mRNA_P-littoralis_Contig825.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig825.2.1
Unique NamemRNA_P-littoralis_Contig825.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig825.2.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.320e-33
Identity = 68/135 (50.37%), Postives = 88/135 (65.19%), Query Frame = 1
Query:    1 DCRRKCLPTG-RMSWEYKGRTQAGVEVDWISEDQILKAKSFTPLQLDGFIALWHLYHPNITPSEEANHDPRAATALSRKAALQLYPIGTHVQKDFGSGLTLNGQVFDFKDRYWRVRYTDNNWEEVTRTELKRLLR 402
            DCRR    +G R  WEYKG++  GV  DW+ E+ +   +SFTPLQLD F+ALWHLY P +  +  A    +  T LSR  AL ++PIG   QK+   G+ L GQV+D+   YWRVRYTD NWEE++R EL+RL R
Sbjct: 1750 DCRRVQPASGMRTVWEYKGKSGNGVVSDWLPEETM--RRSFTPLQLDCFVALWHLYFPQLA-NASAPDSVKPRTPLSRAQALHVFPIGFTFQKELAGGILLQGQVYDYVSPYWRVRYTDGNWEELSRRELERLAR 1881          
BLAST of mRNA_P-littoralis_Contig825.2.1 vs. uniprot
Match: A0A6H5JMP6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP6_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.970e-33
Identity = 69/136 (50.74%), Postives = 90/136 (66.18%), Query Frame = 1
Query:    1 DCRRKCLPTGRMSWEYKGRTQAGVEVDWISEDQILKAKSFTPLQLDGFIALWHLYHPNITPSEEANHDP----RAATALSRKAALQLYPIGTHVQKDFGSGLTLNGQVFDFKDRYWRVRYTDNNWEEVTRTELKRL 396
            DCRR    T ++ WEY+G+  +G   DW+SED +L+  SFTPLQLDGF+ALWHLYHP     ++AN  P    +    LSR  AL+L+PI   ++K+   G+ L GQVFDF   YWRV Y+D NWEE+ R EL+RL
Sbjct:  746 DCRRSRSRT-QVVWEYRGKLGSGAVSDWLSEDVMLR--SFTPLQLDGFVALWHLYHP-----QQANDLPPVSVKPRAPLSRAEALKLFPIDFTLRKELDGGVNLQGQVFDFLQPYWRVGYSDQNWEELARRELERL 873          
BLAST of mRNA_P-littoralis_Contig825.2.1 vs. uniprot
Match: A0A6H5KNP4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP4_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.550e-19
Identity = 55/127 (43.31%), Postives = 74/127 (58.27%), Query Frame = 1
Query:   37 SWEYKGRTQAGVEVDWISEDQILKAKSFTPLQLDGFIALWHLYHPNITPSEEANHDPRAAT-----ALSRKAALQLYPIGTHVQK---DFGSGLTLN-GQVFDFKDRYWRVRYTDNNWEEVTRTELK 390
            +WEY+G+ Q G    W++ED +    SF+PLQLD F ALW  YH     S+ A   P A T       +R+AALQ +P+ T V K   D    + L+ G+V DF D YWRV ++D +WEE TR EL+
Sbjct: 1565 AWEYRGKYQDGTTSSWLTEDTV--KDSFSPLQLDVFHALWEDYHG----SDVAPRPPGAPTRGEREVATREAALQEFPLNTEVAKELRDKDDNIILSRGKVCDFYDPYWRVEFSDGDWEEFTRRELR 1685          
BLAST of mRNA_P-littoralis_Contig825.2.1 vs. uniprot
Match: A0A6H5K3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V4_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 4.100e-18
Identity = 48/123 (39.02%), Postives = 73/123 (59.35%), Query Frame = 1
Query:   37 SWEYKGRTQAGVEVDWISEDQILKAKSFTPLQLDGFIALWHLYH-PNITPSEEANHDPRAATALSRKAALQLYPIGTHVQKDF----GSGLTLNGQVFDFKDRYWRVRYTDNNWEEVTRTELK 390
            +WEYKG+ Q G   DW++ED +    SF+PLQL  F AL   YH  ++ P              +R+AAL+ +P+ T V ++     G+ +   G+V DF D YWRV+++D++WEE+TR EL+
Sbjct: 2110 AWEYKGKYQEGTPSDWLTEDTV--KDSFSPLQLGIFHALCEDYHGTDVAPRPPGALSRGEHEVATREAALKEFPLDTEVARELLDSDGNVVVSRGKVCDFYDPYWRVKFSDDDWEELTRRELR 2230          
BLAST of mRNA_P-littoralis_Contig825.2.1 vs. uniprot
Match: A0A6H5JAJ3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAJ3_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.350e-15
Identity = 46/122 (37.70%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   37 SWEYKGRTQAGVEVDWISEDQILKAKSFTPLQLDGFIALWHLYHPNITPSEEANHDPRAATAL-SRKAALQLYPIGTHVQKDF----GSGLTLNGQVFDFKDRYWRVRYTDNNWEEVTRTEL 387
            +WEY+   Q G    W +E+++    SF+PLQLD F AL+ L++        A    R    + SR+ ALQL+P+GT V ++F    G         FD  D YWRV Y D +WEE+T++E+
Sbjct: 1813 TWEYQDHYQDGALSPWPTEEEV--GDSFSPLQLDVFHALYELFYGENGAPRPAGPPTRGEREVASREQALQLFPVGTQVGREFADSDGHLKVFKATAFDCCDPYWRVEYPDGDWEELTKSEM 1932          
BLAST of mRNA_P-littoralis_Contig825.2.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.920e-11
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  223 LSRKAALQLYPIGTHVQKDFGSGLTLNGQVFDFKDRYWRVRYTDNNWEEVTRTELKRLL 399
            L R  ++Q+   G   QKDFG G  L GQVF  +DRYWRVRY++ NWEE+TR EL+R L
Sbjct: 1068 LQRGLSVQVKMQGFTSQKDFGGGQKLQGQVFGHRDRYWRVRYSNQNWEELTRQELERCL 1126          
BLAST of mRNA_P-littoralis_Contig825.2.1 vs. uniprot
Match: A0A836CCZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCZ7_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.480e-7
Identity = 29/79 (36.71%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  181 PSEEANHDPRAATALSRKAALQLYPIGTHVQKDF----GSGLT-LNGQVFDFKDRYWRVRYTDNNWEEVTRTELKRLLR 402
            P +     P+    + R++ALQLYPIGT + ++     G  +T + G V +F   YWR+RY D  WE++TRT++K  ++
Sbjct:   59 PRQRDRPTPKEDAGMRRESALQLYPIGTALVREHRTVVGGPITYVWGAVKNFVSPYWRIRYEDGEWEQMTRTQVKSAIQ 137          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig825.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KEH2_9PHAE1.320e-3350.37RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5JMP6_9PHAE2.970e-3350.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KNP4_9PHAE2.550e-1943.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3V4_9PHAE4.100e-1839.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAJ3_9PHAE1.350e-1537.70RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KBF4_9PHAE2.920e-1155.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CCZ7_9STRA2.480e-736.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig825contigP-littoralis_Contig825:5995..6648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps5262
PFAMsPHD_2,RGS
Model size654
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000162
EggNOG OGs2ENP4@1|root,2SS24@2759|Eukaryota,2XDYK@2836|Bacillariophyta
DescriptionPHD zinc finger
Cds size375
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791681.9935184-UTR-P-littoralis_Contig825:5994..62401680791681.9935184-UTR-P-littoralis_Contig825:5994..6240Pylaiella littoralis U1_48UTRP-littoralis_Contig825 5995..6240 -
1680791682.0181139-UTR-P-littoralis_Contig825:6615..66481680791682.0181139-UTR-P-littoralis_Contig825:6615..6648Pylaiella littoralis U1_48UTRP-littoralis_Contig825 6616..6648 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791682.005394-CDS-P-littoralis_Contig825:6240..66151680791682.005394-CDS-P-littoralis_Contig825:6240..6615Pylaiella littoralis U1_48CDSP-littoralis_Contig825 6241..6615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig825.2.1prot_P-littoralis_Contig825.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig825 6241..6615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig825.2.1

>prot_P-littoralis_Contig825.2.1 ID=prot_P-littoralis_Contig825.2.1|Name=mRNA_P-littoralis_Contig825.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp
MSWEYKGRTQAGVEVDWISEDQILKAKSFTPLQLDGFIALWHLYHPNITP
SEEANHDPRAATALSRKAALQLYPIGTHVQKDFGSGLTLNGQVFDFKDRY
WRVRYTDNNWEEVTRTELKRLLRA*
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mRNA from alignment at P-littoralis_Contig825:5995..6648-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig825.2.1 ID=mRNA_P-littoralis_Contig825.2.1|Name=mRNA_P-littoralis_Contig825.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=654bp|location=Sequence derived from alignment at P-littoralis_Contig825:5995..6648- (Pylaiella littoralis U1_48)
GACTGCCGCAGAAAATGTCTACCGACAGGCCGAATGAGTTGGGAATACAA AGGTCGCACTCAAGCAGGAGTAGAGGTGGACTGGATATCGGAGGATCAGA TTTTGAAGGCTAAATCGTTCACACCGCTCCAGTTAGATGGTTTCATAGCT CTTTGGCATCTGTACCACCCCAATATCACCCCCTCGGAAGAGGCGAACCA TGATCCCCGCGCCGCTACTGCCCTCTCTCGCAAAGCCGCCTTGCAATTGT ATCCTATAGGTACCCACGTGCAGAAGGATTTCGGTTCTGGTCTAACCCTG AACGGACAGGTGTTCGACTTTAAAGATCGATACTGGAGGGTGCGCTACAC GGACAACAACTGGGAGGAAGTCACCCGCACCGAACTCAAGCGTTTACTGC GGGCTTGATAGACTTAGGGTTTTGTTCGCGGAGGTCACGGGAAATGGCGT AGGATTTTTGGTTTTCTTATTTTCTGCCTGCTTTTGGTTCATCTATGCAG CGTCAAGCGTTGTTGGAATTCGTATATCGTTCCTTGGTTCAGTAAGATAC ACGAAGGATGCTTGACGCCTGTCGTAGCAATAGTAAATGATGGTTTCGCC GGCATAGAGTTGCGAACCGTCGTACGTCCTTTCTCTTGTCTTTCTTATCT CTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig825:5995..6648-

>mRNA_P-littoralis_Contig825.2.1 ID=mRNA_P-littoralis_Contig825.2.1|Name=mRNA_P-littoralis_Contig825.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig825:5995..6648- (Pylaiella littoralis U1_48)
ATGAGTTGGGAATACAAAGGTCGCACTCAAGCAGGAGTAGAGGTGGACTG
GATATCGGAGGATCAGATTTTGAAGGCTAAATCGTTCACACCGCTCCAGT
TAGATGGTTTCATAGCTCTTTGGCATCTGTACCACCCCAATATCACCCCC
TCGGAAGAGGCGAACCATGATCCCCGCGCCGCTACTGCCCTCTCTCGCAA
AGCCGCCTTGCAATTGTATCCTATAGGTACCCACGTGCAGAAGGATTTCG
GTTCTGGTCTAACCCTGAACGGACAGGTGTTCGACTTTAAAGATCGATAC
TGGAGGGTGCGCTACACGGACAACAACTGGGAGGAAGTCACCCGCACCGA
ACTCAAGCGTTTACTGCGGGCTTGA
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