mRNA_P-littoralis_Contig826.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig826.29.1
Unique NamemRNA_P-littoralis_Contig826.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig826.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig826contigP-littoralis_Contig826:23759..24641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size295
Hectar predicted targeting categoryother localisation
Exons2
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791682.8396292-CDS-P-littoralis_Contig826:23758..240141680791682.8396292-CDS-P-littoralis_Contig826:23758..24014Pylaiella littoralis U1_48CDSP-littoralis_Contig826 23759..24014 +
1680791682.8499026-CDS-P-littoralis_Contig826:24603..246051680791682.8499026-CDS-P-littoralis_Contig826:24603..24605Pylaiella littoralis U1_48CDSP-littoralis_Contig826 24604..24605 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791682.8636475-UTR-P-littoralis_Contig826:24605..246411680791682.8636475-UTR-P-littoralis_Contig826:24605..24641Pylaiella littoralis U1_48UTRP-littoralis_Contig826 24606..24641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig826.29.1prot_P-littoralis_Contig826.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig826 23759..24605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig826.29.1

>prot_P-littoralis_Contig826.29.1 ID=prot_P-littoralis_Contig826.29.1|Name=mRNA_P-littoralis_Contig826.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
QCHSVSWTTKSYTHEVVRDPVNSTGGQLVCEVELWGGVIFRHTSGVPLHF
ARYRHPRIDPFTAHAAAWHIDLRHCGRGSAAPGFE*
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mRNA from alignment at P-littoralis_Contig826:23759..24641+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig826.29.1 ID=mRNA_P-littoralis_Contig826.29.1|Name=mRNA_P-littoralis_Contig826.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=883bp|location=Sequence derived from alignment at P-littoralis_Contig826:23759..24641+ (Pylaiella littoralis U1_48)
CAATGCCATTCAGTGAGTTGGACTACCAAGTCGTACACCCACGAAGTTGT
GAGGGATCCGGTCAACTCTACGGGTGGTCAACTCGTGTGTGAAGTTGAGC
TTTGGGGGGGTGTTATATTCCGTCATACATCAGGCGTACCGCTCCATTTC
GCGAGATATCGACATCCACGGATTGATCCATTCACTGCGCACGCTGCAGC
CTGGCACATTGATCTTCGGCACTGCGGGCGAGGGAGTGCTGCACCGGGCT
TTGAATGTGAGTGGTTCTTTTGCCATGACTGTCAACGCCCGCGAGGATGG
GCTTTGCTCGATGAAGTGATGTGCGCGCCAAGGAAACCTGTGTCGACACC
CACGCGGGCTGTACAGCGGTACGCTGCTGCGTTGCCGCAGTGATGTAGTA
AAGGATACGCTTGAGTCTATGGGTGACGACCGCCGACATAAGTTATGGGT
GCTAACGATGATGCTCTATTCAGCACAAATTGCGCACATGCGACTGGTTC
GTGGTATCGACAGAGATTTCGGAATTTTTATTTTTTTATTTTGAAAGTCC
TTGTCCGCGGTAAACGATGATTCACACCACAGCTCGCGACAGCACCGACC
GAATTCAACATCGCCTCCTCACCTGCTGTGGCCAGTGGTTCTTATTCTTG
GCATCGATGCCTCAATGTGTGCAGTTGTAAGTTTGCATTGCGCATGTTTA
AGTACCGTGTGTGATGCCCAGCAATGGTTTTTATATGCGGAAATGTGTAT
GTGCGCACTCCTGTTACCGTGTGTTTGTGGCATGCCGCACCCCGATGTCA
ACATCGTACAAAAATGGCGGCTGCTGTCGGTGTACTATGTAGCAGGATGG
GCCTCTGTCGGAAAAAGCGCGTGGGGGTCGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig826:23759..24641+

>mRNA_P-littoralis_Contig826.29.1 ID=mRNA_P-littoralis_Contig826.29.1|Name=mRNA_P-littoralis_Contig826.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig826:23759..24641+ (Pylaiella littoralis U1_48)
CAATGCCATTCAGTGAGTTGGACTACCAAGTCGTACACCCACGAAGTTGT
GAGGGATCCGGTCAACTCTACGGGTGGTCAACTCGTGTGTGAAGTTGAGC
TTTGGGGGGGTGTTATATTCCGTCATACATCAGGCGTACCGCTCCATTTC
GCGAGATATCGACATCCACGGATTGATCCATTCACTGCGCACGCTGCAGC
CTGGCACATTGATCTTCGGCACTGCGGGCGAGGGAGTGCTGCACCGGGCT
TTGAATGA
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