mRNA_P-littoralis_Contig826.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig826.6.1
Unique NamemRNA_P-littoralis_Contig826.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig826.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig826contigP-littoralis_Contig826:3726..5478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size489
Hectar predicted targeting categoryother localisation
Exons2
Cds size486
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791682.5652747-CDS-P-littoralis_Contig826:3726..38991680791682.5652747-CDS-P-littoralis_Contig826:3726..3899Pylaiella littoralis U1_48CDSP-littoralis_Contig826 3727..3899 -
1680791682.5755482-CDS-P-littoralis_Contig826:5165..54781680791682.5755482-CDS-P-littoralis_Contig826:5165..5478Pylaiella littoralis U1_48CDSP-littoralis_Contig826 5166..5478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig826.6.1prot_P-littoralis_Contig826.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig826 3727..5478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig826.6.1

>prot_P-littoralis_Contig826.6.1 ID=prot_P-littoralis_Contig826.6.1|Name=mRNA_P-littoralis_Contig826.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=162bp
HSVGVYVHACCVCVVMEAGDERGQSRGSGRTRLIPQPGRGFTCSACRWRF
SSLRDGRAHISTCKGGEPALSEPIAPAASDAARSSVGGQGLGASGDPGGE
AIEDGASGMYDDGNASDGADDSPADRTKNTKAPWVDLLHEFLSAYRDAKC
VDGDELRFDWSA
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mRNA from alignment at P-littoralis_Contig826:3726..5478-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig826.6.1 ID=mRNA_P-littoralis_Contig826.6.1|Name=mRNA_P-littoralis_Contig826.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1753bp|location=Sequence derived from alignment at P-littoralis_Contig826:3726..5478- (Pylaiella littoralis U1_48)
CACAGCGTGGGGGTGTATGTGCATGCTTGTTGTGTGTGTGTCGTCATGGA
GGCTGGCGATGAGAGGGGACAGAGCAGAGGATCTGGTCGAACTCGACTTA
TCCCTCAACCTGGCCGCGGATTTACGTGCAGCGCCTGTCGGTGGCGATTC
TCATCCCTCCGCGACGGAAGAGCCCATATTTCAACTTGCAAAGGGGGAGA
GCCAGCCCTTTCAGAGCCTATTGCACCTGCTGCGAGCGATGCCGCTAGGT
CAAGCGTGGGCGGTCAAGGATTGGGTGCTTCAGGTGATCCGGGTGGCGAG
GCTATAGAAGACGGTGAGTTGACATGGACGAGGGAGAGATGAGCAGAGCG
TGATCTTAGATTGGCACCCTCCCGGCGCTACGATACAGCAGTGTATTGAA
TGCGACGTATAATATCACCCCCCCTCCCCCCCTGGGCTCTTTTTTCCCTC
GAACGGCGATTACGCCGCCACGAACAGGATACCAATATCAAAATATACGG
TGCGTTTTCACGACATATCTCCAACGCCACGCTTGTCGGCACCGAAAATC
GGGCAAGGGGGAAATACCTGGTACAAAAAAAGTCTTATATTTTCACTCCG
TAGGGGGGGGTCTTATCCTACGCAACCTACTGCTGTATATACACGTATAT
ATACCAGGGGTACTTATATACAGTCGCATATCGTTCTACCCCCCGCATAG
GCAAGGGCAACACCAATAGTGGCCAAACGGTTAGATGGCGGCTTTCTATT
TTTGTCGCATGCATGTTTTTAATTTTTACAAGCAGTTGGTCGGGGATTGC
TGAGCAGAATTCTTGAGTTCCGTGCGATTTGGGTACCGTAAAGTACCGTA
CATTAGCAGGAATGGCTGCTATTTCACCCCGTTGTAGATGTTTCAGGGTG
TCTCCATGCTCCCTGTGTCGCTTCTGTCTTTGCTTTGACCTGCTGCCCCG
CACTTTAGGATAGGCAACACACCACAAAAAATGCAAACAATCGCATGCAA
CCTCTCACCATACGGGGTGCCGGCAAACACCTTCGCACAAGTGCCGGATG
AAAGCAACTTTTTCGCCAAACAGTCGGCTATATTCGTTCGCAGTGATACT
TAAACTCCAAGAACACAATCCCGTCGAAAATAACCCCGGGGTTAACACAT
CATGAACGATGTACCCCGGGGGGCTTCGCACTTGTATCTTGTGGGGGGGG
TTTGGTAGGCTGTTTTCACACAATGTTTCGTATTCTGATCCGATAATTAT
GCGCCCCGAATTGGTGGCCTCGCAAGAAAAAAGCGTTTTCGTAGACCCAG
GGTTAACTTTGTTGTCATTTCCTTAATTATCGACCCTCGTATGCAGACCC
GGGGCGATATTTCTGCGCAACGGTTTCGTTCCATCCCCGTAGACCCCGAC
AAAGGGGTGACGAAGATCCACTTACATGTAGAAACGACTTCATACTTCCT
GTCCCGTGCTCACTCGAAAACATACGATACTGCATGTGCCTTGATCGTTT
TTGACAACGGCAGTATTTAAATCGTATCACGTCGCCTGTGCTCGCTGTTG
CTGCCACTTGCCCCCTCAACTCGGCTCAGGCGCGAGCGGCATGTACGACG
ATGGTAACGCTTCCGATGGCGCCGACGATTCGCCTGCGGACCGAACGAAG
AACACGAAGGCTCCTTGGGTTGACCTGTTGCACGAGTTCCTGAGCGCATA
CCGAGACGCCAAATGCGTAGACGGCGACGAGCTTAGATTCGACTGGTCTG
CTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig826:3726..5478-

>mRNA_P-littoralis_Contig826.6.1 ID=mRNA_P-littoralis_Contig826.6.1|Name=mRNA_P-littoralis_Contig826.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig826:3726..5478- (Pylaiella littoralis U1_48)
CACAGCGTGGGGGTGTATGTGCATGCTTGTTGTGTGTGTGTCGTCATGGA
GGCTGGCGATGAGAGGGGACAGAGCAGAGGATCTGGTCGAACTCGACTTA
TCCCTCAACCTGGCCGCGGATTTACGTGCAGCGCCTGTCGGTGGCGATTC
TCATCCCTCCGCGACGGAAGAGCCCATATTTCAACTTGCAAAGGGGGAGA
GCCAGCCCTTTCAGAGCCTATTGCACCTGCTGCGAGCGATGCCGCTAGGT
CAAGCGTGGGCGGTCAAGGATTGGGTGCTTCAGGTGATCCGGGTGGCGAG
GCTATAGAAGACGGCGCGAGCGGCATGTACGACGATGGTAACGCTTCCGA
TGGCGCCGACGATTCGCCTGCGGACCGAACGAAGAACACGAAGGCTCCTT
GGGTTGACCTGTTGCACGAGTTCCTGAGCGCATACCGAGACGCCAAATGC
GTAGACGGCGACGAGCTTAGATTCGACTGGTCTGCT
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