mRNA_P-littoralis_Contig821.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig821.5.1
Unique NamemRNA_P-littoralis_Contig821.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig821.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig821contigP-littoralis_Contig821:22700..23079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size369
Hectar predicted targeting categorysignal peptide
Exons2
Cds size240
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791679.687018-UTR-P-littoralis_Contig821:22699..227401680791679.687018-UTR-P-littoralis_Contig821:22699..22740Pylaiella littoralis U1_48UTRP-littoralis_Contig821 22700..22740 -
1680791679.7313688-UTR-P-littoralis_Contig821:22991..230791680791679.7313688-UTR-P-littoralis_Contig821:22991..23079Pylaiella littoralis U1_48UTRP-littoralis_Contig821 22992..23079 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791679.7031543-CDS-P-littoralis_Contig821:22740..228891680791679.7031543-CDS-P-littoralis_Contig821:22740..22889Pylaiella littoralis U1_48CDSP-littoralis_Contig821 22741..22889 -
1680791679.7186832-CDS-P-littoralis_Contig821:22900..229911680791679.7186832-CDS-P-littoralis_Contig821:22900..22991Pylaiella littoralis U1_48CDSP-littoralis_Contig821 22901..22991 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig821.5.1prot_P-littoralis_Contig821.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig821 22741..22991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig821.5.1

>prot_P-littoralis_Contig821.5.1 ID=prot_P-littoralis_Contig821.5.1|Name=mRNA_P-littoralis_Contig821.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=80bp
MCVDRPIVGCLGATFSFLLLLWESKRARQHIDTTAIILYHTLHAGNPPCC
IAHNMHTYTQDMIHRLCYTWYHCTAPMKR*
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mRNA from alignment at P-littoralis_Contig821:22700..23079-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig821.5.1 ID=mRNA_P-littoralis_Contig821.5.1|Name=mRNA_P-littoralis_Contig821.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=380bp|location=Sequence derived from alignment at P-littoralis_Contig821:22700..23079- (Pylaiella littoralis U1_48)
TTGGGGACACCTCTTTTTTTTTTGTGACTTGGGTTTTGAAGGCGCCTATC
TACAGGTATTTTGGGTGTGGTTCCGTGCGCTCGATGGAATGTGTGTGGAT
CGACCAATCGTTGGCTGCCTCGGTGCCACATTTAGTTTTTTATTATTATT
ATGGGAGAGCAAGCGCGCCCGACAGCATAGCATATGATAGTAGACACAAC
GGCGATCATCTTGTATCACACTCTTCATGCCGGCAACCCTCCCTGCTGCA
TTGCACACAACATGCACACATACACACAAGACATGATACATAGACTATGT
TATACCTGGTACCACTGTACCGCTCCTATGAAACGCTGATGATGCTGACG
TACTGCTGCACTCACATACATACCCTGATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig821:22700..23079-

>mRNA_P-littoralis_Contig821.5.1 ID=mRNA_P-littoralis_Contig821.5.1|Name=mRNA_P-littoralis_Contig821.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=240bp|location=Sequence derived from alignment at P-littoralis_Contig821:22700..23079- (Pylaiella littoralis U1_48)
ATGTGTGTGGATCGACCAATCGTTGGCTGCCTCGGTGCCACATTTAGTTT
TTTATTATTATTATGGGAGAGCAAGCGCGCCCGACAGCATATAGACACAA
CGGCGATCATCTTGTATCACACTCTTCATGCCGGCAACCCTCCCTGCTGC
ATTGCACACAACATGCACACATACACACAAGACATGATACATAGACTATG
TTATACCTGGTACCACTGTACCGCTCCTATGAAACGCTGA
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