mRNA_P-littoralis_Contig824.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig824.13.1
Unique NamemRNA_P-littoralis_Contig824.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig824.13.1 vs. uniprot
Match: A0A6H5J952_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J952_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 3.520e-25
Identity = 48/81 (59.26%), Postives = 55/81 (67.90%), Query Frame = 2
Query:   68 LLAEIFPPEGGGNGEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYRFAGANIPSHQAATTTDGLQD 310
             L   F  + G  GEE MRKYFA WSPYR+R+VHVE IGK E+YRP S L G +GTR MY FAGAN P    +TTT+G  D
Sbjct:  201 FLRSFFREKAGSEGEEGMRKYFAKWSPYRMRRVHVEFIGKKEMYRPNSVLAGTEGTRDMYHFAGANTPKWDGSTTTEGRVD 281          
BLAST of mRNA_P-littoralis_Contig824.13.1 vs. uniprot
Match: A0A6H5JQG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG9_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 4.150e-25
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 2
Query:   68 LLAEIFPPEGGGNGEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYRFAGANIPSHQAATTTDGLQD 310
             L   F  + G  GEE MR+YFA WSPYR+R+VHVE IGK E+YRP S L+G++GTR MY FAGAN P    +T+T G +D
Sbjct:  217 FLRSFFREKAGSEGEEGMRRYFAKWSPYRMRRVHVEIIGKKEVYRPNSILEGVEGTREMYHFAGANTPKWDGSTSTKGRED 297          
BLAST of mRNA_P-littoralis_Contig824.13.1 vs. uniprot
Match: A0A6H5JFY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFY7_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 4.260e-25
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 2
Query:   68 LLAEIFPPEGGGNGEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYRFAGANIPSHQAATTTDGLQD 310
             L   F  + G  GEE MR+YFA WSPY +R+VHVE IGK EIYRP S L+G++GTR MY FAGAN P    +T+T G +D
Sbjct:  143 FLRSFFREKAGSEGEEGMRRYFAKWSPYPMRRVHVEFIGKKEIYRPNSILEGVEGTREMYHFAGANTPEWDGSTSTKGRED 223          
BLAST of mRNA_P-littoralis_Contig824.13.1 vs. uniprot
Match: A0A6H5KI10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI10_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 5.160e-25
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = 2
Query:   68 LLAEIFPPEGGGNGEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYRFAGANIPSHQAATTTDGLQ 307
             L   F  + G  GEE MR+YFA WSPYR+R+VH E IGK EIYRP S L+G++GTR MY FAGAN P    +TTT+GL+
Sbjct:  695 FLRSFFEEKAGSEGEEGMRRYFAKWSPYRMRRVHFEFIGKKEIYRPNSILEGVEGTREMYHFAGANTPKWDGSTTTEGLE 774          
BLAST of mRNA_P-littoralis_Contig824.13.1 vs. uniprot
Match: A0A6H5L2L6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L6_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 9.400e-25
Identity = 52/86 (60.47%), Postives = 60/86 (69.77%), Query Frame = 2
Query:   68 LLAEIFPPEGGGNGEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYRFAGANIPSHQAATTTDGLQ-DIELV 322
             L   F  + G  G E MRKYFA WSPYR+R+VHVE IGK EIYRP S L GI+GTR MY FAGAN P    +TTT+GL+ D +LV
Sbjct:  489 FLRSFFREKAGSEGGEGMRKYFAKWSPYRMRRVHVECIGKKEIYRPNSVLAGIEGTRDMYHFAGANTPKWDGSTTTEGLENDCKLV 574          
BLAST of mRNA_P-littoralis_Contig824.13.1 vs. uniprot
Match: A0A6H5L293_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L293_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 8.320e-24
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 2
Query:   68 LLAEIFPPEGGGNGEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYRFAGANIPSHQAATTTDGLQD 310
             L   F  + G  GEE MR+YFA WSPYR+R+VHVE I K EIYRP S L+G++GTR MY FAGAN P    +T+T G +D
Sbjct:  523 FLRSFFREKAGSEGEEGMRRYFAKWSPYRMRRVHVEFISKKEIYRPNSILEGVEGTREMYHFAGANTPKWDGSTSTKGRED 603          
BLAST of mRNA_P-littoralis_Contig824.13.1 vs. uniprot
Match: A0A6H5JLE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE6_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.800e-22
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 2
Query:   80 IFPPEGGGNGEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYRFAGANIPSHQAATTTDGLQD 310
             F  + G  GEE MRKYFA WSPYR+R+VHVE IG  EI RP S L G++GT  MY FAGAN P    +TTT+GL+D
Sbjct:  232 FFREKAGSEGEEGMRKYFAKWSPYRMRRVHVEFIGNKEISRPNSVLAGLEGTLDMYHFAGANNPKWDGSTTTEGLED 308          
BLAST of mRNA_P-littoralis_Contig824.13.1 vs. uniprot
Match: A0A6H5L7F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F4_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 3.330e-22
Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 2
Query:   68 LLAEIFPPEGGGNGEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYRFAGANIPSHQAATTTDGLQD 310
             L   F  + G  GEE MR++FA WSPYR+R+VHVE +GK EIYRP S L+G++GTR MY  AG N P    +T+T G  D
Sbjct:  249 FLRSFFREKAGSEGEEGMRRFFARWSPYRMRRVHVEFMGKKEIYRPNSILEGVEGTREMYHLAGPNTPEWDGSTSTKGRGD 329          
BLAST of mRNA_P-littoralis_Contig824.13.1 vs. uniprot
Match: A0A6H5JBS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS1_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 6.960e-22
Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 2
Query:   68 LLAEIFPPEGGGNGEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYRFAGANIPSHQAATTTDGLQD 310
             L   F  + G  GEE MRKYFA W+PYR+R+VHVE  G  EIYR  S L GI+GTR M  FAGAN P    +TTT+G +D
Sbjct:  165 FLRSFFREKAGSEGEEGMRKYFAKWAPYRMRRVHVEFFGMKEIYRTNSVLAGIEGTRDMCHFAGANTPKWDGSTTTEGRED 245          
BLAST of mRNA_P-littoralis_Contig824.13.1 vs. uniprot
Match: A0A6H5KTJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ4_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.140e-21
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 2
Query:  107 GEEDMRKYFASWSPYRIRKVHVEHIGKNEIYRPGSELDGIDGTRVMYRFAGANIPSHQAATTTDGLQD 310
            GEE  RKYFA WSPYR+R+VHVE IGK EIYRP S L+G++GTR MY  AGAN P    +T+T G +D
Sbjct:  310 GEESTRKYFAKWSPYRMRRVHVEFIGKKEIYRPNSILEGVEGTREMYHCAGANTPKRDGSTSTKGRED 377          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig824.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5J952_9PHAE3.520e-2559.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQG9_9PHAE4.150e-2556.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFY7_9PHAE4.260e-2556.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI10_9PHAE5.160e-2558.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2L6_9PHAE9.400e-2560.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L293_9PHAE8.320e-2456.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLE6_9PHAE1.800e-2259.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F4_9PHAE3.330e-2253.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBS1_9PHAE6.960e-2255.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTJ4_9PHAE1.140e-2163.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig824contigP-littoralis_Contig824:62954..63276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size323
Hectar predicted targeting categoryother localisation
Exons1
Cds size216
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791681.4890347-UTR-P-littoralis_Contig824:62953..629641680791681.4890347-UTR-P-littoralis_Contig824:62953..62964Pylaiella littoralis U1_48UTRP-littoralis_Contig824 62954..62964 +
1680791681.5163922-UTR-P-littoralis_Contig824:63180..632761680791681.5163922-UTR-P-littoralis_Contig824:63180..63276Pylaiella littoralis U1_48UTRP-littoralis_Contig824 63181..63276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791681.503874-CDS-P-littoralis_Contig824:62964..631801680791681.503874-CDS-P-littoralis_Contig824:62964..63180Pylaiella littoralis U1_48CDSP-littoralis_Contig824 62965..63180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig824.13.1prot_P-littoralis_Contig824.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig824 62965..63180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig824.13.1

>prot_P-littoralis_Contig824.13.1 ID=prot_P-littoralis_Contig824.13.1|Name=mRNA_P-littoralis_Contig824.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp
MKNHERFGKRIVGANKVVDFLRKFFPQKGGATVKRTCGSTSRHGLRTASA
RCTWSISARTRSTGPARSWTV*
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mRNA from alignment at P-littoralis_Contig824:62954..63276+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig824.13.1 ID=mRNA_P-littoralis_Contig824.13.1|Name=mRNA_P-littoralis_Contig824.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=323bp|location=Sequence derived from alignment at P-littoralis_Contig824:62954..63276+ (Pylaiella littoralis U1_48)
CAAATAATGCCATGAAGAACCATGAGCGGTTTGGCAAGCGCATCGTGGGG GCGAACAAGGTGGTGGACTTCTTGCGGAAATTTTTCCCCCAGAAGGGGGG GGCAACGGTGAAGAGGACATGCGGAAGTACTTCGCGTCATGGTCTCCGTA CCGCATCCGCAAGGTGCACGTGGAGCATATCGGCAAGAACGAGATCTACC GGCCCGGCTCGGAGCTGGACGGTATAGACGGAACGCGTGTGATGTACCGT TTTGCGGGAGCGAACATTCCGAGCCACCAAGCGGCTACCACAACGGACGG ACTGCAAGACATCGAGCTAGTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig824:62954..63276+

>mRNA_P-littoralis_Contig824.13.1 ID=mRNA_P-littoralis_Contig824.13.1|Name=mRNA_P-littoralis_Contig824.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig824:62954..63276+ (Pylaiella littoralis U1_48)
ATGAAGAACCATGAGCGGTTTGGCAAGCGCATCGTGGGGGCGAACAAGGT
GGTGGACTTCTTGCGGAAATTTTTCCCCCAGAAGGGGGGGGCAACGGTGA
AGAGGACATGCGGAAGTACTTCGCGTCATGGTCTCCGTACCGCATCCGCA
AGGTGCACGTGGAGCATATCGGCAAGAACGAGATCTACCGGCCCGGCTCG
GAGCTGGACGGTATAG
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