mRNA_P-littoralis_Contig826.15.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig826.15.2
Unique NamemRNA_P-littoralis_Contig826.15.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig826.15.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig826contigP-littoralis_Contig826:11168..12828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size852
Hectar predicted targeting categoryother localisation
Exons3
Cds size558
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791682.70744-UTR-P-littoralis_Contig826:11167..113121680791682.70744-UTR-P-littoralis_Contig826:11167..11312Pylaiella littoralis U1_48UTRP-littoralis_Contig826 11168..11312 +
1680791682.7670646-UTR-P-littoralis_Contig826:12679..128281680791682.7670646-UTR-P-littoralis_Contig826:12679..12828Pylaiella littoralis U1_48UTRP-littoralis_Contig826 12680..12828 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791682.72322-CDS-P-littoralis_Contig826:11312..114651680791682.72322-CDS-P-littoralis_Contig826:11312..11465Pylaiella littoralis U1_48CDSP-littoralis_Contig826 11313..11465 +
1680791682.734599-CDS-P-littoralis_Contig826:11947..121061680791682.734599-CDS-P-littoralis_Contig826:11947..12106Pylaiella littoralis U1_48CDSP-littoralis_Contig826 11948..12106 +
1680791682.7519143-CDS-P-littoralis_Contig826:12433..126791680791682.7519143-CDS-P-littoralis_Contig826:12433..12679Pylaiella littoralis U1_48CDSP-littoralis_Contig826 12434..12679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig826.15.2prot_P-littoralis_Contig826.15.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig826 11313..12679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig826.15.2

>prot_P-littoralis_Contig826.15.2 ID=prot_P-littoralis_Contig826.15.2|Name=mRNA_P-littoralis_Contig826.15.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=186bp
MKSTLNHDFHEVLGNNTKGAVRKGAENLLKAGEPITSETIFPAARRVFRN
QHSKVEEMVGNMVMERTVNPARHCRGTPARSPEDRVPMRTIEVFGCAPSS
FFNFVAVPMQAFMMNDLRCKLLAEVETLRNATRANDDGGVDDGEDPVGFR
AARVLVGLVDKWRVLPIGGGNTAADKVFTQRCVPE*
back to top

mRNA from alignment at P-littoralis_Contig826:11168..12828+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig826.15.2 ID=mRNA_P-littoralis_Contig826.15.2|Name=mRNA_P-littoralis_Contig826.15.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1661bp|location=Sequence derived from alignment at P-littoralis_Contig826:11168..12828+ (Pylaiella littoralis U1_48)
CCCTGTATTACTTCGCACAGCCGCTTTCAGTAAGTAAGAGTAGTGATTTC
GTTTGTCTGTTTAATGCTCATTTGCCGCTATTGCCCCTTTCTATGCGTCG
CGTGCAACCCATCTCGTAGAGCGCTTGGTTCGCTCGGTAATTCCCATGAA
GTCCACCCTAAATCACGATTTCCACGAGGTGTTGGGTAACAACACCAAGG
GCGCCGTCCGCAAGGGGGCGGAGAACCTTCTGAAGGCGGGGGAGCCTATC
ACGAGCGAGACCATCTTCCCTGCCGCCCGTCGAGTGTTTCGGAACCAGGT
TTGTCAAGGGGCACCCTGATGGGAGTTTTACAAATCATTGACATGCCGTC
GGCTATCCCCCCCCCCCCTCCACTAGAGCAGAAGATAATGCAGGGGGAGT
TTGTTATTTTTGTTTCCCCCCCCCCCTCCCATCTTCCTGTGTTTTGCTAC
ATACGTGTTCTCATGTTCGATCAAAGCATAACGACTCATTTTGAATCCAC
GGCCACTGGTGCCGTATATTTCATGTATTTCATCTCTCAGGTAGTCTGGT
ACATTAGGGATTCCTCTTGTAACACATTTGTTAAAGTTTTGTCTGTTTGT
TGTGTTGCACGCGAACAGCGGCCTCGAGCTGTGGTGTTGACGCGTTCGTG
TGGTGGAGCGGCACAAATAATGTTGAGCCCAAAAGAAAAAACATCGCATA
ACGCTTGCTGATTGGTACGTTGACCCTGGTCTTGCTTGAAATGTTTACAC
ATTGCTCTTCTCTCTGTTCCCCCATGCCAGCACTCTAAGGTGGAGGAGAT
GGTTGGCAACATGGTCATGGAGCGCACGGTGAACCCGGCAAGGCACTGCC
GGGGAACCCCCGCAAGGTCGCCTGAAGACCGCGTCCCGATGCGCACGATC
GAGGTGTTTGGCTGCGCCCCATCCTCATTCTTCAACTTCGTAAGTTTCTC
GTTATCATTTGCTCGGTCTTGACGCGGAGGCTGTTTCTGTATGAATATTG
GTGATCCCGTTGCAAGGAAACACGTGTTGACCCCCGCGCGCGCCCCCGCC
ATGAACAAGTACTTTAGAACCCACAAATCCCACTCGTAGTTGGCTTTTTG
AGGTGGCGTTGCCATGGACTTGTCAAGTCTTGCGTGTCGAGGGTGTCCAA
CTAGACATTATCGATCCTCAATATCACCGAGCAATCCATGAAGCACAACA
ACTAACAAATTTCGTTTGTGTGTATTTTTTTTATTCTTCGTATTGCACTT
TCTTGTTTGGAGCCAGGTGGCTGTACCCATGCAGGCGTTTATGATGAACG
ACCTGAGGTGCAAGCTGCTCGCCGAAGTGGAGACACTTCGCAACGCGACC
CGCGCCAACGACGATGGTGGTGTGGATGATGGGGAGGACCCCGTAGGGTT
CCGTGCGGCACGGGTGCTCGTGGGTCTGGTGGACAAGTGGAGGGTGCTCC
CTATCGGCGGTGGAAACACCGCCGCCGACAAGGTGTTCACCCAGAGGTGC
GTGCCCGAATAGAACCCCATCGTGTACTACCTCGGCGAGCGCTCTGTAGT
GTCATGTGTACACGTGCGGTAGGTGCATGTATTTTCTGGGGTGGCACCTA
ACCTGTACCTGGTATATCCACACCTCAGATGAGCTGTAGCGGTACATGCG
TGTTTGTAGAT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig826:11168..12828+

>mRNA_P-littoralis_Contig826.15.2 ID=mRNA_P-littoralis_Contig826.15.2|Name=mRNA_P-littoralis_Contig826.15.2|organism=Pylaiella littoralis U1_48|type=CDS|length=558bp|location=Sequence derived from alignment at P-littoralis_Contig826:11168..12828+ (Pylaiella littoralis U1_48)
ATGAAGTCCACCCTAAATCACGATTTCCACGAGGTGTTGGGTAACAACAC
CAAGGGCGCCGTCCGCAAGGGGGCGGAGAACCTTCTGAAGGCGGGGGAGC
CTATCACGAGCGAGACCATCTTCCCTGCCGCCCGTCGAGTGTTTCGGAAC
CAGCACTCTAAGGTGGAGGAGATGGTTGGCAACATGGTCATGGAGCGCAC
GGTGAACCCGGCAAGGCACTGCCGGGGAACCCCCGCAAGGTCGCCTGAAG
ACCGCGTCCCGATGCGCACGATCGAGGTGTTTGGCTGCGCCCCATCCTCA
TTCTTCAACTTCGTGGCTGTACCCATGCAGGCGTTTATGATGAACGACCT
GAGGTGCAAGCTGCTCGCCGAAGTGGAGACACTTCGCAACGCGACCCGCG
CCAACGACGATGGTGGTGTGGATGATGGGGAGGACCCCGTAGGGTTCCGT
GCGGCACGGGTGCTCGTGGGTCTGGTGGACAAGTGGAGGGTGCTCCCTAT
CGGCGGTGGAAACACCGCCGCCGACAAGGTGTTCACCCAGAGGTGCGTGC
CCGAATAG
back to top