mRNA_P-littoralis_Contig825.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig825.42.1
Unique NamemRNA_P-littoralis_Contig825.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig825.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig825contigP-littoralis_Contig825:104996..105528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size535
Hectar predicted targeting categorysignal anchor
Exons1
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791681.9429247-UTR-P-littoralis_Contig825:104995..1051561680791681.9429247-UTR-P-littoralis_Contig825:104995..105156Pylaiella littoralis U1_48UTRP-littoralis_Contig825 104996..105156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791681.959935-CDS-P-littoralis_Contig825:105156..1055281680791681.959935-CDS-P-littoralis_Contig825:105156..105528Pylaiella littoralis U1_48CDSP-littoralis_Contig825 105157..105528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig825.42.1prot_P-littoralis_Contig825.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig825 105157..105528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig825.42.1

>prot_P-littoralis_Contig825.42.1 ID=prot_P-littoralis_Contig825.42.1|Name=mRNA_P-littoralis_Contig825.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=124bp
MRTCAPYFYWSSPRRYDFCTCWLPLYTLTFSWFVMSHIVRMRGMVEMFVL
CSSHGHEILVRQMNSPIVPCPQLIHTFSLLTRLCCVVLCCVGVLLLAAML
LGDANSFSRYRRPNSAGVETNPQP
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mRNA from alignment at P-littoralis_Contig825:104996..105528+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig825.42.1 ID=mRNA_P-littoralis_Contig825.42.1|Name=mRNA_P-littoralis_Contig825.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=533bp|location=Sequence derived from alignment at P-littoralis_Contig825:104996..105528+ (Pylaiella littoralis U1_48)
CGTTAGTTGGAATTATGTAATTACTGCAATATGTACTGCTATATTGCAAG
ATGGTTGGACCACCGCCGGTGTCATGACACGGTGCCCGTAGTTGTGCTGT
AGCCCCTGCCTGGCGAGGCAGCGACAATCGGAACGTTTGCCAACCAAACG
TGAAGCCAGCGATGCGTACCTGCGCTCCTTACTTTTATTGGTCCTCCCCT
AGGCGCTACGATTTTTGCACCTGTTGGTTGCCTCTCTACACCCTGACTTT
CTCTTGGTTTGTGATGTCCCATATCGTTAGGATGCGTGGAATGGTCGAGA
TGTTCGTTTTGTGTTCGTCCCATGGCCACGAAATACTTGTACGACAAATG
AACTCGCCCATCGTGCCATGCCCGCAGCTCATACATACATTTTCATTGTT
GACGCGGTTGTGCTGTGTTGTGTTGTGTTGTGTTGGTGTGCTATTGTTGG
CAGCAATGTTACTCGGTGACGCAAATTCCTTTTCTCGCTATCGACGACCA
AACAGTGCTGGTGTGGAGACGAATCCTCAGCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig825:104996..105528+

>mRNA_P-littoralis_Contig825.42.1 ID=mRNA_P-littoralis_Contig825.42.1|Name=mRNA_P-littoralis_Contig825.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=372bp|location=Sequence derived from alignment at P-littoralis_Contig825:104996..105528+ (Pylaiella littoralis U1_48)
ATGCGTACCTGCGCTCCTTACTTTTATTGGTCCTCCCCTAGGCGCTACGA
TTTTTGCACCTGTTGGTTGCCTCTCTACACCCTGACTTTCTCTTGGTTTG
TGATGTCCCATATCGTTAGGATGCGTGGAATGGTCGAGATGTTCGTTTTG
TGTTCGTCCCATGGCCACGAAATACTTGTACGACAAATGAACTCGCCCAT
CGTGCCATGCCCGCAGCTCATACATACATTTTCATTGTTGACGCGGTTGT
GCTGTGTTGTGTTGTGTTGTGTTGGTGTGCTATTGTTGGCAGCAATGTTA
CTCGGTGACGCAAATTCCTTTTCTCGCTATCGACGACCAAACAGTGCTGG
TGTGGAGACGAATCCTCAGCCG
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