mRNA_P-littoralis_Contig825.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig825.12.1
Unique NamemRNA_P-littoralis_Contig825.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig825.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig825contigP-littoralis_Contig825:47548..48501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size474
Hectar predicted targeting categoryother localisation
Exons2
Cds size471
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791681.7614808-CDS-P-littoralis_Contig825:47547..479921680791681.7614808-CDS-P-littoralis_Contig825:47547..47992Pylaiella littoralis U1_48CDSP-littoralis_Contig825 47548..47992 +
1680791681.7739224-CDS-P-littoralis_Contig825:48473..484991680791681.7739224-CDS-P-littoralis_Contig825:48473..48499Pylaiella littoralis U1_48CDSP-littoralis_Contig825 48474..48499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig825.12.1prot_P-littoralis_Contig825.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig825 47548..48499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig825.12.1

>prot_P-littoralis_Contig825.12.1 ID=prot_P-littoralis_Contig825.12.1|Name=mRNA_P-littoralis_Contig825.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=157bp
LRNRLGVWDNGGDPKAPTLGSSHHRRRRPARARTPRHIRRRSGATARPPT
AVHLPLPAGTKRQRRLRLLAPKSRHPGNVKAATPQVTSTATYLQAGTLAR
GVVATTVGRAAMVIPARSPTPYGAITPAARTAAASRAPTRAPALLDPTGP
AAARRRD
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mRNA from alignment at P-littoralis_Contig825:47548..48501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig825.12.1 ID=mRNA_P-littoralis_Contig825.12.1|Name=mRNA_P-littoralis_Contig825.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=954bp|location=Sequence derived from alignment at P-littoralis_Contig825:47548..48501+ (Pylaiella littoralis U1_48)
CTTCGCAATCGCCTCGGGGTCTGGGACAACGGGGGAGATCCAAAGGCTCC
CACACTCGGAAGCAGCCACCATCGTCGACGTCGTCCGGCTCGCGCTCGCA
CACCGCGTCACATCCGCCGTCGAAGCGGAGCAACCGCACGGCCTCCAACG
GCAGTGCATCTTCCTCTTCCGGCCGGAACAAAAAGGCAGCGAAGGCTTCG
GCTTCTAGCTCCAAAAAGCCGGCACCCCGGAAACGTGAAGGCCGCGACGC
CGCAAGTGACGAGCACAGCGACGTACCTTCAGGCGGGCACGCTCGCTCGA
GGCGTAGTCGCCACCACCGTGGGTCGGGCAGCGATGGTGATTCCAGCGAG
AAGTCCAACACCATACGGAGCTATCACTCCGGCAGCGAGGACGGCGGCAG
CGTCTCGAGCTCCCACACGAGCGCCAGCTCTACTAGACCCGACAGGCAAG
TGACTCCTTCGCTAGACACAGTTGCCTCCGGCAACCACGTTGCACTTGCC
CGCAACGGTGCCATGGTAGTCTACGACGGCGCGCAAAATGATAGGCCTCT
CTCTTCGCGTGGGGCAAGAGATCGCCAACAGGACATTGACGCTGACAATT
TTAAACAGCAAGAGAAGCACCACATTTCGGTAACTCGTAAATACCCAAGG
ACCGAGTTTAGAAATGTCGAGCAGATTCACCCCCAGCTGCCTTTCCCTGC
TTCTGTGAGCGCTAACAGTAATGCATTGGGACAATTTTTGGATACTACCA
AAAAGGCAATGGCGGATATTCTCAGCCAAGCTGACCCTTTGCTTCTCTTC
GAGAATTCTTCTGGGTGGGTTCGGGGTTGGGAAAGACCCATCCAGAAGTG
CATCACCAAAACCATCCCGCCGCGAACTGATGAAACAGCAAATTTGACCT
CTGTTGTCACCACCCTGTTCGACCAGGTCCGGCAGCGGCTCGACGAAGGG
ATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig825:47548..48501+

>mRNA_P-littoralis_Contig825.12.1 ID=mRNA_P-littoralis_Contig825.12.1|Name=mRNA_P-littoralis_Contig825.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=471bp|location=Sequence derived from alignment at P-littoralis_Contig825:47548..48501+ (Pylaiella littoralis U1_48)
CTTCGCAATCGCCTCGGGGTCTGGGACAACGGGGGAGATCCAAAGGCTCC
CACACTCGGAAGCAGCCACCATCGTCGACGTCGTCCGGCTCGCGCTCGCA
CACCGCGTCACATCCGCCGTCGAAGCGGAGCAACCGCACGGCCTCCAACG
GCAGTGCATCTTCCTCTTCCGGCCGGAACAAAAAGGCAGCGAAGGCTTCG
GCTTCTAGCTCCAAAAAGCCGGCACCCCGGAAACGTGAAGGCCGCGACGC
CGCAAGTGACGAGCACAGCGACGTACCTTCAGGCGGGCACGCTCGCTCGA
GGCGTAGTCGCCACCACCGTGGGTCGGGCAGCGATGGTGATTCCAGCGAG
AAGTCCAACACCATACGGAGCTATCACTCCGGCAGCGAGGACGGCGGCAG
CGTCTCGAGCTCCCACACGAGCGCCAGCTCTACTAGACCCGACAGGTCCG
GCAGCGGCTCGACGAAGGGAT
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