mRNA_P-littoralis_Contig825.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig825.13.1
Unique NamemRNA_P-littoralis_Contig825.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig825.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig825contigP-littoralis_Contig825:58041..58971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size311
Hectar predicted targeting categoryother localisation
Exons2
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791681.8078003-CDS-P-littoralis_Contig825:58040..581271680791681.8078003-CDS-P-littoralis_Contig825:58040..58127Pylaiella littoralis U1_48CDSP-littoralis_Contig825 58041..58127 -
1680791681.81835-CDS-P-littoralis_Contig825:58747..589001680791681.81835-CDS-P-littoralis_Contig825:58747..58900Pylaiella littoralis U1_48CDSP-littoralis_Contig825 58748..58900 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791681.8329608-UTR-P-littoralis_Contig825:58900..589711680791681.8329608-UTR-P-littoralis_Contig825:58900..58971Pylaiella littoralis U1_48UTRP-littoralis_Contig825 58901..58971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig825.13.1prot_P-littoralis_Contig825.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig825 58041..58900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig825.13.1

>prot_P-littoralis_Contig825.13.1 ID=prot_P-littoralis_Contig825.13.1|Name=mRNA_P-littoralis_Contig825.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=80bp
MAQQMAISVLPQCFGGCQWYITTGGLGRSRQHLLGPGQLTWKGNLVSGQQ
RSRSHYLPVSYLPDFVEDYNKNDTSKEKQ*
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mRNA from alignment at P-littoralis_Contig825:58041..58971-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig825.13.1 ID=mRNA_P-littoralis_Contig825.13.1|Name=mRNA_P-littoralis_Contig825.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=931bp|location=Sequence derived from alignment at P-littoralis_Contig825:58041..58971- (Pylaiella littoralis U1_48)
ACTGTACACGTAAATAAAGTTGATGTTACGTAAACTAGCAAAGAAGCGAC
AGATCGTAAGGAGAGCGAGAGATGGCACAACAAATGGCAATCTCTGTTCT
ACCTCAATGTTTTGGTGGATGTCAGTGGTATATTACCACTGGGGGTCTCG
GTAGATCGAGACAGCATTTGTTGGGCCCCGGCCAGTTGACATGGAAGGGA
AACTTGGTTTCTGGACAACAGAGGGCGGCGACCGGTGTCGCGCTCTCATT
ATTTGCCAGTGAGTTACCTTCCAGACTTTGTAGAAGATTATAATAAAAAT
GACACTTCGAAGGAAAACAATAAAGCGGGTATTTCGTACGGCTCCAACCA
AGGGGGAAGAGAACGAAATTACAGTTTATTGGTTTACGGAGATGTCAAAA
TAATTATATATCTGCAAGAAGAGGAGCTGAGCTACCTGTCAGCGGTCGCA
CACAAGCTCAGTCCAAAGTCTAACGCTCTCACAAACTTGTGGGCTTGTGA
GCGAACAACACTGCTACCGCTACCTGTCGATCAGCCTTGCTTCGGGACCT
AGTAGTGGTGTCGTTTTTCCCACCCACCCCACCCTTTTTTTTCTTCGAAA
GTGGGAGGGGGGGGATTAGCGGCATCTAGGGGGATGTACCTGGAAGGGTA
TTTTTATTTAAACGGTGAATATTTTATTGTGATAATTTTACAAAGGACTG
GTTTAAGCGGGGGCTTGATGGTTGGATGTCAGTGGTATATTACCACTGGG
GGTCTCGGTAGATCGAGACAGCATTTGTTGGGCCCCGGCCAGTTGACATG
GAAGGGAAACTTGGTTTCTGGACAACAGAGGGCGGCGACCGGTGTCGCGC
TCTCATTATTTGCCAGTGAGTTACCTTCCAGACTTTGTAGAAGATTATAA
TAAAAATGACACTTCGAAGGAAAAACAATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig825:58041..58971-

>mRNA_P-littoralis_Contig825.13.1 ID=mRNA_P-littoralis_Contig825.13.1|Name=mRNA_P-littoralis_Contig825.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=240bp|location=Sequence derived from alignment at P-littoralis_Contig825:58041..58971- (Pylaiella littoralis U1_48)
ATGGCACAACAAATGGCAATCTCTGTTCTACCTCAATGTTTTGGTGGATG
TCAGTGGTATATTACCACTGGGGGTCTCGGTAGATCGAGACAGCATTTGT
TGGGCCCCGGCCAGTTGACATGGAAGGGAAACTTGGTTTCTGGACAACAG
AGGTCGCGCTCTCATTATTTGCCAGTGAGTTACCTTCCAGACTTTGTAGA
AGATTATAATAAAAATGACACTTCGAAGGAAAAACAATAA
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