mRNA_P-littoralis_Contig826.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig826.25.1
Unique NamemRNA_P-littoralis_Contig826.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig826.25.1 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 9.760e-16
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:   16 GLRGDTDRAVSVVLERGDALFNGRLDWLGTLWAEVKGLPPTTHLIVACW 162
            GL GDT+R V+ V +RGDALFNGRLDWLG LWA VKGL PT  LI+A W
Sbjct:  115 GLHGDTNRVVAAVHKRGDALFNGRLDWLGELWAVVKGLQPTADLILARW 163
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig826.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIR5_9PHAE9.760e-1671.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig826contigP-littoralis_Contig826:21470..21636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size169
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791683.3734894-CDS-P-littoralis_Contig826:21471..216361680791683.3734894-CDS-P-littoralis_Contig826:21471..21636Pylaiella littoralis U1_48CDSP-littoralis_Contig826 21472..21636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig826.25.1prot_P-littoralis_Contig826.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig826 21472..21636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig826.25.1

>prot_P-littoralis_Contig826.25.1 ID=prot_P-littoralis_Contig826.25.1|Name=mRNA_P-littoralis_Contig826.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
NHIEDGLRGDTDRAVSVVLERGDALFNGRLDWLGTLWAEVKGLPPTTHLI
VACWT
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mRNA from alignment at P-littoralis_Contig826:21470..21636-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig826.25.1 ID=mRNA_P-littoralis_Contig826.25.1|Name=mRNA_P-littoralis_Contig826.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=167bp|location=Sequence derived from alignment at P-littoralis_Contig826:21470..21636- (Pylaiella littoralis U1_48)
AACCATATCGAGGACGGTCTTCGCGGGGACACAGATCGTGCCGTGTCGGT
GGTGCTTGAGAGAGGGGACGCCCTCTTCAACGGGCGTCTCGACTGGCTCG
GTACACTTTGGGCGGAGGTCAAAGGTCTTCCTCCTACAACGCACTTGATT
GTCGCGTGTTGGACGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig826:21470..21636-

>mRNA_P-littoralis_Contig826.25.1 ID=mRNA_P-littoralis_Contig826.25.1|Name=mRNA_P-littoralis_Contig826.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig826:21470..21636- (Pylaiella littoralis U1_48)
AACCATATCGAGGACGGTCTTCGCGGGGACACAGATCGTGCCGTGTCGGT
GGTGCTTGAGAGAGGGGACGCCCTCTTCAACGGGCGTCTCGACTGGCTCG
GTACACTTTGGGCGGAGGTCAAAGGTCTTCCTCCTACAACGCACTTGATT
GTCGCGTGTTGGACG
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