prot_P-littoralis_Contig825.3.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig825.3.1
Unique Nameprot_P-littoralis_Contig825.3.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length77
Homology
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BLAST of mRNA_P-littoralis_Contig825.3.1 vs. uniprot
Match: A0A6H5KFK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK7_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.300e-16
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 0 
Query:   11 SSPSGDQRVAKNYILDDHDTIRFLDTRGRKLIAIPQAMIADILALVHGLHGHAGVGATLTLVRDRFH 77
            SS  G +R    Y L   D IR+ D +GRKL AIP AM+ADI+ALVH LHGHAGVGATL+L+RD FH
Sbjct:  796 SSQGGSER--DRYSLGTDDVIRYNDGKGRKLPAIPVAMVADIIALVHTLHGHAGVGATLSLLRDHFH 860
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BLAST of mRNA_P-littoralis_Contig825.3.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.340e-16
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 0 
Query:   11 SSPSGDQRVAKNYILDDHDTIRFLDTRGRKLIAIPQAMIADILALVHGLHGHAGVGATLTLVRDRFH 77
            SS  G +R    Y L   D IR+ D +GRKL AIP AM+ADI+ALVH LHGHAGVGATL+L+RD FH
Sbjct: 1318 SSQGGSER--DRYSLGTDDVIRYNDGKGRKLPAIPVAMVADIIALVHTLHGHAGVGATLSLLRDHFH 1382
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig825.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFK7_9PHAE3.300e-1662.69Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEH2_9PHAE3.340e-1662.69RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.340.70coord: 9..77
e-value: 2.7E-6
score: 29.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig825contigP-littoralis_Contig825:7750..7980 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig825.3.1mRNA_P-littoralis_Contig825.3.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig825 7750..7983 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig825.3.1 ID=prot_P-littoralis_Contig825.3.1|Name=mRNA_P-littoralis_Contig825.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=77bp
MSDQQGVDPQSSPSGDQRVAKNYILDDHDTIRFLDTRGRKLIAIPQAMIA
DILALVHGLHGHAGVGATLTLVRDRFH
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