mRNA_P-littoralis_Contig827.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig827.24.1
Unique NamemRNA_P-littoralis_Contig827.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig827.24.1 vs. uniprot
Match: A0A6H5JR49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR49_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.020e-47
Identity = 83/163 (50.92%), Postives = 114/163 (69.94%), Query Frame = 1
Query:    1 SADNIANTIARALTGLNIGTRNHVGGAPHPRTLRVTQSSRVAPWTGEIKN-GEDLQTKLIVFQSSMIASFTQEGVREVVLSDTHIRVGVEGVNLDELRAIHSSETVEQAVRAWNMLISTIVYMPVLTQILADGSPSKGWEIFCRYYKPQAAAEKSKLSQEYHT 486
            SAD++ N+IA A+ G    +   +G  PH   LR+T+S RVAPW G  K  G DLQ KL++F+SSM+A F QEGV EVV+SD  I VG  G N+ +LR    +  V +A+ AWN+LIS+I YMP+L+++++DGSPS  W IF +YY+PQA AEK +L +EYH+
Sbjct:   96 SADDLTNSIANAIAGRLQTSSGDIGAVPHSGALRMTESRRVAPWDGVFKQEGNDLQQKLLIFKSSMVARFAQEGVHEVVMSDEDIPVGKHGANMAQLRTQFDALRVAKAIAAWNLLISSISYMPILSEVVSDGSPSGRWMIFLKYYEPQARAEKKRLLKEYHS 258          
BLAST of mRNA_P-littoralis_Contig827.24.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 9.150e-46
Identity = 79/162 (48.77%), Postives = 117/162 (72.22%), Query Frame = 1
Query:    1 SADNIANTIARALTGLNIGTRNHVGGAPHPRTLRVTQSSRVAPWTGEIKNGEDLQTKLIVFQSSMIASFTQEGVREVVLSDTHIRVGVEGVNLDELRAIHSSETVEQAVRAWNMLISTIVYMPVLTQILADGSPSKGWEIFCRYYKPQAAAEKSKLSQEYHT 486
            SAD +AN IA A+ G    +   +G  PHP TLR+T+S R+ PW G  K+G++ Q KL++F+SSM+A F QE V EVV+S+  I VG +G+++  L+  +  + V +AV AWN+LI++I +MP+L++I++DGSPS GW IF +YY+PQA AEK +L +EYH+
Sbjct:   87 SADELANAIATAMAGRLQTSSGDIGAVPHPATLRMTESRRIEPWDGVFKSGDNKQQKLLIFRSSMVARFAQEDVHEVVMSNQDIPVGRQGISMVNLKTEYGDQKVAKAVVAWNLLITSISFMPILSEIVSDGSPSGGWRIFLKYYEPQAKAEKKRLLKEYHS 248          
BLAST of mRNA_P-littoralis_Contig827.24.1 vs. uniprot
Match: A0A6H5KAF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF3_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.380e-41
Identity = 67/127 (52.76%), Postives = 98/127 (77.17%), Query Frame = 1
Query:  103 VTQSSRVAPWTGEIKNGEDLQTKLIVFQSSMIASFTQEGVREVVLSDTHIRVGVEGVNLDELRAIHSSETVEQAVRAWNMLISTIVYMPVLTQILADGSPSKGWEIFCRYYKPQAAAEKSKLSQEYH 483
            +T+  R+AP  G  K GED Q K ++F+S+M+A F QEG R+V L++  I VG EGV+++EL  +HSS++VE+ + +WN+LI+++ YMP+LTQI+ADGSPS GW+IF  YY+P+A AEK +LS +YH
Sbjct:    1 MTEVKRLAPLDGIFKQGEDEQAKFLIFRSNMVAMFAQEGGRDVELTEEKIPVGKEGVSMEELPRVHSSDSVEKTITSWNLLITSVTYMPILTQIIADGSPSGGWKIFLNYYEPRARAEKERLSSQYH 127          
BLAST of mRNA_P-littoralis_Contig827.24.1 vs. uniprot
Match: A0A6H5JCK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK7_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 6.510e-32
Identity = 63/140 (45.00%), Postives = 95/140 (67.86%), Query Frame = 1
Query:    1 SADNIANTIARALTGLNIGTRNHVGGAPHPRTLRVTQSSRVAPWTGEIKNGEDLQTKLIVFQSSMIASFTQEGVREVVLSDTHIRVGVEGVNLDELRAIHSSETVEQAVRAWNMLISTIVYMPVLTQILADGSPSKGWEI 420
            SAD +AN IA A+ G    +   +G  PH  T R+T+  R+ PW G  K G++ Q KL++F+SSM A F QE V EVV+SD  I VG +G+++ +L+  +  + V +AV A N+LI++I YMP+L++I++DGSPS+GW +
Sbjct:   89 SADELANAIATAMAGRLQTSSGDIGPVPHSATRRMTEIRRIEPWDGVFKQGDNRQQKLLIFRSSMAARFAQEDVHEVVMSDQDIPVGRQGISMVDLKTEYGDQKVAKAVVASNLLITSISYMPILSEIVSDGSPSEGWRL 228          
BLAST of mRNA_P-littoralis_Contig827.24.1 vs. uniprot
Match: A0A6H5JQW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW6_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 2.600e-27
Identity = 58/120 (48.33%), Postives = 83/120 (69.17%), Query Frame = 1
Query:    1 SADNIANTIARALTGLNIGTRNHVGGAPHPR-TLRVTQSSRVAPWTGEIKNGEDLQTKLIVFQSSMIASFTQEGVREVVLSDTHIRVGVEGVNLDELRAIHSSETVEQAVRAWNMLISTI 357
            + D+IA T+A ALT     +    G  P    TLR+T+  R+APW G  + GED Q +  +F S+MIA F QEGVREVVLSD  I VG+EG+++++LR +HS ++VE+A+ AWNMLI+++
Sbjct:   71 AVDDIARTLADALTSRLQISPADTGRVPSSAATLRMTEVKRLAPWDGMYRQGEDEQERFSIFPSNMIAMFAQEGVREVVLSDHIIPVGLEGIDMEDLRRMHSPDSVEKAITAWNMLITSV 190          
BLAST of mRNA_P-littoralis_Contig827.24.1 vs. uniprot
Match: A0A6H5K1T0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T0_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.850e-15
Identity = 37/62 (59.68%), Postives = 52/62 (83.87%), Query Frame = 1
Query:  226 EVVLSDTHIRVGVEGVNLDELRAIHSSETVEQAVRAWNMLISTIVYMPVLTQILADGSPSKG 411
            EVVLSD  I VG+EG++ ++LR +HS ++VE+A+ AWN+LI++  YMP+LTQI+ADGSPS G
Sbjct:  117 EVVLSDHRIPVGLEGIDTEDLRRMHSPDSVEKAITAWNLLITSATYMPILTQIIADGSPSGG 178          
BLAST of mRNA_P-littoralis_Contig827.24.1 vs. uniprot
Match: A0A6H5LGW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGW1_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.730e-8
Identity = 22/38 (57.89%), Postives = 35/38 (92.11%), Query Frame = 1
Query:  277 LDELRAIHSSETVEQAVRAWNMLISTIVYMPVLTQILA 390
            ++ELR +HSS++VE+A+ AWN+LI+++ YMP+LTQI+A
Sbjct:    1 MEELRRVHSSDSVEKAIMAWNLLITSVTYMPILTQIIA 38          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig827.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JR49_9PHAE1.020e-4750.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3I1_9PHAE9.150e-4648.77Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5KAF3_9PHAE1.380e-4152.76Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JCK7_9PHAE6.510e-3245.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JQW6_9PHAE2.600e-2748.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1T0_9PHAE1.850e-1559.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LGW1_9PHAE5.730e-857.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig827contigP-littoralis_Contig827:90983..91470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size489
Hectar predicted targeting categoryother localisation
Exons1
Cds size486
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791684.8256712-CDS-P-littoralis_Contig827:90982..914681680791684.8256712-CDS-P-littoralis_Contig827:90982..91468Pylaiella littoralis U1_48CDSP-littoralis_Contig827 90983..91468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig827.24.1prot_P-littoralis_Contig827.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig827 90983..91468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig827.24.1

>prot_P-littoralis_Contig827.24.1 ID=prot_P-littoralis_Contig827.24.1|Name=mRNA_P-littoralis_Contig827.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=162bp
SADNIANTIARALTGLNIGTRNHVGGAPHPRTLRVTQSSRVAPWTGEIKN
GEDLQTKLIVFQSSMIASFTQEGVREVVLSDTHIRVGVEGVNLDELRAIH
SSETVEQAVRAWNMLISTIVYMPVLTQILADGSPSKGWEIFCRYYKPQAA
AEKSKLSQEYHT
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mRNA from alignment at P-littoralis_Contig827:90983..91470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig827.24.1 ID=mRNA_P-littoralis_Contig827.24.1|Name=mRNA_P-littoralis_Contig827.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=488bp|location=Sequence derived from alignment at P-littoralis_Contig827:90983..91470+ (Pylaiella littoralis U1_48)
TCGGCCGACAACATCGCCAACACCATCGCAAGGGCCCTGACAGGCCTGAA CATCGGTACTcGGAATCATGTAGGCGGTGCGCCTCACCCTAGGACACTCA GAGTTACACAGTCGAGTAGAGTTGCGCCTTGGACAGGCGAAATCAAAAAC GGAGAGGATCTACAGACAAAACTTATCGTATTTCAGTCGAGCATGATAGC CAGCTTCACCCAAGAGGGTGTACGGGAAGTGGTGTTGAGTGATACTCACA TCAGGGTTGGAGTAGAGGGCGTAAATTTGGACGAATTGCGTGCAATACAT TCAAGCGAGACAGTAGAGCAGGCAGTCAGAGCGTGGAACATGCTGATCTC AACCATAGTCTACATGCCCGTACTCACACAGATCCTTGCAGACGGTAGCC CCAGTAAGGGCTGGGAAATTTTCTGTAGGTACTACAAGCCTCAGGCAGCA GCAGAGAAATCCAAACTTTCCCAAGAGTACCACACTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig827:90983..91470+

>mRNA_P-littoralis_Contig827.24.1 ID=mRNA_P-littoralis_Contig827.24.1|Name=mRNA_P-littoralis_Contig827.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig827:90983..91470+ (Pylaiella littoralis U1_48)
TCGGCCGACAACATCGCCAACACCATCGCAAGGGCCCTGACAGGCCTGAA
CATCGGTACTcGGAATCATGTAGGCGGTGCGCCTCACCCTAGGACACTCA
GAGTTACACAGTCGAGTAGAGTTGCGCCTTGGACAGGCGAAATCAAAAAC
GGAGAGGATCTACAGACAAAACTTATCGTATTTCAGTCGAGCATGATAGC
CAGCTTCACCCAAGAGGGTGTACGGGAAGTGGTGTTGAGTGATACTCACA
TCAGGGTTGGAGTAGAGGGCGTAAATTTGGACGAATTGCGTGCAATACAT
TCAAGCGAGACAGTAGAGCAGGCAGTCAGAGCGTGGAACATGCTGATCTC
AACCATAGTCTACATGCCCGTACTCACACAGATCCTTGCAGACGGTAGCC
CCAGTAAGGGCTGGGAAATTTTCTGTAGGTACTACAAGCCTCAGGCAGCA
GCAGAGAAATCCAAACTTTCCCAAGAGTACCACACT
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