mRNA_P-littoralis_Contig826.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig826.30.1
Unique NamemRNA_P-littoralis_Contig826.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig826.30.1 vs. uniprot
Match: A0A6H5JS69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS69_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 5.460e-60
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 1 
Query:    1 MPWEDDNALADDQANLRFLERVRASIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRG 300
            MPWEDDNALADDQANLRFLERVR SIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRG
Sbjct:    1 MPWEDDNALADDQANLRFLERVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRG 100
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BLAST of mRNA_P-littoralis_Contig826.30.1 vs. uniprot
Match: A0A6H5KB14_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB14_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 1.090e-41
Identity = 72/100 (72.00%), Postives = 84/100 (84.00%), Query Frame = 1 
Query:    1 MPWEDDNALADDQANLRFLERVRASIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRG 300
            M W+D+NA ADDQANL FLE +R  ID +LSSG++EDG+ALGACS+++E+A SFK  LGS DT VILPGYEGLLRRPM VD TAQALLN ADSADGG +G
Sbjct:   17 MSWKDNNAFADDQANLLFLESMRERIDAMLSSGTMEDGLALGACSDVVEHALSFKLDLGSGDTVVILPGYEGLLRRPMCVDVTAQALLNGADSADGGGKG 116
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BLAST of mRNA_P-littoralis_Contig826.30.1 vs. uniprot
Match: A0A6H5JIG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG7_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 7.260e-31
Identity = 64/93 (68.82%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:   22 ALADDQANLRFLERVRASIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRG 300
            A AD QAN+RFLER+R SID VLS GS+ DGV L AC  +I++A+SFK VL S+DTDVILPGYEGLLRRPM VD TA+ LLN  + ADGG RG
Sbjct:    2 AFADQQANVRFLERMRESIDGVLSDGSMADGVELEACLGIIQHAKSFKDVLCSEDTDVILPGYEGLLRRPMRVDRTAEDLLNGGEGADGGGRG 94
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BLAST of mRNA_P-littoralis_Contig826.30.1 vs. uniprot
Match: D8LFN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN7_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 2.220e-29
Identity = 61/95 (64.21%), Postives = 71/95 (74.74%), Query Frame = 1 
Query:   16 DNALADDQANLRFLERVRASIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRG 300
            D A+ D QAN+ FLE +R SID VLS  S+ D VALGA   MIE+A+SFK VL S+DTDVIL GYEGL+RRP+ V  TA+A LN  DSADGG RG
Sbjct:    4 DMAVVDHQANVCFLESMRESIDEVLSGSSMADDVALGAHLGMIEHAKSFKDVLCSKDTDVILSGYEGLVRRPIRVGRTAEAFLNGVDSADGGGRG 98
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig826.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JS69_9PHAE5.460e-6099.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB14_9PHAE1.090e-4172.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIG7_9PHAE7.260e-3168.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFN7_ECTSI2.220e-2964.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig826contigP-littoralis_Contig826:24653..25419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size300
Hectar predicted targeting categoryother localisation
Exons2
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791683.4157774-CDS-P-littoralis_Contig826:24652..248561680791683.4157774-CDS-P-littoralis_Contig826:24652..24856Pylaiella littoralis U1_48CDSP-littoralis_Contig826 24653..24856 +
1680791683.4294388-CDS-P-littoralis_Contig826:25323..254191680791683.4294388-CDS-P-littoralis_Contig826:25323..25419Pylaiella littoralis U1_48CDSP-littoralis_Contig826 25324..25419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig826.30.1prot_P-littoralis_Contig826.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig826 24653..25419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig826.30.1

>prot_P-littoralis_Contig826.30.1 ID=prot_P-littoralis_Contig826.30.1|Name=mRNA_P-littoralis_Contig826.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MPWEDDNALADDQANLRFLERVRASIDVVLSSGSVEDGVALGACSEMIEY
ARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRG
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mRNA from alignment at P-littoralis_Contig826:24653..25419+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig826.30.1 ID=mRNA_P-littoralis_Contig826.30.1|Name=mRNA_P-littoralis_Contig826.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=767bp|location=Sequence derived from alignment at P-littoralis_Contig826:24653..25419+ (Pylaiella littoralis U1_48)
ATGCCGTGGGAGGATGACAACGCGCTCGCGGATGACCAAGCGAACCTCCG
TTTCTTGGAGCGCGTGAGGGCAAGTATCGATGTCGTGCTCTCGAGCGGTA
GCGTGGAAGACGGTGTGGCACTTGGTGCATGCTCGGAGATGATCGAGTAC
GCTAGGAGCTTCAAGCACGTGTTGGGCAGCCAAGATACGGACGTCATCCT
ACCGGTAAGAGCACCAGACGCACGCACGGCATTATCCAGCTTGGGGCGTG
GTTTTGGCACGGCCGACCTCGGCATAATACCGTAATCTTCGGGGTCGTAC
ACCCCCCGTGGTGTTCATGGAAAAAATAAAGTCCCCATCCCATTTGCTCT
ATTTTCCCCCGAGTATGCGCAAGGAAAAAATCTAGAGGCAAAGTTCATCC
CCTCCCAGGGTTGGCGGCAACGACGACCACGGTGTTTCATGTCTTGGTGT
AGCGCGCAATGTTTCGAGCACGACGTGCCACAGTCATCGCTGCGAAACAT
TAGGTGGGTGTACTTCCGCGAAGGAACTGGTCGCGTTTCATGCTTCATCA
AAACCCAGTGTATTGGGTGAGCAATTTTTGTGCACCCATGCATCGTGCAC
GTGCTATAGGCACACCATGGGAGCAAAATGATGCCACCAGAAACACAATC
GCCTCCGGTCGTTTTTTGCAGGGATACGAAGGATTGTTGAGGCGACCCAT
GCTCGTGGATGCAACGGCTCAAGCCCTGCTCAACGAGGCGGACAGCGCGG
ACGGTGGGACCAGGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig826:24653..25419+

>mRNA_P-littoralis_Contig826.30.1 ID=mRNA_P-littoralis_Contig826.30.1|Name=mRNA_P-littoralis_Contig826.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig826:24653..25419+ (Pylaiella littoralis U1_48)
ATGCCGTGGGAGGATGACAACGCGCTCGCGGATGACCAAGCGAACCTCCG
TTTCTTGGAGCGCGTGAGGGCAAGTATCGATGTCGTGCTCTCGAGCGGTA
GCGTGGAAGACGGTGTGGCACTTGGTGCATGCTCGGAGATGATCGAGTAC
GCTAGGAGCTTCAAGCACGTGTTGGGCAGCCAAGATACGGACGTCATCCT
ACCGGGATACGAAGGATTGTTGAGGCGACCCATGCTCGTGGATGCAACGG
CTCAAGCCCTGCTCAACGAGGCGGACAGCGCGGACGGTGGGACCAGGGGG
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