mRNA_P-littoralis_Contig824.8.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig824.8.2 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 349 bits (896), Expect = 8.700e-109 Identity = 172/246 (69.92%), Postives = 199/246 (80.89%), Query Frame = 2
Query: 293 VAHACSFLVLGGAANALKVVTPSSPVTVVSDRTFTVEWTGADASSRFEIDLYYCGSMCTENSCGEWVTALCPYGENGCPDNEGDYDVVMPEPLSGISGSGYKVRVADAMDKSDADCSDDFYMLASEEAPDVGDDPGPYLIVTSPAEEGFAGAGEMYTVKFDYDNGVGSRVDRFKIDLFSPGGQGNGDCGTWVVNLCDKESIGCKDSMGDYDVLIPTNVPNGDYSIRVGRFEDDTLYGCSATFAIVG 1030
VA AC+ L GAANAL+VVTPS+ + VV+DRT+TVEWTGAD S RFEIDLY+CGSMC E+SCG+WVTALCPYGE GCPDNEGDYD+VMPEP+SG S SGYKVRV D D+ DCSD FY++ASE+APD G + G +L VTSPAE A AGE YTV+FDYDNGVGS+VDRF IDL+ G+GDCGT+V ++CDK SIGCKDSMGDYDV IP + GDY IRVGRFED+ LYGCS TF I+G
Sbjct: 7 VALACAML---GAANALEVVTPSADLIVVADRTYTVEWTGAD-SGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMA--DGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMG 246
BLAST of mRNA_P-littoralis_Contig824.8.2 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 338 bits (868), Expect = 1.440e-104 Identity = 166/244 (68.03%), Postives = 191/244 (78.28%), Query Frame = 2
Query: 293 VAHACSFLVLGGAANALKVVTPSSPVTVVSDRTFTVEWTGADASSRFEIDLYYCGSMCTENSCGEWVTALCPYGENGCPDNEGDYDVVMPEPLSGISGSGYKVRVADAMDKSDADCSDDFYMLASEEAPDVGDDPGPYLIVTSPAEEGFAGAGEMYTVKFDYDNGVGSRVDRFKIDLFSPGGQGNGDCGTWVVNLCDKESIGCKDSMGDYDVLIPTNVPNGDYSIRVGRFEDDTLYGCSATFAI 1024
VA AC L GAANALKV TPS +TV++DRT+TVEWTG + +RFEIDLYYCGSMC E+ CG+WVTALCPYGE+GCPDNEGDYD+VMPEP+ G SGSGYKVRV D D+ DADCSD+FY+LAS EAP VGD+ GP L VTSPA A YTV+FDYDNGVGS VDRF IDL+ G+G DCGT+V ++CDK +IGCKDSMGDYDV IP + G+Y IRV RFEDD+LY CS TF I
Sbjct: 7 VALACGML---GAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEG--DCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI 245
BLAST of mRNA_P-littoralis_Contig824.8.2 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 324 bits (831), Expect = 4.110e-99 Identity = 154/236 (65.25%), Postives = 186/236 (78.81%), Query Frame = 2
Query: 326 GAANALKVVTPSSPVTVVSDRTFTVEWTGADASSRFEIDLYYCGSMCTENSCGEWVTALCPYGENGCPDNEGDYDVVMPEPLSGISGSGYKVRVADAMDKSDADCSDDFYMLASEEAPDVGDDPGPYLIVTSPAEEGFAGAGEMYTVKFDYDNGVGSRVDRFKIDLFSPGGQGNGDCGTWVVNLCDKESIGCKDSMGDYDVLIPTNVPNGDYSIRVGRFEDDTLYGCSATFAIVGS 1033
GAA+AL+VVTP+ VV+ R +TVEWTG +++R+EIDLYYCGSMC E+ CG+WVTALCPYGE+GCPDNEGDYD+VMPEP+SG SGSGYKVRVAD D DCSD+FY++A EAP GD GPY+ VTSP+ A AGE YTV+FDYDNG+GS V RF IDL+S G+GDCGT++ LCDK +IGCKDSMGDYDV IP + G Y+IRVG FEDD++YGCS F I+G+
Sbjct: 3 GAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSA--TGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGA 236
BLAST of mRNA_P-littoralis_Contig824.8.2 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 318 bits (816), Expect = 3.280e-97 Identity = 155/247 (62.75%), Postives = 190/247 (76.92%), Query Frame = 2
Query: 293 VAHACSFLVLGGAANALKVVTPSSPVTVVSDRTFTVEWTGADASSRFEIDLYYCGSMCTENSCGEWVTALCPYGENGCPDNEGDYDVVMPEPLSGISGSGYKVRVADAMDKSDADCSDDFYMLASEEAPDVGDDPGPYLIVTSPAEEGFAGAGEMYTVKFDYDNGVGSRVDRFKIDLFSPGGQGNGDCGTWVVNLCDKESIGCKDSMGDYDVLIPTNVPNGDYSIRVGRFEDDTLYGCSATFAIVGS 1033
VA AC L G A+AL+VVTP++ VVS R +TVEW+G ++ RFEIDLYYC SMC E+ CGEWVTALCPYGE+GCPDNEGDYD+VMPEP+SG SGSGYKVRVAD D+ +DCSD+FY++A +AP D GPY+ VTSP+ A AGE YTV+FDYDNG+GS V RF IDL++ G+GDCGT++ LCDK +IGCKDSMGDYDV IP + G Y+IRVG FED+++YGCS F I+G+
Sbjct: 8 VALACGML---GVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAA--TGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGA 249
BLAST of mRNA_P-littoralis_Contig824.8.2 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 301 bits (771), Expect = 7.340e-91 Identity = 150/235 (63.83%), Postives = 184/235 (78.30%), Query Frame = 2
Query: 326 GAANALKVVTPSSPVTVVSDRTFTVEWTGADASSRFEIDLYYCGSMCTENSCGEWVTALCPYGENGCPDNEGDYDVVMPEPLSGISGSGYKVRVADAMDKSDADCSDDFYMLASEEAPDVGDDPGPYLIVTSPAEEGFAGAGEMYTVKFDYDNGVGSRVDRFKIDLFSPGGQGNGDCGTWVVNLCDKESIGCKDSMGDYDVLIPTNVPNGDYSIRVGRFEDDTLYGCSATFAIVG 1030
GAANAL+VV+P++ VV+D +TVEWTGA S R++IDLYYCGS+C E+ CG+WVTALCPYG++GCPD +GDYDVVMPEP+ G S SGYKV V D+ D+SD CS DF ++AS EAPD D G Y+ VTSP++ A AG YTV+FDYDNG+GS V+RF IDL+S GG +GDCGT+V +CDK SIGCKDS GDYDV+IP+ +G YSIRVG FEDD +YGCS +F IVG
Sbjct: 15 GAANALEVVSPAAGDMVVADSAYTVEWTGA-TSGRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATD-MGAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGG--SGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVG 244
BLAST of mRNA_P-littoralis_Contig824.8.2 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 291 bits (744), Expect = 3.760e-87 Identity = 149/237 (62.87%), Postives = 176/237 (74.26%), Query Frame = 2
Query: 293 VAHACSFLVLGGAANALKVVTPSSPVTVVSDRTFTVEWTGADASSRFEIDLYYCGSMCTENSCGEWVTALCPYGENGCPDNEGDYDVVMPEPLSGISGSGYKVRVADAMDKSDADCSDDFYMLASEEAPDVGDDPGPYLIVTSPAEEGFAGAGEMYTVKFDYDNGVGSRVDRFKIDLFSPGGQGNGDCGTWVVNLCDKESIGCKDS----MGDYDVLIPTNVPNGDYSIRVGRFEDD 991
VA AC L GAANALKV TPS +TV++DRT+TVEWTG + +RFEIDLYYCGSMC E+ CG+WVTALCPYGE+GCPDNEGDYD+VMPEP+SG SGSGYKVRV D D+ DADCSD+FY++AS EAP VGD+ GP L VTSPA A YTV+FDYDNGVGSRVDRF IDL+ G+GDCGT+V ++CDK +IGCKDS G + V G +S+ V R+ D
Sbjct: 8 VALACGML---GAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRA--DGDGDCGTYVQSICDKPTIGCKDSNPVRRGRWRVQDSGGPLRGRFSLLVLRYLHD 239
BLAST of mRNA_P-littoralis_Contig824.8.2 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 286 bits (732), Expect = 2.740e-85 Identity = 142/234 (60.68%), Postives = 179/234 (76.50%), Query Frame = 2
Query: 326 GAANALKVVTPSSPVTVVSDRTFTVEWTGADASSRFEIDLYYCGSMCTENSCGEWVTALCPYGENGCPDNEGDYDVVMPEPLSGISGSGYKVRVADAMDKSDADCSDDFYMLASEEAPDVGDDPGPYLIVTSPAEEGFAGAGEMYTVKFDYDNGVGSRVDRFKIDLFSPGGQGNGDCGTWVVNLCDKESIGCKDSMGDYDVLIPTNVPNGDYSIRVGRFEDDTLYGCSATFAIV 1027
GAANAL+VV+P++ ++V++DRT+TVEWTG + SRFEIDLYYCGS C E+ CG+WVTALCPYG +GCPD +GDYD+VMPEP++G S SGYKV V D+ D+S CS DF ++AS +AP G+ G L VTSP++ A AG +YTV++DY+NG+GS DRF IDL+S G G GDCGT+V LCDK SIGC DS GDYDV IP++ P G YS+RVG F DD ++ CS F IV
Sbjct: 15 GAANALEVVSPAAGISVIADRTYTVEWTGT-SDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGE-VGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYG-TGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIV 244
BLAST of mRNA_P-littoralis_Contig824.8.2 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE) HSP 1 Score: 292 bits (747), Expect = 3.720e-84 Identity = 142/191 (74.35%), Postives = 155/191 (81.15%), Query Frame = 2
Query: 470 ENSCGEWVTALCPYGENGCPDNEGDYDVVMPEPLSGISGSGYKVRVADAMDKSDADCSDDFYMLASEEAPDVGDDPGPYLIVTSPAEEGFAGAGEMYTVKFDYDNGVGSRVDRFKIDLFSPGGQGNGDCGTWVVNLCDKESIGCKDSMGDYDVLIPTNVPNGDYSIRVGRFEDDTLYGCSATFAIVGSSVG 1042
E+ CGEWVTALCPYG GCPDNEGDYD+VMPEP+SG SGSGYKVRVAD DADCSD+FY++AS EAP VG PYL+VTSP+ A AG YTV+FDYDNGVGSRVDRFKIDL+S GG GDCGTWV+NLCDKE+IGCKDSMGDYDV IP V +G YSIRVGRFEDD LYGCS F IVGSS G
Sbjct: 13 EDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGG--TGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVGSSSG 201
BLAST of mRNA_P-littoralis_Contig824.8.2 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 283 bits (723), Expect = 5.140e-84 Identity = 138/232 (59.48%), Postives = 177/232 (76.29%), Query Frame = 2
Query: 329 AANALKVVTPSSPVTVVSDRTFTVEWTGADASSRFEIDLYYCGSMCTENSCGEWVTALCPYGENGCPDNEGDYDVVMPEPLSGISGSGYKVRVADAMDKSDADCSDDFYMLASEEAPDVGDDPGPYLIVTSPAEEGFAGAGEMYTVKFDYDNGVGSRVDRFKIDLFSPGGQGNGDCGTWVVNLCDKESIGCKDSMGDYDVLIPTNVPNGDYSIRVGRFEDDTLYGCSATFAI 1024
AANAL+VV+P ++V++DR +TVEWTG + RFEIDLYYC S C ++ CG+WVTALCPYG +GCPD+ GDYD++MPEP+SG S SGYKV V +A D+SD CSDDF ++ASE+AP+ G+ G L VTSP++ A AGE+YTV++DY+NG GS DRF +DL+ GG GDCGT+V LCD+ SIGC DS GDYDV IP++ P G YSIRVG F+D+ +Y CS TF +
Sbjct: 16 AANALEVVSPDGGISVLADRAYTVEWTGT-TTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGE-MGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGG--TGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242
BLAST of mRNA_P-littoralis_Contig824.8.2 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE) HSP 1 Score: 242 bits (617), Expect = 3.280e-69 Identity = 123/235 (52.34%), Postives = 159/235 (67.66%), Query Frame = 2
Query: 326 GAANALKVVTPSSPVTVVSDRTFTVEWTGADASSRFEIDLYYCGSMCTENSCGEWVTALCPYGENGCPDNEGDYDVVMPEPLSGISGSGYKVRVADAMDKSDADCSDDFYMLASEEAPDVGDDPGPYLIVTSPAEEGFAGAGEMYTVKFDYDNGVGSRVDRFKIDLFSPGGQGNGDCGTWVVNLCDKESIGCKDSMGDYDVLIPTNVPNGDYSIRVGRFEDDTLYGCSATFAIVG 1030
GA NAL+V +P++ +V+ + TVEWTG +S RF+IDLYYCGS+C E+ CG+WVTALCPYG++GCPD +GDYDVVMPEP+ G S SGYKV V D+ D+SD CS +F ++AS FD+DNG GS V+RF IDL+ GG +GDCGT+V ++CDK SIGCKDS GDYDV+IP++ +G YSIRVG FED ++GCS +F I+G
Sbjct: 15 GAVNALEVTSPAAGDMIVAASSTTVEWTGT-SSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXFDHDNGFGSSVNRFSIDLYMSGG--SGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIG 244 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig824.8.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig824.8.2 >prot_P-littoralis_Contig824.8.2 ID=prot_P-littoralis_Contig824.8.2|Name=mRNA_P-littoralis_Contig824.8.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=462bp MAAAVVVAHACSFLVLGGAANALKVVTPSSPVTVVSDRTFTVEWTGADASback to top mRNA from alignment at P-littoralis_Contig824:51366..60101- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig824.8.2 ID=mRNA_P-littoralis_Contig824.8.2|Name=mRNA_P-littoralis_Contig824.8.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=8736bp|location=Sequence derived from alignment at P-littoralis_Contig824:51366..60101- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig824:51366..60101- >mRNA_P-littoralis_Contig824.8.2 ID=mRNA_P-littoralis_Contig824.8.2|Name=mRNA_P-littoralis_Contig824.8.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1386bp|location=Sequence derived from alignment at P-littoralis_Contig824:51366..60101- (Pylaiella littoralis U1_48)back to top |