mRNA_P-littoralis_Contig826.1.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig826.1.2
Unique NamemRNA_P-littoralis_Contig826.1.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig826.1.2 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 1.180e-55
Identity = 101/205 (49.27%), Postives = 136/205 (66.34%), Query Frame = 3 
Query:  225 PWRKEGVDGLYFDRDADS-YDNVDGDPVFSTGIAVSSDGFNYWSFGGKVYNVNATYVALSCLSPALLRRLRSWSLVCAGSKGR-WEEEVGGLMETIQHLEKGCRARMKTQDGHSVTVFVRMGLLTAMLDTPYHSAWSNTKGSNSKTKKPCSTCEVTQEELSDHQYNIGANLRTQDGIDDSLLYVKAGDTAADQARRSRERGVVVP 833
            PWR++G  G +FDR A   + N+ G PVFSTG+A SSD FNY+S  GK Y+VNAT+V L CLSPALLRRLRSW L   G  G  WE +V  LM+ I+ L+ GC+A +   D  ++T  VRMGLLTA LD+P HS W+N K  N+KT++ C  C V +++L + +Y+I  N R+ DG+ + L  V + +   +Q + SR  GVVVP
Sbjct:    3 PWRQQGYHGWFFDRRASGVHANLTGLPVFSTGLACSSDAFNYFSLSGKRYSVNATFVGLGCLSPALLRRLRSWHLATLGLPGAAWELDVLPLMKIIRLLQNGCKAEIAVGDKQTITALVRMGLLTANLDSPMHSLWTNQKHHNAKTERACQACTVPRKDLGNPRYDIVKNARSADGLREDLALVASIEKRQEQLKMSRALGVVVP 207
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BLAST of mRNA_P-littoralis_Contig826.1.2 vs. uniprot
Match: D7FWW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW9_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 9.480e-20
Identity = 49/113 (43.36%), Postives = 70/113 (61.95%), Query Frame = 3 
Query:  495 METIQHLEKGCRARMKTQDGHSVTVFVRMGLLTAMLDTPYHSAWSNTKGSNSKTKKPCSTCEVTQEELSDHQYNIGANLRTQDGIDDSLLYVKAGDTAADQARRSRERGVVVP 833
            M+ I+ L+ GC+A     D  +VT  VR+GLLTA LD+P HS W+N K  N+KT++ C  C V + +L + +Y+I  N RT DG+ + L  V A +   D+ + SR  GVVVP
Sbjct:    1 MKIIRRLQNGCKAEFSIGDKQTVTALVRLGLLTANLDSPLHSLWTNQKHHNAKTERACQACVVPRRDLGNPKYDIVKNARTADGLREDLSRVAATEKKQDRDKLSRALGVVVP 113
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BLAST of mRNA_P-littoralis_Contig826.1.2 vs. uniprot
Match: A0A6H5JXS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXS6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 8.020e-16
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 3 
Query:  327 SSDGFNYWSFGGKVYNVNATYVALSCLSPALLRRLRSWSLVCAGSKGR-WEEEVGGLMETIQHLEKGCRARMKTQDGHSVT 566
            SSD FNY+S  G+ ++V+AT+V L CLSP LLRRLRSW L   G  G  WE ++  LME I+ L+ GC+  +   D  +VT
Sbjct:   60 SSDAFNYFSLSGRKHSVSATFVGLGCLSPTLLRRLRSWYLATLGLPGAAWELDILPLMEIIRWLQNGCKTEISIGDKQTVT 140
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BLAST of mRNA_P-littoralis_Contig826.1.2 vs. uniprot
Match: A0A6H5KPX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX4_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 3.230e-12
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 3 
Query:  558 SVTVFVRMGLLTAMLDTPYHSAWSNTKGSNSKTKKPCSTCEVTQEELSDHQYNIGANLRTQDGIDDSLLYVKAGDTAADQARRSRERGVVVP 833
            +V   VR+GLLTA LD+P HS W+N K  N+KT   C  C V + +L + +Y+I  N RT DG+ + L  V A +   D+ + SR  GVVVP
Sbjct:   19 NVEALVRLGLLTANLDSPMHSLWANQKHHNAKTT--CQACVVPRRDLGNPKYDIVKNARTADGLKEDLDRVAATEKKQDRVKLSRALGVVVP 108
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig826.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FZI4_ECTSI1.180e-5549.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWW9_ECTSI9.480e-2043.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXS6_9PHAE8.020e-1649.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPX4_9PHAE3.230e-1244.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig826contigP-littoralis_Contig826:1633..3002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size872
Hectar predicted targeting categoryother localisation
Exons2
Cds size723
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791683.2279108-UTR-P-littoralis_Contig826:1632..16531680791683.2279108-UTR-P-littoralis_Contig826:1632..1653Pylaiella littoralis U1_48UTRP-littoralis_Contig826 1633..1653 -
1680791683.2694101-UTR-P-littoralis_Contig826:2874..30021680791683.2694101-UTR-P-littoralis_Contig826:2874..3002Pylaiella littoralis U1_48UTRP-littoralis_Contig826 2875..3002 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791683.2402291-CDS-P-littoralis_Contig826:1653..19381680791683.2402291-CDS-P-littoralis_Contig826:1653..1938Pylaiella littoralis U1_48CDSP-littoralis_Contig826 1654..1938 -
1680791683.2566292-CDS-P-littoralis_Contig826:2436..28741680791683.2566292-CDS-P-littoralis_Contig826:2436..2874Pylaiella littoralis U1_48CDSP-littoralis_Contig826 2437..2874 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig826.1.2prot_P-littoralis_Contig826.1.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig826 1654..2874 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig826.1.2

>prot_P-littoralis_Contig826.1.2 ID=prot_P-littoralis_Contig826.1.2|Name=mRNA_P-littoralis_Contig826.1.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=241bp
MTSQELNEQVPTFLGEGFVTFLTNPRRVKEQRPWRKEGVDGLYFDRDADS
YDNVDGDPVFSTGIAVSSDGFNYWSFGGKVYNVNATYVALSCLSPALLRR
LRSWSLVCAGSKGRWEEEVGGLMETIQHLEKGCRARMKTQDGHSVTVFVR
MGLLTAMLDTPYHSAWSNTKGSNSKTKKPCSTCEVTQEELSDHQYNIGAN
LRTQDGIDDSLLYVKAGDTAADQARRSRERGVVVPDVDTR*
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mRNA from alignment at P-littoralis_Contig826:1633..3002-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig826.1.2 ID=mRNA_P-littoralis_Contig826.1.2|Name=mRNA_P-littoralis_Contig826.1.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1370bp|location=Sequence derived from alignment at P-littoralis_Contig826:1633..3002- (Pylaiella littoralis U1_48)
TCAGACGCAAGCGGCGACGGGTCGACGGCAGCAACCTTGAGAGCGTTTGG
GAAAAAATCGGTGACCCCGTCAAGGTGCAAGTGGGTGCCCTCGATGCCCC
CTGCCTCGTCTTACCGGCGGGTACCGATATGACCTCGCAGGAATTGAACG
AGCAGGTGCCTACATTCCTCGGTGAAGGGTTTGTTACTTTTCTCACCAAC
CCCAGACGGGTGAAGGAACAACGACCGTGGAGGAAGGAGGGCGTGGATGG
CTTGTACTTCGACAGAGACGCCGATAGCTACGACAACGTTGATGGCGACC
CTGTATTTTCGACGGGGATTGCTGTCTCCAGCGACGGCTTCAACTATTGG
TCGTTCGGGGGGAAAGTCTACAACGTCAACGCCACGTACGTGGCTCTGAG
CTGTTTGTCACCCGCTCTCCTACGACGCCTACGTTCATGGTCGTTGGTGT
GTGCGGGTTCGAAGGGGCGTTGGGAGGAGGAGGTCGGCGGACTAATGGAA
ACCATTCAGCACCTCGAGAAAGGCTGTCGCGCAAGAATGAAGACTCAAGA
CGGGCACAGTGTCACTGTGAGTATCTGTTTGCATTTTCTTTTCTTTACAC
TTATTTCTACCACAGAGTGATCAGGGAGTCAGGCCTGAATGCCAGCGCTT
GCCATTCCGCGCAATGTTTCGGTTTCGTGCAGGCGAGCGCAGTTTTGTGA
TATTAAGTTATTGCCCCGCGTGCCGCAAATGTAATTTCATTATTTACCTG
GTTTTGTTCCCCGGCCTGATGCCCCATGCCTCTCCACTGTCTGCAACTTT
ATCGTTTTTGTTGGTGATGTTTCTTTGTTAAATTTAGTGTTTTCGTCCCT
ACCATCTTTTTCGACAGCGTCTCGTCATATTCAGTGCGATCGGGTGTTTT
CCTGGTACGTCACTGCTGTGTTGATAGCCAGTGACCGCTACATACCTCAG
AGGTAACGGTGTTGAATAACCCTAGAGAATAACGACAACCGCTGCGTTAT
TGCTTTGAGAGTATGCATGTCATGCGGACTCACTTCTTGTTGGTTTCATT
CCCCTCTCATTTAGGTGTTTGTGCGCATGGGCTTGTTGACGGCAATGCTC
GACACCCCTTATCACAGTGCGTGGTCCAACACGAAGGGCTCAAACTCCAA
AACCAAGAAGCCGTGTTCGACGTGCGAGGTCACCCAGGAGGAGCTCTCTG
ACCACCAGTACAACATCGGCGCCAACCTTCGCACGCAGGATGGCATCGAC
GACTCTCTGTTGTACGTCAAAGCCGGGGACACAGCCGCGGACCAGGCTCG
CCGATCTCGTGAGAGAGGGGTAGTGGTTCCGGACGTGGATACCCGCTGAA
GAAGCTGGTGTTCGACCGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig826:1633..3002-

>mRNA_P-littoralis_Contig826.1.2 ID=mRNA_P-littoralis_Contig826.1.2|Name=mRNA_P-littoralis_Contig826.1.2|organism=Pylaiella littoralis U1_48|type=CDS|length=723bp|location=Sequence derived from alignment at P-littoralis_Contig826:1633..3002- (Pylaiella littoralis U1_48)
ATGACCTCGCAGGAATTGAACGAGCAGGTGCCTACATTCCTCGGTGAAGG
GTTTGTTACTTTTCTCACCAACCCCAGACGGGTGAAGGAACAACGACCGT
GGAGGAAGGAGGGCGTGGATGGCTTGTACTTCGACAGAGACGCCGATAGC
TACGACAACGTTGATGGCGACCCTGTATTTTCGACGGGGATTGCTGTCTC
CAGCGACGGCTTCAACTATTGGTCGTTCGGGGGGAAAGTCTACAACGTCA
ACGCCACGTACGTGGCTCTGAGCTGTTTGTCACCCGCTCTCCTACGACGC
CTACGTTCATGGTCGTTGGTGTGTGCGGGTTCGAAGGGGCGTTGGGAGGA
GGAGGTCGGCGGACTAATGGAAACCATTCAGCACCTCGAGAAAGGCTGTC
GCGCAAGAATGAAGACTCAAGACGGGCACAGTGTCACTGTGTTTGTGCGC
ATGGGCTTGTTGACGGCAATGCTCGACACCCCTTATCACAGTGCGTGGTC
CAACACGAAGGGCTCAAACTCCAAAACCAAGAAGCCGTGTTCGACGTGCG
AGGTCACCCAGGAGGAGCTCTCTGACCACCAGTACAACATCGGCGCCAAC
CTTCGCACGCAGGATGGCATCGACGACTCTCTGTTGTACGTCAAAGCCGG
GGACACAGCCGCGGACCAGGCTCGCCGATCTCGTGAGAGAGGGGTAGTGG
TTCCGGACGTGGATACCCGCTGA
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