mRNA_P-littoralis_Contig828.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig828.25.1
Unique NamemRNA_P-littoralis_Contig828.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig828.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig828contigP-littoralis_Contig828:61384..62577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size191
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791685.0278878-CDS-P-littoralis_Contig828:61383..614471680791685.0278878-CDS-P-littoralis_Contig828:61383..61447Pylaiella littoralis U1_48CDSP-littoralis_Contig828 61384..61447 -
1680791685.0382626-CDS-P-littoralis_Contig828:62452..625771680791685.0382626-CDS-P-littoralis_Contig828:62452..62577Pylaiella littoralis U1_48CDSP-littoralis_Contig828 62453..62577 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig828.25.1prot_P-littoralis_Contig828.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig828 61384..62577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig828.25.1

>prot_P-littoralis_Contig828.25.1 ID=prot_P-littoralis_Contig828.25.1|Name=mRNA_P-littoralis_Contig828.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=63bp
ADPLPTPLLEVTPTSSFLYSSTSTMKSRPSSTSAQCLELPEVTSLKVPIW
RSLLSGMLALVPR
back to top

mRNA from alignment at P-littoralis_Contig828:61384..62577-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig828.25.1 ID=mRNA_P-littoralis_Contig828.25.1|Name=mRNA_P-littoralis_Contig828.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1194bp|location=Sequence derived from alignment at P-littoralis_Contig828:61384..62577- (Pylaiella littoralis U1_48)
GCTGATCCACTGCCAACGCCACTGCTTGAGGTAACGCCTACATCCTCCTT
CCTCTATTCCTCGACATCGACCATGAAATCGCGCCCGTCAAGCACGTCCG
CACAATGCCTTGAACTTCCTGAGGTCTGCGCAACAGGGAATTGCGGAAGG
GGTGGAACGAGCGGTGGGAGTCATGAGTTATCATGTTGGTGACGCTCCCA
TCTGCATGAAGCTGCGGTCACGGAGACATGGGATAACACCTAAGAATTCA
TTACAACTTCTTGGCACACAAACACTTAACTGCTTCACTGCTGCACCTGC
CGCTGCACCGTACAGTTGCGCGGCTCCTGTGATATACTGCTGCACTGTGC
TGTCTACTCTGTCGCCCCTGTTTGTGTGTGAGTGATATGCGACATGACCT
CGGCTTATGGGAGGTGTGGCGCAATCGCCTTTTCTTCCGACTGCTGTTGT
TTTGTGTTTTGTTGCTGCTGCTGTGCCTCCTCTCAACAACATAAATGTAT
GCTTCGCAGAAGCATCAATCTGTGTGTGCGATACGCAGGCACCCACACAC
ACCCAATATACAGAGCTGTACCACTGCGGCATGTGCCGTGCTGTCTGCTG
TTGTGTGTGTTGCTGTTTTTCGGTGGTCAACCAGAAGAAAAATAACTCCA
CCAGCGCTCCAAACGACGTTATTTTCTAGACTTAACACCAGACTCTTCGT
CTCTGGGTCTCCTTTTTTTATTCGTGGTCTGTGGTGTTCAACACCGCCAA
GCGTTACAAGCGGAAAAGCAATAATTGCAACCGTCGAGGAAGATCAAGAA
TTTGACGCAATTATTTAAAGTCATTTTTCTGGTGGAAACCTCGCACTATC
TTTGTCGCACACACCTGTGTACAAATTGACGTTCAGTATACACGTGAAGG
CAACGGCGTAACGAAGTACACCACGCTATACGCCGAACGGGTTGATCACA
GATATCAAGCTTGCCCCTGAATGCGCTCCATCCGTCATTTTCTCCACACA
TGCGTCAAACCCACAACACGAACAACACCACGAACGATCACCTTCGTGTT
TAGTTCGAAGCAATAACCTCCTTTCAAGAGTCACGATGAGGGGGCCGTAA
AAATGTACAATTCGCAGTTCCGATACGCACCACGTCTTTAAAAGTGCCAA
TCTGGCGATCTTTGTTGAGTGGCATGTTGGCTTTGGTCCCACGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig828:61384..62577-

>mRNA_P-littoralis_Contig828.25.1 ID=mRNA_P-littoralis_Contig828.25.1|Name=mRNA_P-littoralis_Contig828.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig828:61384..62577- (Pylaiella littoralis U1_48)
GCTGATCCACTGCCAACGCCACTGCTTGAGGTAACGCCTACATCCTCCTT
CCTCTATTCCTCGACATCGACCATGAAATCGCGCCCGTCAAGCACGTCCG
CACAATGCCTTGAACTTCCTGAGGTCACGTCTTTAAAAGTGCCAATCTGG
CGATCTTTGTTGAGTGGCATGTTGGCTTTGGTCCCACGC
back to top