mRNA_P-littoralis_Contig828.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig828.12.1
Unique NamemRNA_P-littoralis_Contig828.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig828.12.1 vs. uniprot
Match: A0A6H5JVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH8_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 3.720e-5
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:    1 MRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAAAVAVENNWAELTRP-YLKSQANKGVGRKSAIRKLAKKRSQWENAATA 243
            +R    +   +L  G  Q A   +RD+  A  ++ AV   +   E+ RP +LK Q+N+GVGRK A+RKLAK RSQ E AA A
Sbjct:  158 LRQAAQQLNYYLERGQLQCAQMVSRDLPGA--MSYAVKEAHQQEEVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAVA 237
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig828.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JVH8_9PHAE3.720e-542.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig828contigP-littoralis_Contig828:51481..51726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size247
Hectar predicted targeting categoryother localisation
Exons1
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791685.5056167-CDS-P-littoralis_Contig828:51480..517261680791685.5056167-CDS-P-littoralis_Contig828:51480..51726Pylaiella littoralis U1_48CDSP-littoralis_Contig828 51481..51726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig828.12.1prot_P-littoralis_Contig828.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig828 51481..51726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig828.12.1

>prot_P-littoralis_Contig828.12.1 ID=prot_P-littoralis_Contig828.12.1|Name=mRNA_P-littoralis_Contig828.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
MRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAAAVAVENNWAELTRPY
LKSQANKGVGRKSAIRKLAKKRSQWENAATAA
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mRNA from alignment at P-littoralis_Contig828:51481..51726-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig828.12.1 ID=mRNA_P-littoralis_Contig828.12.1|Name=mRNA_P-littoralis_Contig828.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig828:51481..51726- (Pylaiella littoralis U1_48)
ATGCGGACGCTCCTGCACAAGTGTGAAGCGTTCCTTCGAGACGGCATGGC
TCAATCTGCGCACGAAGCGACGCGGGATATTTCTGCTGCCAAGATGCTTG
CTGCGGCGGTTGCGGTGGAAAACAATTGGGCGGAGTTGACTAGACCGTAC
CTCAAAAGTCAAGCCAACAAGGGCGTGGGCAGGAAGAGCGCTATTAGGAA
GCTGGCGAAGAAGAGGTCACAGTGGGAGAACGCGGCAACAGCAGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig828:51481..51726-

>mRNA_P-littoralis_Contig828.12.1 ID=mRNA_P-littoralis_Contig828.12.1|Name=mRNA_P-littoralis_Contig828.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig828:51481..51726- (Pylaiella littoralis U1_48)
ATGCGGACGCTCCTGCACAAGTGTGAAGCGTTCCTTCGAGACGGCATGGC
TCAATCTGCGCACGAAGCGACGCGGGATATTTCTGCTGCCAAGATGCTTG
CTGCGGCGGTTGCGGTGGAAAACAATTGGGCGGAGTTGACTAGACCGTAC
CTCAAAAGTCAAGCCAACAAGGGCGTGGGCAGGAAGAGCGCTATTAGGAA
GCTGGCGAAGAAGAGGTCACAGTGGGAGAACGCGGCAACAGCAGCC
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