mRNA_P-littoralis_Contig820.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig820.4.1
Unique NamemRNA_P-littoralis_Contig820.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig820.4.1 vs. uniprot
Match: A0A6H5JIB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB8_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.470e-12
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:  148 LRENHRRSKEAIQFWSLTNQYVRKNGYMVFARFGTLVFTNWQDSKLVRFLSTIHITPEHFI 330
            L +N ++  +   +W+ T QYVRK G MV ARFG LVF  W+DSK+V+FLST+H++P+H +
Sbjct:  565 LVQNTKQLVQDRNYWTATRQYVRKKGEMVLARFGFLVFVQWKDSKVVKFLSTVHLSPKHVL 625
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig820.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIB8_9PHAE1.470e-1250.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig820contigP-littoralis_Contig820:27655..28211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog6500.XP_005099146.1
Preferred namepgbd4
PFAMsDDE_Tnp_1_7,Tnp_zf-ribbon_2
Model size380
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.62e-06
EggNOG OGs28PUT@1|root,2QWHD@2759|Eukaryota,38EA4@33154|Opisthokonta,3BMU4@33208|Metazoa,3CZSB@33213|Bilateria
DescriptionTransposase IS4
Cds size378
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791678.8885517-CDS-P-littoralis_Contig820:27654..279971680791678.8885517-CDS-P-littoralis_Contig820:27654..27997Pylaiella littoralis U1_48CDSP-littoralis_Contig820 27655..27997 +
1680791678.901742-CDS-P-littoralis_Contig820:28176..282111680791678.901742-CDS-P-littoralis_Contig820:28176..28211Pylaiella littoralis U1_48CDSP-littoralis_Contig820 28177..28211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig820.4.1prot_P-littoralis_Contig820.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig820 27655..28211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig820.4.1

>prot_P-littoralis_Contig820.4.1 ID=prot_P-littoralis_Contig820.4.1|Name=mRNA_P-littoralis_Contig820.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=126bp
MVIFVLFYACKELGEQLFNSGCYLACDNYFISPILFMCLQWFGVFAVGTL
RENHRRSKEAIQFWSLTNQYVRKNGYMVFARFGTLVFTNWQDSKLVRFLS
TIHITPEHFILRVYINTWREKTERKA
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mRNA from alignment at P-littoralis_Contig820:27655..28211+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig820.4.1 ID=mRNA_P-littoralis_Contig820.4.1|Name=mRNA_P-littoralis_Contig820.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=557bp|location=Sequence derived from alignment at P-littoralis_Contig820:27655..28211+ (Pylaiella littoralis U1_48)
ATGGTCATATTTGTGTTGTTCTACGCCTGTAAGGAACTGGGGGAGCAGTT
GTTCAATTCTGGGTGCTACTTGGCGTGCGATAACTACTTCATATCGCCCA
TTCTGTTCATGTGTCTGCAATGGTTTGGCGTATTCGCTGTAGGGACGCTT
CGGGAAAACCACAGGAGAAGCAAGGAAGCCATCCAGTTTTGGTCCTTGAC
GAACCAGTACGTGAGAAAGAACGGATACATGGTGTTCGCGCGGTTTGGGA
CCTTGGTGTTCACAAACTGGCAGGACTCCAAGCTCGTACGGTTCCTCTCC
ACGATCCATATCACGCCAGAACACTTCATCCTACGGGTGTACAGTTGAGA
GAAACGACCTCCCGTCCAAGGTTGCAAAGTGATGTTGTTCGTGTTGCCTT
CTCAGGTCTTTTTGTCTGGACTATCCACTCCGCCGAGCCGAATTTCAAAG
CGATGCTCTAAACCCGAACCCCCACCCGCTGTCTATTTGGTGCCCCTTAC
CGAATTTGTTATTTCCGAACAGTAAATACGTGGCGGGAAAAGACGGAAAG
GAAGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig820:27655..28211+

>mRNA_P-littoralis_Contig820.4.1 ID=mRNA_P-littoralis_Contig820.4.1|Name=mRNA_P-littoralis_Contig820.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=378bp|location=Sequence derived from alignment at P-littoralis_Contig820:27655..28211+ (Pylaiella littoralis U1_48)
ATGGTCATATTTGTGTTGTTCTACGCCTGTAAGGAACTGGGGGAGCAGTT
GTTCAATTCTGGGTGCTACTTGGCGTGCGATAACTACTTCATATCGCCCA
TTCTGTTCATGTGTCTGCAATGGTTTGGCGTATTCGCTGTAGGGACGCTT
CGGGAAAACCACAGGAGAAGCAAGGAAGCCATCCAGTTTTGGTCCTTGAC
GAACCAGTACGTGAGAAAGAACGGATACATGGTGTTCGCGCGGTTTGGGA
CCTTGGTGTTCACAAACTGGCAGGACTCCAAGCTCGTACGGTTCCTCTCC
ACGATCCATATCACGCCAGAACACTTCATCCTACGGGTGTACATAAATAC
GTGGCGGGAAAAGACGGAAAGGAAGGCG
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