mRNA_P-littoralis_Contig829.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig829.10.1
Unique NamemRNA_P-littoralis_Contig829.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig829.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig829contigP-littoralis_Contig829:24315..25266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size493
Hectar predicted targeting categoryother localisation
Exons2
Cds size492
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791686.2231133-CDS-P-littoralis_Contig829:24315..243421680791686.2231133-CDS-P-littoralis_Contig829:24315..24342Pylaiella littoralis U1_48CDSP-littoralis_Contig829 24316..24342 -
1680791686.2359068-CDS-P-littoralis_Contig829:24801..252661680791686.2359068-CDS-P-littoralis_Contig829:24801..25266Pylaiella littoralis U1_48CDSP-littoralis_Contig829 24802..25266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig829.10.1prot_P-littoralis_Contig829.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig829 24316..25266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig829.10.1

>prot_P-littoralis_Contig829.10.1 ID=prot_P-littoralis_Contig829.10.1|Name=mRNA_P-littoralis_Contig829.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=164bp
RRVNKAAKACGSVDEKGSAGLSVNEGYLGRLVCLTPSPPLWDLYHISRGK
ISRAEQDAGETGCKHEVYVKLAQEMVDEEWKDSNGNKVSVPSDPSQDDKT
PEGLRRQLRSLDLKGAARGLKNERRVKWNNNEDAFMDDLQKRCFDWLKEV
RKNHTEFARKTDAS
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mRNA from alignment at P-littoralis_Contig829:24315..25266-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig829.10.1 ID=mRNA_P-littoralis_Contig829.10.1|Name=mRNA_P-littoralis_Contig829.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=952bp|location=Sequence derived from alignment at P-littoralis_Contig829:24315..25266- (Pylaiella littoralis U1_48)
CGACGGGTGAACAAGGCAGCGAAGGCGTGTGGGAGTGTGGACGAAAAGGG
CTCGGCTGGACTCTCGGTTAATGAGGGATACCTCGGTCGGCTAGTGTGCT
TGACGCCGAGCCCCCCGTTGTGGGATCTGTACCATATTTCCAGGGGTAAG
ATTAGCCGAGCTGAGCAAGATGCTGGCGAAACTGGATGTAAGCACGAGGT
TTACGTGAAACTGGCTCAGGAGATGGTGGATGAAGAATGGAAAGACAGCA
ACGGGAACAAGGTCTCCGTGCCGAGCGACCCTAGCCAGGACGACAAAACG
CCGGAAGGACTCCGTCGTCAATTGCGCTCTCTAGATCTGAAGGGGGCTGC
CCGAGGTCTGAAGAACGAACGTCGTGTCAAGTGGAACAACAATGAGGACG
CATTCATGGACGACCTGCAGAAACGCTGTTTCGATTGGCTGAAGGAAGTG
AGGAAAAACCACACGGTGAGCGAAGCCTTTGGAGTAATCGTTGTGCATCT
GTTGGCAACGCGAGGTCATCGAAACACTAGGTGTCTCTAGTCGGCATTCG
CATCGTCGGGTGCGTACAAACCAGGGCACATCAGCTCGTGCGCGTGAGTT
TTTTTCGCTCAGAGGTTTGGCGGTGCCTCACGCGTCTTTTGTTTTTAGTG
GGCAGTGTTGCATTCCTGGAAGTCCTTTTTCGTGTCCTGCTTGTGTCAGA
TTTTACCGCACCCACGAAGTAACCGACGGCATGTCGCAGTGGTCTCCAAC
GCAACCAAACATCTCGTGATTGCACCAACTACGCTCGAATCACATAAACG
GACGGCCAGCTTGGGTTCAGTTTGCTACCGACACGAACGATGACCCCCCC
CCAAACATCCCCTGTCACCCCCGTCCATCCGCCTCTGTGCCATTCGCTTT
ATGTAATGGGCATGGGCGTGGCAGGAATTCGCGCGCAAAACTGATGCGAG
CG
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Coding sequence (CDS) from alignment at P-littoralis_Contig829:24315..25266-

>mRNA_P-littoralis_Contig829.10.1 ID=mRNA_P-littoralis_Contig829.10.1|Name=mRNA_P-littoralis_Contig829.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=492bp|location=Sequence derived from alignment at P-littoralis_Contig829:24315..25266- (Pylaiella littoralis U1_48)
CGACGGGTGAACAAGGCAGCGAAGGCGTGTGGGAGTGTGGACGAAAAGGG
CTCGGCTGGACTCTCGGTTAATGAGGGATACCTCGGTCGGCTAGTGTGCT
TGACGCCGAGCCCCCCGTTGTGGGATCTGTACCATATTTCCAGGGGTAAG
ATTAGCCGAGCTGAGCAAGATGCTGGCGAAACTGGATGTAAGCACGAGGT
TTACGTGAAACTGGCTCAGGAGATGGTGGATGAAGAATGGAAAGACAGCA
ACGGGAACAAGGTCTCCGTGCCGAGCGACCCTAGCCAGGACGACAAAACG
CCGGAAGGACTCCGTCGTCAATTGCGCTCTCTAGATCTGAAGGGGGCTGC
CCGAGGTCTGAAGAACGAACGTCGTGTCAAGTGGAACAACAATGAGGACG
CATTCATGGACGACCTGCAGAAACGCTGTTTCGATTGGCTGAAGGAAGTG
AGGAAAAACCACACGGAATTCGCGCGCAAAACTGATGCGAGC
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