mRNA_P-littoralis_Contig822.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig822.2.1
Unique NamemRNA_P-littoralis_Contig822.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig822.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig822contigP-littoralis_Contig822:30441..34124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size425
Hectar predicted targeting categoryother localisation
Exons2
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791680.0341928-UTR-P-littoralis_Contig822:30440..304671680791680.0341928-UTR-P-littoralis_Contig822:30440..30467Pylaiella littoralis U1_48UTRP-littoralis_Contig822 30441..30467 -
1680791680.0787475-UTR-P-littoralis_Contig822:34041..341241680791680.0787475-UTR-P-littoralis_Contig822:34041..34124Pylaiella littoralis U1_48UTRP-littoralis_Contig822 34042..34124 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791680.0445888-CDS-P-littoralis_Contig822:30467..307541680791680.0445888-CDS-P-littoralis_Contig822:30467..30754Pylaiella littoralis U1_48CDSP-littoralis_Contig822 30468..30754 -
1680791680.0579967-CDS-P-littoralis_Contig822:34013..340411680791680.0579967-CDS-P-littoralis_Contig822:34013..34041Pylaiella littoralis U1_48CDSP-littoralis_Contig822 34014..34041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig822.2.1prot_P-littoralis_Contig822.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig822 30468..34041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig822.2.1

>prot_P-littoralis_Contig822.2.1 ID=prot_P-littoralis_Contig822.2.1|Name=mRNA_P-littoralis_Contig822.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MCPFQHRTPLSYPYDGVSVWYFGRAYVRLLKCCWCTAAEHMIDCMLYFTA
VCLVRYFSSKLSTDSPDSSQTNTIITLYRGKKQHSHLLPSLSATCDLRQA
IDPS*
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mRNA from alignment at P-littoralis_Contig822:30441..34124-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig822.2.1 ID=mRNA_P-littoralis_Contig822.2.1|Name=mRNA_P-littoralis_Contig822.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3684bp|location=Sequence derived from alignment at P-littoralis_Contig822:30441..34124- (Pylaiella littoralis U1_48)
AATCATCGCCTAACTTCCGTGCAGACGAGGTGCATGTGTGTTTATTTCAA
GAACCGTCCTAAGACACACACACACGCGAATGGATGTGTCCGTTTCAACA
CAGAACACCATGTATCTGAAAGATATATTGGGTGTCCTCGTAGCATAGTA
TGATGGATTCTGGATATCTATTTACTACGTAAATTGCAGCCGGTAGGGTA
CGACATTCGGGGAAGTTTCTGGGTAGTTTCCCCGGAGTATCTTGGCATGA
TGGGAGATTCGGTTCAGTGAATTTGGCGACGGAGAGATTCCGTGATGGAT
GTACCACATCCACGTCACTCTGCTTTTGGTCTCTGCGTTTGGTCCCTGCT
TTGATACTCTTCATCTTCTCTGGCGTTTGTTTCCTGCGAGGTCAATAATA
CAACGAGCGTTTCCTACCTCGGCCTATGTGGCCGAGGTGCCCTCATCACC
ACACAACCCCAAGCTTAGCTTACCCCCAGTATCGAACACGCTAGCGAAAG
ACACGTCGTCCACGATATGCGGGTCTAGCTTTGCTAGTTGGGGATTCACT
TCGCAGTGAGGGCGACGGGGCTTTGGAGATCGAGATGATCGTGAGCAGCT
TGGACAAGAAGACCACACCACAGCAGCAGCCGATGTTCAAGCAGCAACAG
CAGCAACAGCAGCACGTCGCCTACTAGGGTCCTAGACCCGCTCAGGCGCG
TGACGACATGCTCATGCTTTTTATCTGCCCGGCTTTGACTTGGACTTGTT
GTTTTGTGTTTTCAGAAGCTGTGATTCTGGATTGAGATTTGGTCTTGCCC
TTTGGTTCATGTTCTGACCTTTTGTCACTGATTGTTATTTTTCGGTCATG
ACTGCTGTATGATACGATCTGACATGACATGTGTGTGTGTCGTAAACGAA
GTAGGAATTGGAGTGTTCAAGTGAATGAGGATACGAAGAACTAAGTGTGT
GTGTGATGGTTTTCAAGCCAACAAAATCACTGCGGTGGGGATCTGCCGCC
ATTGGAACGGTTGCCAGTATACGAGCAAAACTGACAAAAACGAGATTGAA
TGTAGTGGGAATTTCATCGTACCGTGAGAGATCTCATAGCAAGTTTGTAA
GAGGGTGGGTGAAAATTGACGGTAGAGAACTGCAGTTTACCGAAACAGGA
CCTCAGCTAAAAGCGAGACTTCACTTTATATTTACAGAAGAGCCGGTCGC
GGGTTAAATCCCCGCCATGCACTATTGCGCTTATTACATTCCACCAGAGC
AAAACTGGGAACTCGGGGAAGCAAAAGCAGCAAAGGTATGACTTCTCTGC
ATGGGAACTGAGTAGACGAGTCACTGTAATACTTTTCGATTTTTTTAATT
GTCATCAGCAAGAAGCGAGGCATGGTTCTCAAACGAGTTCCCTGACAAAC
ATAGGTCCCAAACCATAGCAATGGCAGACCACGAATAAACTTTGATTTCA
TCACCAATAGAGAACTTCCGACTTTTTTTCCTTTTTGCAGTCATATTTAT
TCTGTGCAAAACCGGCGGGGGGTATGATAGAAGAATTGGTAGTGTATGAT
TTTCCCCGGTAAAAGGACGTACTGTAGTGATGCTGATTTTATGGCGCCCT
GATTAATTTATTTTGTTGTGTCAACTTGATTTTTGTGGGATGTGTGTTCC
AAGAAACTAATCGTGCCACCATCATTCCTCCGAACGCACGCGACCTGCCC
CTTCATCGCCGAGTCAATCCCCCGGGAGCGACAGTTGTGCTCACCCCACC
CGTAGGCGGACAAAAATCTCACCAAGCTCGCGCCGCGGCCAGCCGGACGA
ACGAAAAGCGAAAGGTGGCCGCAGCAGAGGCGAGCGTGAACCGCGGGGGG
GCGGAGAAACAATGGCTTGGGCAACGGACAAAAGCGCTGGGTTTGATGTC
AAGGCAAAAACGTACGTAGGAAAGATTTGTTTTGAATTTGATTGATTTGT
GGAATTGGATTTTTAGGCTTGTTTTGATTTTCGGATTTTGAAGGATAAGG
GTTTATTTGGTTCTTTGGTTCTGCAGGATTTTTTCCATCTTTGAATGTTT
CATATTTTGCGTTTTACCTGCGAAAAGTAGTACTCGTCGGGCCGTATACC
GTCATATTACAAATTATTTTGCCAGTATTGGTCCGGAAGGGCTTGATGAA
CCGTTCGTACTTTTTCATCGTCCCGTCTTCGAGCGTTGAGTCTTTGCGCG
AACTTTTCAGTTTTGTGATGTTGCGTTAGATAATTTCTTCTCCTTTCAGG
AACTGCTTTTGGAATGTAAAGCAACTGCTGATCAACTGCTCCGAAAAATC
ATGGGGGGGTTGATGTGGATCTTGACATGATTCCTCTCATAGCTAGTCAC
AGCAGTTGGTACAGGGAATAATTTGTTTGCAAATGAGGCATCTGACCGCG
TTTTCACTGCTGCTATAATTTAAATTTGAAGGTTGTTGTAGGATCTTTTC
CTAATTTTAGGTTCAGATTCGTTCCGGGACGCTACGACGGCAGGGGGTCC
GTAAGCAGATGAATCTGACATGATGAAGTAACTCTGTTCTTCATGAAATG
AAGTGGAGATTCCCTTTCATCTTCTAACATGATGATGGGCAGCCTACGAA
AATCTCCGTGCTTTTGTTTACTTTGTTTTCAGTTTGTTTATTCCGTGCGG
CATGTGATGGTGCTTCGTGCACCACTGATATTTTTGCGTTGGATTCTGTT
TTTCTTATACAATAATTGGTAGTCGATAAACAATGGTCACTTGGAAAATT
GGTGGTTGGTGAGTTTTCTAGTACTAGTGCCGTTTGTATTTCGATGTCGC
AGGAGGAGTCATTTTCGGAAAGAAGAGGCGTTGTTTGAATCATGTGAAAT
TCGGAAATTAAATCTTAATCATCAGCCGTTTTACATGGTGTGGTTCATGG
TATACAACAAGATTCTTTGATGTTTCGTATATACTGGGGTGCAGGGCAGA
AATATTTTGATTTGCCGTATCATTACGATGCATACGAGCAGGGGGGCTGA
AAGATATATTGGGTGTCCTCGTAGCATAGTATGATGGATTCTGGATATCT
ATTTACTACGTAAATTGCAGCCGGTAGGGTACGACATTCGGGGAAGTTTC
TGGGTAGTTTCCCCGGAGTATCTTGGCATGATGGGAGATTCGGTTCATTG
GATTTGGCGACGGAGAGATTCCGTGATGGATGTACCACATCCACGTCACT
CTGCTTTTGGTCTCTGCGTTTGGTCCCTGCTTTGATACTCTTCATCTTCT
CTGGTGTTTGTTTCCTGCGAGGTCAATAATACAACGAGCGTTTCCTACCT
CGGCCTGTGTGGCCGAGGTGCCCTCATCACCACACAACCCCAAGCTTAGC
TTACCCCCTGTATCGAACAGTATCATACCCGTATGATGGGGTATCTGTAT
GGTACTTTGGTCGTGCATATGTACGGCTGCTAAAGTGCTGCTGGTGTACG
GCAGCAGAGCACATGATTGATTGTATGCTGTACTTTACTGCTGTATGCCT
TGTTCGCTATTTCTCTTCAAAGCTTTCCACCGATTCCCCCGATTCCTCCC
AAACAAATACCATCATAACGCTCTACAGAGGAAAAAAACAACACAGCCAC
CTGCTCCCCTCCCTATCAGCCACCTGCGATCTTCGGCAGGCGATTGACCC
ATCATGAGTGGGTGCTGCTGATGTGTTTGTGATC
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Coding sequence (CDS) from alignment at P-littoralis_Contig822:30441..34124-

>mRNA_P-littoralis_Contig822.2.1 ID=mRNA_P-littoralis_Contig822.2.1|Name=mRNA_P-littoralis_Contig822.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig822:30441..34124- (Pylaiella littoralis U1_48)
ATGTGTCCGTTTCAACACAGAACACCATTATCATACCCGTATGATGGGGT
ATCTGTATGGTACTTTGGTCGTGCATATGTACGGCTGCTAAAGTGCTGCT
GGTGTACGGCAGCAGAGCACATGATTGATTGTATGCTGTACTTTACTGCT
GTATGCCTTGTTCGCTATTTCTCTTCAAAGCTTTCCACCGATTCCCCCGA
TTCCTCCCAAACAAATACCATCATAACGCTCTACAGAGGAAAAAAACAAC
ACAGCCACCTGCTCCCCTCCCTATCAGCCACCTGCGATCTTCGGCAGGCG
ATTGACCCATCATGA
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