mRNA_P-littoralis_Contig828.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig828.16.1
Unique NamemRNA_P-littoralis_Contig828.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig828.16.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 3.380e-25
Identity = 76/208 (36.54%), Postives = 109/208 (52.40%), Query Frame = 1 
Query:    1 MVGHCSHSVCNNDEFKKVQEELEEMCKLLELIRRNDTRRASLHAMLQRVLRLYRALVEYF-NRCGSDRALFPTEWQAVQQVVSVLDDAAATAAQVQGGRHGFVGQSINDFFVLHHSVSAPDQDIRCLD-PWDGP---KTSVTTSQLQPLTRTLLTVMAEDMSERELGSATLSPETINLVLDPRFKSCCSSVCLNGGAALQARVAVDVE 609
            +VG  SHS  NNDE K +Q   EE   + ELIRRNDTR AS HAM+ R+L+L +A+VEYF +   ++R L   EW    +V S+LD  A    ++QG     + Q++ +   +    S     IR  D P++     K  +    L   T  +  V+   M ++ELG+A +  E I  +LDPR K C     +NG A L+A    DV+
Sbjct:   84 VVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVK 291
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BLAST of mRNA_P-littoralis_Contig828.16.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 6.330e-25
Identity = 76/208 (36.54%), Postives = 109/208 (52.40%), Query Frame = 1 
Query:    1 MVGHCSHSVCNNDEFKKVQEELEEMCKLLELIRRNDTRRASLHAMLQRVLRLYRALVEYF-NRCGSDRALFPTEWQAVQQVVSVLDDAAATAAQVQGGRHGFVGQSINDFFVLHHSVSAPDQDIRCLD-PWDGP---KTSVTTSQLQPLTRTLLTVMAEDMSERELGSATLSPETINLVLDPRFKSCCSSVCLNGGAALQARVAVDVE 609
            +VG  SHS  NNDE K +Q   EE   + ELIRRNDTR AS HAM+ R+L+L +A+VEYF +   ++R L   EW    +V S+LD  A    ++QG     + Q++ +   +    S     IR  D P++     K  +    L   T  +  V+   M ++ELG+A +  E I  +LDPR K C     +NG A L+A    DV+
Sbjct:  412 VVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVK 619
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BLAST of mRNA_P-littoralis_Contig828.16.1 vs. uniprot
Match: D7G031_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G031_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 4.250e-8
Identity = 44/131 (33.59%), Postives = 60/131 (45.80%), Query Frame = 1 
Query:  259 AAATAAQVQGGRHGFVGQSINDFFVLHHSVSAPDQDIR--------------------CLDPWDGPKTSVTTSQLQPLTRTLLTVMAEDMSERELGSATLSPETINLVLDPRFKSCCSSVCLNGGAALQAR 591
            A A A   +  R  F+ +SI     LH S   P QDIR                           P  S   ++L P  + LL  +AE M E  LG A    E ++++LDPRFK CC+S C++GG+AL+ R
Sbjct:  550 AGAAARDKKKPRGIFLAESIELHANLHCSFIYPLQDIRGDALATAATGEGVAAAPAMVAAGAGAAPFCSKRVAELTPEAQALLEAVAEGMEESGLGRAREDTEAVSMLLDPRFKQCCASTCVDGGSALKLR 680
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig828.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE3.380e-2536.54Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE6.330e-2536.54Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D7G031_ECTSI4.250e-833.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig828contigP-littoralis_Contig828:54598..55621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size663
Hectar predicted targeting categoryother localisation
Exons2
Cds size663
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791685.623414-CDS-P-littoralis_Contig828:54597..551471680791685.623414-CDS-P-littoralis_Contig828:54597..55147Pylaiella littoralis U1_48CDSP-littoralis_Contig828 54598..55147 -
1680791685.6398923-CDS-P-littoralis_Contig828:55508..556211680791685.6398923-CDS-P-littoralis_Contig828:55508..55621Pylaiella littoralis U1_48CDSP-littoralis_Contig828 55509..55621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig828.16.1prot_P-littoralis_Contig828.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig828 54598..55621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig828.16.1

>prot_P-littoralis_Contig828.16.1 ID=prot_P-littoralis_Contig828.16.1|Name=mRNA_P-littoralis_Contig828.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=221bp
MVGHCSHSVCNNDEFKKVQEELEEMCKLLELIRRNDTRRASLHAMLQRVL
RLYRALVEYFNRCGSDRALFPTEWQAVQQVVSVLDDAAATAAQVQGGRHG
FVGQSINDFFVLHHSVSAPDQDIRCLDPWDGPKTSVTTSQLQPLTRTLLT
VMAEDMSERELGSATLSPETINLVLDPRFKSCCSSVCLNGGAALQARVAV
DVEGAFDYFLGYTKAQSEEQG
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mRNA from alignment at P-littoralis_Contig828:54598..55621-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig828.16.1 ID=mRNA_P-littoralis_Contig828.16.1|Name=mRNA_P-littoralis_Contig828.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1024bp|location=Sequence derived from alignment at P-littoralis_Contig828:54598..55621- (Pylaiella littoralis U1_48)
ATGGTTGGGCACTGCAGCCACAGTGTGTGCAACAACGACGAGTTCAAGAA
AGTGCAAGAAGAGCTTGAAGAGATGTGCAAGCTCTTGGAGCTCATCCGTC
GGAACGACACAAGGTGAGAGGTGTGCGCGAATGATGTGCGCAGGTTGTAT
TCGGGATTTATTTTGTGTGTTCGTGTCGTCTCGGACAACAGAAAGGTCGA
GGCAGGCGCCGCCGCCCGCCAAGTATGCAGCGACTTGCTTTCGCTTATGG
ATTATTACAAAATCGCCGTGAGTTGCCACGCCCTAAAGAAAAAATCAAAA
AAATTGTAAAATGTCGTTCCTGTGGTGAACGAAGTTGGGAGCAAACGTTC
CGGGTCACTCGTTTAGACACGCAAACTGACGTGCCCCTTCCGCCCCCCTC
CCCCGAAGCAAGCACTAACTCGTTTGCAAACGAAATTGCCTCCCATCACC
CGCCACGTTTTTAACGGTTCATAGGCGGGCTTCGCTGCATGCAATGCTCC
AGCGCGTGCTCAGGCTCTACAGAGCTCTCGTCGAGTACTTCAACCGGTGT
GGGAGCGACCGTGCTTTGTTCCCGACGGAGTGGCAAGCAGTGCAGCAGGT
GGTGAGCGTCCTCGACGACGCCGCTGCCACGGCGGCCCAGGTCCAGGGGG
GTCGTCATGGGTTTGTCGGCCAGTCCATCAACGACTTCTTCGTCCTGCAC
CACTCGGTCAGCGCCCCAGACCAGGACATTCGATGCCTGGATCCCTGGGA
CGGCCCCAAAACATCAGTCACCACGAGCCAGCTTCAACCGCTCACGCGGA
CACTACTGACGGTAATGGCGGAGGACATGTCCGAGAGGGAGCTGGGGTCT
GCGACGCTGTCGCCCGAGACGATCAACCTGGTGCTCGATCCCCGCTTCAA
GTCCTGCTGCTCGAGCGTGTGCTTGAACGGGGGCGCAGCACTTCAAGCGC
GAGTGGCCGTCGACGTCGAGGGGGCCTTCGACTACTTCCTTGGGTACACG
AAGGCGCAGAGTGAGGAACAGGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig828:54598..55621-

>mRNA_P-littoralis_Contig828.16.1 ID=mRNA_P-littoralis_Contig828.16.1|Name=mRNA_P-littoralis_Contig828.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=663bp|location=Sequence derived from alignment at P-littoralis_Contig828:54598..55621- (Pylaiella littoralis U1_48)
ATGGTTGGGCACTGCAGCCACAGTGTGTGCAACAACGACGAGTTCAAGAA
AGTGCAAGAAGAGCTTGAAGAGATGTGCAAGCTCTTGGAGCTCATCCGTC
GGAACGACACAAGGCGGGCTTCGCTGCATGCAATGCTCCAGCGCGTGCTC
AGGCTCTACAGAGCTCTCGTCGAGTACTTCAACCGGTGTGGGAGCGACCG
TGCTTTGTTCCCGACGGAGTGGCAAGCAGTGCAGCAGGTGGTGAGCGTCC
TCGACGACGCCGCTGCCACGGCGGCCCAGGTCCAGGGGGGTCGTCATGGG
TTTGTCGGCCAGTCCATCAACGACTTCTTCGTCCTGCACCACTCGGTCAG
CGCCCCAGACCAGGACATTCGATGCCTGGATCCCTGGGACGGCCCCAAAA
CATCAGTCACCACGAGCCAGCTTCAACCGCTCACGCGGACACTACTGACG
GTAATGGCGGAGGACATGTCCGAGAGGGAGCTGGGGTCTGCGACGCTGTC
GCCCGAGACGATCAACCTGGTGCTCGATCCCCGCTTCAAGTCCTGCTGCT
CGAGCGTGTGCTTGAACGGGGGCGCAGCACTTCAAGCGCGAGTGGCCGTC
GACGTCGAGGGGGCCTTCGACTACTTCCTTGGGTACACGAAGGCGCAGAG
TGAGGAACAGGGT
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