mRNA_P-littoralis_Contig827.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig827.36.1
Unique NamemRNA_P-littoralis_Contig827.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig827.36.1 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 9.860e-30
Identity = 66/131 (50.38%), Postives = 87/131 (66.41%), Query Frame = 3 
Query:  147 PWRKEGVDGLYFDRDADS-YDNVDGDPVFSTGIAVSSDGFNYWSFGGKVYNVNATYVALSCLSPALLRRLRSWSLVCAGSKGR-WEEEVGGLMETIQHLEKGCRARMKTQDGHSVTCVVQHEGLKLQNQEA 533
            PWR++G  G +FDR A   + N+ G PVFSTG+A SSD FNY+S  GK Y+VNAT+V L CLSPALLRRLRSW L   G  G  WE +V  LM+ I+ L+ GC+A +   D  ++T +V+  GL   N ++
Sbjct:    3 PWRQQGYHGWFFDRRASGVHANLTGLPVFSTGLACSSDAFNYFSLSGKRYSVNATFVGLGCLSPALLRRLRSWHLATLGLPGAAWELDVLPLMKIIRLLQNGCKAEIAVGDKQTITALVRM-GLLTANLDS 132
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BLAST of mRNA_P-littoralis_Contig827.36.1 vs. uniprot
Match: A0A6H5JXS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXS6_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.930e-16
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 3 
Query:  249 SSDGFNYWSFGGKVYNVNATYVALSCLSPALLRRLRSWSLVCAGSKGR-WEEEVGGLMETIQHLEKGCRARMKTQDGHSVT 488
            SSD FNY+S  G+ ++V+AT+V L CLSP LLRRLRSW L   G  G  WE ++  LME I+ L+ GC+  +   D  +VT
Sbjct:   60 SSDAFNYFSLSGRKHSVSATFVGLGCLSPTLLRRLRSWYLATLGLPGAAWELDILPLMEIIRWLQNGCKTEISIGDKQTVT 140
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig827.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZI4_ECTSI9.860e-3050.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXS6_9PHAE1.930e-1649.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig827contigP-littoralis_Contig827:116050..117172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size572
Hectar predicted targeting categoryother localisation
Exons2
Cds size522
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791684.9685857-CDS-P-littoralis_Contig827:116049..1161331680791684.9685857-CDS-P-littoralis_Contig827:116049..116133Pylaiella littoralis U1_48CDSP-littoralis_Contig827 116050..116133 -
1680791684.9876697-CDS-P-littoralis_Contig827:116684..1171221680791684.9876697-CDS-P-littoralis_Contig827:116684..117122Pylaiella littoralis U1_48CDSP-littoralis_Contig827 116685..117122 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791684.9976459-UTR-P-littoralis_Contig827:117122..1171721680791684.9976459-UTR-P-littoralis_Contig827:117122..117172Pylaiella littoralis U1_48UTRP-littoralis_Contig827 117123..117172 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig827.36.1prot_P-littoralis_Contig827.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig827 116050..117122 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig827.36.1

>prot_P-littoralis_Contig827.36.1 ID=prot_P-littoralis_Contig827.36.1|Name=mRNA_P-littoralis_Contig827.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=174bp
MTSQELNEQVPTFLGEGFVTFLTNPRRVKEQRPWRKEGVDGLYFDRDADS
YDNVDGDPVFSTGIAVSSDGFNYWSFGGKVYNVNATYVALSCLSPALLRR
LRSWSLVCAGSKGRWEEEVGGLMETIQHLEKGCRARMKTQDGHSVTCVVQ
HEGLKLQNQEAVFDVRGHPGGAL*
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mRNA from alignment at P-littoralis_Contig827:116050..117172-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig827.36.1 ID=mRNA_P-littoralis_Contig827.36.1|Name=mRNA_P-littoralis_Contig827.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1123bp|location=Sequence derived from alignment at P-littoralis_Contig827:116050..117172- (Pylaiella littoralis U1_48)
AAGTGGATGCCCTCGATGCCCCCTGCCTCGTCTTACCGGCGGGTACCGAT
ATGACCTCGCAGGAATTGAACGAGCAGGTGCCTACATTCCTCGGTGAAGG
GTTTGTTACTTTTCTCACCAACCCCAGACGGGTGAAGGAACAACGACCGT
GGAGGAAGGAGGGCGTGGATGGCTTGTACTTCGACAGAGACGCCGATAGC
TACGACAACGTTGATGGCGACCCTGTATTTTCGACGGGGATTGCTGTCTC
CAGCGACGGCTTCAACTATTGGTCGTTCGGGGGGAAAGTCTACAACGTCA
ACGCCACGTACGTGGCTCTGAGCTGTTTGTCACCCGCTCTCCTACGACGC
CTACGTTCATGGTCGTTGGTGTGTGCGGGTTCGAAGGGGCGTTGGGAGGA
GGAGGTCGGCGGACTAATGGAAACCATTCAGCACCTCGAGAAAGGCTGTC
GCGCAAGAATGAAGACTCAAGACGGGCACAGTGTCACTGTGAGTGTCTGT
TTGCATTTTCTTTTCTTTACACTTATTTCTACCACAGAGTGATCAGGGAG
TCAGGTCTGAATGCCAGCGCTTGCCATTCCGCGCAATGTTTCGGTTTCGT
GCAGGCGAGCGCAGTTTTGTGATATTAAGTTATTGCCCCGCGTGCCGCAA
ACGTAATTTCATTATTTACCTGGTTTTGTTCCCCGGCCTGATGCCCCATG
CCTCTCCACTGTCTGCAACTTTATCTTTTTTGTTGGTGATGTTTCTTTGT
TAAATTTAGTGTTTTCGTCCCTACCATCTATTTCGACAGCGTCTCGTCAT
ATTCAGTGCGATCGGGTGTTTTCCTGGTACGTCACTGCTGTGTTGATAGC
CAGTGACCGCTACATACCTCAGAGGTAACGGTGTTGAATAACCCTAGAGA
ATATCGACAACCGCTGCGTTATTGCTTTGAGAGTATGCATGTCATGCGGA
CTCACTTCTTGTTGTTTTCATTCCCCTCTCATTTAGGTGTTTGTGCGCAT
GGGCTTATTGACGGCAATGCTCGACACCCCTTATCACAGTGCGTGGTCCA
ACACGAAGGGCTCAAACTCCAAAACCAAGAAGCCGTGTTCGACGTGCGAG
GTCACCCAGGAGGAGCTCTCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig827:116050..117172-

>mRNA_P-littoralis_Contig827.36.1 ID=mRNA_P-littoralis_Contig827.36.1|Name=mRNA_P-littoralis_Contig827.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=522bp|location=Sequence derived from alignment at P-littoralis_Contig827:116050..117172- (Pylaiella littoralis U1_48)
ATGACCTCGCAGGAATTGAACGAGCAGGTGCCTACATTCCTCGGTGAAGG
GTTTGTTACTTTTCTCACCAACCCCAGACGGGTGAAGGAACAACGACCGT
GGAGGAAGGAGGGCGTGGATGGCTTGTACTTCGACAGAGACGCCGATAGC
TACGACAACGTTGATGGCGACCCTGTATTTTCGACGGGGATTGCTGTCTC
CAGCGACGGCTTCAACTATTGGTCGTTCGGGGGGAAAGTCTACAACGTCA
ACGCCACGTACGTGGCTCTGAGCTGTTTGTCACCCGCTCTCCTACGACGC
CTACGTTCATGGTCGTTGGTGTGTGCGGGTTCGAAGGGGCGTTGGGAGGA
GGAGGTCGGCGGACTAATGGAAACCATTCAGCACCTCGAGAAAGGCTGTC
GCGCAAGAATGAAGACTCAAGACGGGCACAGTGTCACTTGCGTGGTCCAA
CACGAAGGGCTCAAACTCCAAAACCAAGAAGCCGTGTTCGACGTGCGAGG
TCACCCAGGAGGAGCTCTCTGA
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