mRNA_P-littoralis_Contig826.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig826.31.1
Unique NamemRNA_P-littoralis_Contig826.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig826.31.1 vs. uniprot
Match: A0A6H5KKT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT7_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 9.670e-30
Identity = 57/80 (71.25%), Postives = 63/80 (78.75%), Query Frame = 2 
Query:    2 SIHEFTETTRRWERGADGELHQMRWIPDFNNWVLMLPPANAGALQ--IGEELAYWQRAKGAPGGAFVLDVKRAFLVAKKA 235
            SI EFTETTRR ERG DGEL Q RW+P+FN+WVLMLPPANA  LQ    EELA+WQR K APG A +LDVKRA LVA+ A
Sbjct:   12 SIDEFTETTRRRERGLDGELRQKRWMPEFNHWVLMLPPANADVLQPQFSEELAFWQRVKEAPGRALMLDVKRALLVAQVA 91
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BLAST of mRNA_P-littoralis_Contig826.31.1 vs. uniprot
Match: A0A6H5JM74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM74_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 5.360e-24
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 2 
Query:    2 SIHEFTETTRRWERGADGELHQMRWIPDFNNWVLMLPPANAGALQ 136
            SIHEFTETTRRWERGADGELHQMRW+PDFN+WVLMLPPANAGALQ
Sbjct:  145 SIHEFTETTRRWERGADGELHQMRWMPDFNHWVLMLPPANAGALQ 189
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BLAST of mRNA_P-littoralis_Contig826.31.1 vs. uniprot
Match: A0A6H5JS69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS69_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.880e-22
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = 2 
Query:    2 SIHEFTETTRRWERGADGELHQMRWIPDFNNWVLMLPPANAGALQ 136
            SIHEFTETTRRWERG DGELHQMRW+PDFN+WVLMLPPANAGALQ
Sbjct:  281 SIHEFTETTRRWERGVDGELHQMRWMPDFNHWVLMLPPANAGALQ 325
[Close]
BLAST of mRNA_P-littoralis_Contig826.31.1 vs. uniprot
Match: A0A6H5JIG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG7_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 4.630e-20
Identity = 51/79 (64.56%), Postives = 57/79 (72.15%), Query Frame = 2 
Query:    2 SIHEFTETTRRWERGADGELHQMRWIPDFNNWVLMLPPANAGALQIGEELAYWQRAKGAPGGAFVLDVKRAFLVAKKAG 238
            SIHEFTETT        G L Q RW+P+FN+WVLMLPPANA ALQ+       Q+AKGAP  AFVLDVKRA L+AKKAG
Sbjct:  275 SIHEFTETTV-------GGLRQTRWMPEFNHWVLMLPPANASALQVR------QKAKGAPDRAFVLDVKRAILLAKKAG 340
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig826.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KKT7_9PHAE9.670e-3071.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM74_9PHAE5.360e-2495.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS69_9PHAE2.880e-2293.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIG7_9PHAE4.630e-2064.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig826contigP-littoralis_Contig826:26196..26770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size423
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791683.482726-UTR-P-littoralis_Contig826:26195..262621680791683.482726-UTR-P-littoralis_Contig826:26195..26262Pylaiella littoralis U1_48UTRP-littoralis_Contig826 26196..26262 +
1680791683.520232-UTR-P-littoralis_Contig826:26684..267701680791683.520232-UTR-P-littoralis_Contig826:26684..26770Pylaiella littoralis U1_48UTRP-littoralis_Contig826 26685..26770 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791683.4933698-CDS-P-littoralis_Contig826:26262..263311680791683.4933698-CDS-P-littoralis_Contig826:26262..26331Pylaiella littoralis U1_48CDSP-littoralis_Contig826 26263..26331 +
1680791683.506655-CDS-P-littoralis_Contig826:26483..266841680791683.506655-CDS-P-littoralis_Contig826:26483..26684Pylaiella littoralis U1_48CDSP-littoralis_Contig826 26484..26684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig826.31.1prot_P-littoralis_Contig826.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig826 26263..26684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig826.31.1

>prot_P-littoralis_Contig826.31.1 ID=prot_P-littoralis_Contig826.31.1|Name=mRNA_P-littoralis_Contig826.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
MRWIPDFNNWVLMLPPANAGALQIGEELAYWQRAKGAPGGAFVLDVKRAF
LVAKKAGLREPHPRPRRCRWRWTRRLRKSELGPCQRPRW*
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mRNA from alignment at P-littoralis_Contig826:26196..26770+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig826.31.1 ID=mRNA_P-littoralis_Contig826.31.1|Name=mRNA_P-littoralis_Contig826.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=575bp|location=Sequence derived from alignment at P-littoralis_Contig826:26196..26770+ (Pylaiella littoralis U1_48)
CAGCATCCACGAGTTCACGGAGACAACTCGCCGCTGGGAACGCGGCGCCG
ATGGCGAACTCCACCAAATGCGATGGATACCTGATTTCAATAACTGGGTG
CTCATGTTGCCCCCGGCAAACGCAGGTGCCCTTCAGGTGAGACAGACAGG
ACGCCGGGTGTCCGGACGCCGGGTGTGTTGTTGCTCATTGTGGGGCGCAA
AAGACGTACGGAGCTTTATGAAGTGTTCATTAGTTTGACCCCTCGGCCGG
TGCGCTGTCTGCTCTTTGAAATTTTTCGCGGCCCCAAGATTGGCGAAGAG
CTAGCTTATTGGCAGAGAGCGAAGGGAGCGCCAGGTGGGGCATTTGTGTT
GGATGTGAAACGAGCGTTTCTGGTGGCGAAGAAGGCCGGGCTGAGGGAGC
CACACCCGAGGCCCCGGCGGTGCCGATGGAGGTGGACAAGGCGGCTGCGG
AAGAGCGAACTCGGTCCCTGTCAGCGACCCCGTTGGTGATGCTGTTTTCG
ATGTTGTCGTTCGTGGGGGGCGTGGCGACAAGGTTGCCGTTGCTGCTGCC
GTTGGCGGCAATGATGATGATATGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig826:26196..26770+

>mRNA_P-littoralis_Contig826.31.1 ID=mRNA_P-littoralis_Contig826.31.1|Name=mRNA_P-littoralis_Contig826.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig826:26196..26770+ (Pylaiella littoralis U1_48)
ATGCGATGGATACCTGATTTCAATAACTGGGTGCTCATGTTGCCCCCGGC
AAACGCAGGTGCCCTTCAGATTGGCGAAGAGCTAGCTTATTGGCAGAGAG
CGAAGGGAGCGCCAGGTGGGGCATTTGTGTTGGATGTGAAACGAGCGTTT
CTGGTGGCGAAGAAGGCCGGGCTGAGGGAGCCACACCCGAGGCCCCGGCG
GTGCCGATGGAGGTGGACAAGGCGGCTGCGGAAGAGCGAACTCGGTCCCT
GTCAGCGACCCCGTTGGTGA
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