGCAAGTCCAGGATTGGCGACGTAAAAATTAGCGTGTAGGTCTCAAG
ATAATCACTGTAGGAGGTGGCGAACGACAAAATGGCCACTCTCATGGCGG
CATTTAGGTGCAGAAGGGTAAGTGGATCACTTGGGCAAGCGTTTCTTTCG
AGCGCCTGTAGCCCCCCCATCGTGTTTTGTTCCCGACAGGTACAAGTAAT
CACATGTTGCCAAGTAAAACGCCACGTATCGAGCACCATCCAAGTTTCAA
GTACGATAACGCAGCCCGATTGCTTCTTTTACACGTCACGTTTCGCAATT
GTTTGGACCAGGAACACTGGCGTTGTCATCGGTAGCCCGCAGAATAGCTT
GGGGCGAGGTTTCTCCAAGTACTGGGCTAGAGTGGGTACCGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig83:40626..41467+

>mRNA_P-littoralis_Contig83.15.1 ID=mRNA_P-littoralis_Contig83.15.1|Name=mRNA_P-littoralis_Contig83.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig83:40626..41467+ (Pylaiella littoralis U1_48)
GTTGTCCGAGAGTCGAGATTGGAGGACAGTCAGGAAGCGAGGTTGAATGT
GATGAGGAAGCTACAAACAGCTCACAACATATATATTTCAACACGCCGTC
GTGTGGAACCCCATTGCGGATACTCTACAGCACTTCTCCGGGTCGGCTCC
GGCGCAAACCATCGCCAGAGACACAGGAACACTGGCGTTGTCATCGGTAG
CCCGCAGAATAGCTTGGGGCGAGGTTTCTCCAAGTACTGGGCTAGAGTGG
GTACC
back to top