mRNA_P-littoralis_Contig825.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig825.3.1
Unique NamemRNA_P-littoralis_Contig825.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig825.3.1 vs. uniprot
Match: A0A6H5KFK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK7_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.690e-16
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:   34 SSPSGDQRVAKNYILDDHDTIRFLDTRGRKLIAIPQAMIADILALVHGLHGHAGVGATLTLVRDRFH 234
            SS  G +R    Y L   D IR+ D +GRKL AIP AM+ADI+ALVH LHGHAGVGATL+L+RD FH
Sbjct:  796 SSQGGSER--DRYSLGTDDVIRYNDGKGRKLPAIPVAMVADIIALVHTLHGHAGVGATLSLLRDHFH 860
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BLAST of mRNA_P-littoralis_Contig825.3.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.750e-16
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:   34 SSPSGDQRVAKNYILDDHDTIRFLDTRGRKLIAIPQAMIADILALVHGLHGHAGVGATLTLVRDRFH 234
            SS  G +R    Y L   D IR+ D +GRKL AIP AM+ADI+ALVH LHGHAGVGATL+L+RD FH
Sbjct: 1318 SSQGGSER--DRYSLGTDDVIRYNDGKGRKLPAIPVAMVADIIALVHTLHGHAGVGATLSLLRDHFH 1382
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig825.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFK7_9PHAE4.690e-1662.69Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEH2_9PHAE4.750e-1662.69RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig825contigP-littoralis_Contig825:7750..7983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size235
Hectar predicted targeting categoryother localisation
Exons1
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791682.0539854-CDS-P-littoralis_Contig825:7749..79801680791682.0539854-CDS-P-littoralis_Contig825:7749..7980Pylaiella littoralis U1_48CDSP-littoralis_Contig825 7750..7980 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791682.0722227-UTR-P-littoralis_Contig825:7980..79831680791682.0722227-UTR-P-littoralis_Contig825:7980..7983Pylaiella littoralis U1_48UTRP-littoralis_Contig825 7981..7983 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig825.3.1prot_P-littoralis_Contig825.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig825 7750..7980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig825.3.1

>prot_P-littoralis_Contig825.3.1 ID=prot_P-littoralis_Contig825.3.1|Name=mRNA_P-littoralis_Contig825.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=77bp
MSDQQGVDPQSSPSGDQRVAKNYILDDHDTIRFLDTRGRKLIAIPQAMIA
DILALVHGLHGHAGVGATLTLVRDRFH
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mRNA from alignment at P-littoralis_Contig825:7750..7983-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig825.3.1 ID=mRNA_P-littoralis_Contig825.3.1|Name=mRNA_P-littoralis_Contig825.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig825:7750..7983- (Pylaiella littoralis U1_48)
AGTATGTCAGACCAGCAAGGGGTAGACCCACAGAGTAGCCCATCTGGTGA
CCAGAGAGTTGCAAAGAATTACATCCTAGACGATCACGACACCATCCGCT
TTCTTGACACCCGAGGCAGGAAATTAATTGCCATTCCTCAAGCCATGATA
GCTGATATTCTAGCGCTAGTTCACGGCTTACACGGGCACGCAGGAGTAGG
GGCTACACTCACTCTTGTTCGCGACCGTTTCCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig825:7750..7983-

>mRNA_P-littoralis_Contig825.3.1 ID=mRNA_P-littoralis_Contig825.3.1|Name=mRNA_P-littoralis_Contig825.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig825:7750..7983- (Pylaiella littoralis U1_48)
ATGTCAGACCAGCAAGGGGTAGACCCACAGAGTAGCCCATCTGGTGACCA
GAGAGTTGCAAAGAATTACATCCTAGACGATCACGACACCATCCGCTTTC
TTGACACCCGAGGCAGGAAATTAATTGCCATTCCTCAAGCCATGATAGCT
GATATTCTAGCGCTAGTTCACGGCTTACACGGGCACGCAGGAGTAGGGGC
TACACTCACTCTTGTTCGCGACCGTTTCCAC
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