mRNA_P-littoralis_Contig824.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig824.2.1
Unique NamemRNA_P-littoralis_Contig824.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig824.2.1 vs. uniprot
Match: D8LI55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI55_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.730e-39
Identity = 110/257 (42.80%), Postives = 134/257 (52.14%), Query Frame = 1 
Query:    1 MGDVIEPCADGGFDIPTTP----VAIPVSRLTSQSS---NDHFTHKPRRIRIQLEDDDDGDVGNXXXXXXXXXXXXXPGRVPVGASADQLLAGTK--IAQCTNNVARATDVEEAAGGSENIVSTPALNRPEYRIYKIETPNEDPMLEILVYLSSESKVAPVSTTSTAINATKTNGTPSSDKNCCRGSCPSVSVSSDGRSVVVDQNPPTEGSGGGSGGVGLREGRFSLKLPQRVVPGTAISFFWEGDLTVRATLADVE 744
            MGDVIE CADGGFDIP T      A P+ R+ +QSS   +D    KPRR+              XXX           GR P  AS ++ L   K  +   +N  A A+   E     E     PA +RPEYRIYKIE P EDP +EI+   S  +  AP+ST               + K    G CPSV +SSDGR  VV++NP  +   GG  GV   +GRF L+LPQRVVP TA+SFF +G LTVRATLA  E
Sbjct:    1 MGDVIEACADGGFDIPATTDTRDTAGPLPRVKTQSSAAMDDRVEPKPRRVXXXXXXXXXXXXXXXXXENGPGRNIL--GRTPPTASVEEGLTDEKAPLHNVSNAAANASRNHEQ--DDEKATDAPATSRPEYRIYKIEMPGEDPTVEIVCSFSDGNLAAPIST---------------ARKKRLSG-CPSVKISSDGRKFVVERNPAADAGDGGGDGV-AEKGRFRLQLPQRVVPTTAMSFFRKGQLTVRATLATSE 236
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig824.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI55_ECTSI1.730e-3942.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig824contigP-littoralis_Contig824:18640..24013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size747
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_005280.1
Cds size747
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791681.030981-CDS-P-littoralis_Contig824:18639..188901680791681.030981-CDS-P-littoralis_Contig824:18639..18890Pylaiella littoralis U1_48CDSP-littoralis_Contig824 18640..18890 -
1680791681.0414507-CDS-P-littoralis_Contig824:18923..190471680791681.0414507-CDS-P-littoralis_Contig824:18923..19047Pylaiella littoralis U1_48CDSP-littoralis_Contig824 18924..19047 -
1680791681.0510974-CDS-P-littoralis_Contig824:19426..196991680791681.0510974-CDS-P-littoralis_Contig824:19426..19699Pylaiella littoralis U1_48CDSP-littoralis_Contig824 19427..19699 -
1680791681.0604012-CDS-P-littoralis_Contig824:23914..240131680791681.0604012-CDS-P-littoralis_Contig824:23914..24013Pylaiella littoralis U1_48CDSP-littoralis_Contig824 23915..24013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig824.2.1prot_P-littoralis_Contig824.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig824 18640..24013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig824.2.1

>prot_P-littoralis_Contig824.2.1 ID=prot_P-littoralis_Contig824.2.1|Name=mRNA_P-littoralis_Contig824.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=249bp
MGDVIEPCADGGFDIPTTPVAIPVSRLTSQSSNDHFTHKPRRIRIQLEDD
DDGDVGNDDDREEGNDGDRDPGRVPVGASADQLLAGTKIAQCTNNVARAT
DVEEAAGGSENIVSTPALNRPEYRIYKIETPNEDPMLEILVYLSSESKVA
PVSTTSTAINATKTNGTPSSDKNCCRGSCPSVSVSSDGRSVVVDQNPPTE
GSGGGSGGVGLREGRFSLKLPQRVVPGTAISFFWEGDLTVRATLADVE*
back to top

mRNA from alignment at P-littoralis_Contig824:18640..24013-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig824.2.1 ID=mRNA_P-littoralis_Contig824.2.1|Name=mRNA_P-littoralis_Contig824.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5374bp|location=Sequence derived from alignment at P-littoralis_Contig824:18640..24013- (Pylaiella littoralis U1_48)
ATGGGCGACGTAATTGAGCCGTGCGCGGACGGAGGGTTCGATATTCCGAC
AACTCCAGTTGCTATCCCAGTTTCTCGACTCACGAGCCAATCGTCGAACG
TGGTCAGTGAAATATGCAGAGAGATGTGTTCAATTTTGTGCTCAATTTCT
CGATCTTGATGGATCTGGTTAGTCTAGTGGAGTAACCCAATCTGTAAGCA
TCGATCTGATTGAATACTCGGTACCCGGTTTGTTCGATGCCCAGGGATAG
GGTAGAGCGACCGTGACGGGTGGTCTTGATGTTGTATTGTTGTGTTTTCG
AGGAACAGAGAGGGGGTTCATGCCAAATTATCTCTCAATTCATCACGTAC
CCAACGCGATCTATCTGCTCATCGCAGTGTGAGTGTGTGTGCGTTGTGCG
TTGTCACGCCGCATCTGTTCTGGACACGAGTCTACAGCAGTGGTTCATAT
TTCAATAAACTGCTGGACTTCGCATGTTTCATGCGGGCTCATCACAGGGT
ACGACACGATAAATCACCCACAACATATCACGGCTTTCACCTTTCACCAA
CAAAAAGAATCCATCCAGATCTCCGGAGAATGAGTCCATATGATAGTGGT
ATGAGGGCATAAAAGGTGCCGCACGAGTAACTAAACCGCCCCCCCGCTCG
TAGTGAAATCATCATACTTCATATCATCCCGCAAACCAAAACAAGTCACA
TCATGAAAATCCCTAACACGTGTGAGTAGTACATTGTCCGAAAATGAATC
AAATCAACGAATTATCCCCGAAACGTAAAGCACTTCACGGACCTGCTCAA
AAATACTCGAGTATTCAACATATTCCGTATAACCATAAAACAACGAGGAA
CAAGGTATAAATCCGAACATGAACCAAATCAATGAATCCCCGGTACTTGA
AGCACTTCACGTATCTGCTGAAAACAGCTCAATGTCATCCCCATCACCAT
CAAACAACAAGGAAAAGTAACGAACATCCACGCAATCCAAAAAAGGGCAG
CGGTCGCGCCCCCCCCCCCCCCCCCGTGTATACTGCTGTGTACCCGTAAG
CAGGATCGAATCATGAGATCGTGCAGGCCTTAGCGCTGGCTTTTAATTGA
TGTCCTATCTCGTCCCGTACACAATACCAGCGCTATGCGCGCAAAGATAA
AACAAACCATCTCCTCCTTGTGAATGTGCTCATAGCTTCCAGTCCTCTAC
GCAGGCGGACGACAAACACACACGAACAGTCCAAACCAGAACAAATCATC
ACAACACAGCAAAGCGGCCTCACTGCTGGCAAATACTTCACGTGAATTCC
TGTTCTTCGCATTCCAACCGCGTACACTCAATCCGACTAGTTAGAAGCAA
AGCCTCGAAACATCTCGCCGATTTGTCATCTCTTTTATTCCATGGAAAAT
ATGCCAACACAAACAACAGAACTTCGTACTCCGGAGTATATGATATGCAA
CAAGCATTCAAAATCCTGAAAGACAAAAATAGGCGAATGGTCAAACTCCG
TTTTCAAGTTGAACCTACCCATACTAAACGCAACCCATCTATTACTACTC
CGGCGATAACAAGAAACCCCCGAACTACCTGCTGCTATGTCGTCTTCTGC
GGCAATAACAAAACAAAACACACCCAAATCCAACACCCCCAAAGAAAACA
AAACAATACTCCGTGGAAGATAAACTCAACATAGAATGCTGACGCGGGTC
AATCTCACAACAAACAAGAGATACTTCGCCATTTATTGCACGCCCCATCC
GACAAACGCTATCTATCCTCGGCAAACGGCCCACCTGCTCCTGCGCCATT
CATTTGATGTCGCCGCACAACATCAACTGGCAACGGCCCCCCTGATTCGA
TAATATTTCCCTTGACCTCCAGGGAACTCTTTATATTATCAAGTACAGAA
AACAGCATGAATCACCGAGAGTTGACAATCTTGCCCGTTTTCAGGATCAG
TGTTAGCTCTGCAAGCGTTGGAAACGCGATTAGGTGTCAGGGGCTTCGTG
ACACAATAGACAAAAAACTGATTTTGCTCGACCCTGCTCGCGGGCGGACG
CTGCAGGTTAAGACCAGGACACACCACAACCAGAATGTTCCCCCTTTCGA
TGTTCTTGAAGGATACTCAAAAAGAAAGGCCAAAAGCCCAGTAACTGATT
CCATCCAAATCAATGCTCGCATTGCGGCGACTAGATAGAATCATGGCATC
CGACCCCCCCCCCCCCCGCTACAATTCTCGGTGGCACTACAGCAGCTGGT
TCATCACATTTTCTTTCAGGTCAAAATCAAAACCAAAAACGAAAACACGA
GATTCTCACAAAAAAAACAAGGAGAAATCTCCAGCGTTTTGGATCGTTGC
CCAGGTCTGATGAGATTCTCTCGTGTCGAACGTGTCCGGTGTGATCACTG
AAAAGCAAGCTGAACTGATGTGTATTTTCTCTCTCGTTGTTCCTAAGCTC
CCTCTCGCTTGCTCCTTCGGATTGGGTTGTGAGCGAGAGGAGGCGTGGCG
CGGGACGAGGGAGACGGCTCGCTTCCGCTCGCACGGATTAACTTCACTAC
ATATGAGAACGTCTCTAACCCAAAGTCTCCGGCTAGATGTACCTGCCCAC
GTGGCTGTACCAACTCAACTGCTATCCGTACTTCCGTTCTCCTATATTAC
TCCAATTCCGTTTCTCTCCTGTGTTTCACATATCTTCCAAACCTGACCCT
TTGATCTCATTTCTTGCAGGATATGTCCCCTTCATCTCAGATCTCATCGA
TCCTTCTATTCACGGCTTGCTGCACTCTAACAGCTTAATTGGGGGAACGG
ATCTGATCTCTTACTTCAAGGAGATCTGATTGCGTCCCTTGATAACTATC
CCGGAACACCAATTTGGGATTACTCCGGAGGGACGGACCTACTTGACAGT
ACAAGATCTGAATGACATACCCGCTCTTGCTTGGTATCTATATCTTAAAT
GGTGCAATACCATGACACAGGCCTCTGCGCTCCCCCCATAGCTGCTGCCG
GTGTCTCCTCCGCTACGACCACCATTCCGACGTTGCCGCGGGTCGGGCCT
CGTTGCGTGTGTATTTCCTCCTGGGTGAAAAGCACAAGCTGTCGCTCCGT
CGAGGGATCGAGACTACTGTTCTTGTTGCGGTGTGTTTAACACTCCGAGT
ACCTGGTCCACACGTACATCATACGGCAGCATGTCCTGCTCGTCAGTGGC
TCCTTGCGAGTTTGCTTACTTCGCTTCATTCGGTTTCGTGAAGCCTGTAC
ATTACTCATCAAGTACACCGTCCGTCGGCTCCACAGGTAACGGTGAATAG
AGCTATGAAACACATGACCAATGCAGAAGTTTACACTACATGATGTACTT
CGGTTTACGACCCTTGCTGCTTGTGAAAGGTGCAACTGGACCGCGGGGAG
AAAGGAATACGTGTGCGTGTAATCTGATACTAAAGGTATAGCTATTATTA
TTGTGACACCCACCGAGACAAAAAAGAGTCGCTAGCAACGGCTGTTTGGG
CCTTGTTGTATTTGTTGTTGTTGTTCTCCTTCTTTTTTCTTCTACTTTTG
AAAGTGCCTACCTCTAGCTGAGAATATTTATCTGATACCAAGCCGATTAT
ACACGACACACAGCAGCAGCAGCAGCAGCAGTAGAAGTAATTGTAGCAGC
AGTACTATTGACAAGCAGTCCTCGAGCGCAGCGAAGTTAACTTCGGTGTC
CAACTGGTTCAGATTCCGCCGATTTGGTCGCGATTATACAGGTTTGAGTG
TTTGTACGAATTAAAAAGTGTCGCGGGGTGCCTCTATCTGAATTTGCGGA
GAATTTCGGTGTTTATATGTGTGTGTCCGAGAAAGTGGCCACCTTTTGCA
ACTCAAGGGCACCACTTCAGCACAGATTGTGACGACCAAGGGCTCGAACT
CATGAGATAAAGAGCATCTACACATTGCTGCTGGAATCACCGCAACCCGT
GTCCTATGCGCACAGCCATGTCGTCGGAGGCGCGCTATTGTGGGTGTTTT
TTAGAAAAAAACGACAAGGGATGTTTTTTGTCCGTTGTGCTGGCGGAACA
CCGGCTTAACACCAGCTTGCTCTTGACACCAGCCCTTCGTATATATTCAA
CAGCAACACCTACGGCTTAACGCAGTTGTTTGAGAAGCGGCCACACCAAC
GCACACTGCCTCTCAACCTCGATCCACGAGCGTGGTAGTCGCAGCTGTAG
TAGAAGGGCCGAAAAAAACACTCGTTGAAAATTAAAAGTTGACTAGGAGT
GAATGAACATCGTGTCCGTGCGTTGCGCCGGACAAACGATCTCGATGCAC
GTCTACCGTCACAGGATCATTTTACGCACAAGCCCCGGAGAATAAGGATA
CAACTTGAAGATGACGACGACGGCGACGTCGGCAATGACGACGATCGCGA
AGAAGGAAATGATGGCGATCGAGATCCTGGGAGAGTACCAGTCGGAGCTT
CGGCAGACCAATTGCTGGCAGGCACGAAGATTGCACAATGCACCAACAAC
GTAGCTCGTGCTACAGACGTAGAGGAAGCAGCCGGAGGAAGTGAAAATAT
CGTGAGCACGCCTGCGCTAAACAGGCCTGAATACAGGGTAAGCCACAGGG
AAAAAGTTAGCTATGTGTTCATTTCACGCGGCACACGGCTGCACATTATC
ATAGTACTTCTACCTGCCAGACCGGACACAGAAATGCGTAGACTGGCGTC
GTCCAGAATATATGGGATGACAACACACACACACACACATCTGCACCCGC
GTTGTCAAAGCCGTCTGTACTGCCGCAATGTCTTGAGTTCATCATGCACG
GCTCAACAGGAACTACAAGCCCTGCACCGGACCGTTCCGTACACTCACAC
CGCGCACCACAGATTTCCTGGCCGAAGCCATGCCACGACTGGCACAAACC
GCAGCAGTAGGTTTCTTCGCATCCACATTCACTTTTTTTTACAAACCTCT
CCTCGCGCCCGTACAGATTTACAAAATCGAGACGCCCAATGAAGACCCCA
TGCTCGAAATCCTCGTTTATCTTTCGAGCGAGAGCAAAGTCGCTCCCGTC
AGCACCACCAGCACCGCGATCAACGCCACCAAAACGAATGGTGGCAACAG
CATCAACAGTGCATCATCATCAGGTACCCCGTCCTCCGACAAAAACTGTT
GCAGGGGCAGTTGTCCTTCCGTGAGCGTATCTTCCGACGGACGAAGCGTC
GTCGTGGACCAAAACCCACCCACGGAGGGTAGTGGTGGTGGTAGTGGTGG
GGTTGGTCTGCGAGAAGGGCGGTTCAGTCTGAAGCTACCGCAGAGAGTAG
TGCCCGGAACAGCGATTAGCTTCTTTTGGGAAGGCGATCTCACAGTCAGG
GCTACTCTGGCGGATGTGGAATAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig824:18640..24013-

>mRNA_P-littoralis_Contig824.2.1 ID=mRNA_P-littoralis_Contig824.2.1|Name=mRNA_P-littoralis_Contig824.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=747bp|location=Sequence derived from alignment at P-littoralis_Contig824:18640..24013- (Pylaiella littoralis U1_48)
ATGGGCGACGTAATTGAGCCGTGCGCGGACGGAGGGTTCGATATTCCGAC
AACTCCAGTTGCTATCCCAGTTTCTCGACTCACGAGCCAATCGTCGAACG
ATCATTTTACGCACAAGCCCCGGAGAATAAGGATACAACTTGAAGATGAC
GACGACGGCGACGTCGGCAATGACGACGATCGCGAAGAAGGAAATGATGG
CGATCGAGATCCTGGGAGAGTACCAGTCGGAGCTTCGGCAGACCAATTGC
TGGCAGGCACGAAGATTGCACAATGCACCAACAACGTAGCTCGTGCTACA
GACGTAGAGGAAGCAGCCGGAGGAAGTGAAAATATCGTGAGCACGCCTGC
GCTAAACAGGCCTGAATACAGGATTTACAAAATCGAGACGCCCAATGAAG
ACCCCATGCTCGAAATCCTCGTTTATCTTTCGAGCGAGAGCAAAGTCGCT
CCCGTCAGCACCACCAGCACCGCGATCAACGCCACCAAAACGAATGGTAC
CCCGTCCTCCGACAAAAACTGTTGCAGGGGCAGTTGTCCTTCCGTGAGCG
TATCTTCCGACGGACGAAGCGTCGTCGTGGACCAAAACCCACCCACGGAG
GGTAGTGGTGGTGGTAGTGGTGGGGTTGGTCTGCGAGAAGGGCGGTTCAG
TCTGAAGCTACCGCAGAGAGTAGTGCCCGGAACAGCGATTAGCTTCTTTT
GGGAAGGCGATCTCACAGTCAGGGCTACTCTGGCGGATGTGGAATAG
back to top