mRNA_P-littoralis_Contig820.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig820.2.1
Unique NamemRNA_P-littoralis_Contig820.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig820.2.1 vs. uniprot
Match: A0A6H5J5V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5V5_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 8.350e-50
Identity = 78/108 (72.22%), Postives = 89/108 (82.41%), Query Frame = 1 
Query:   13 VAGEWALAGTLQWLAGHGVSAAADGPNMANSTAYAKIKDGIDAINSCGRFRIKWPRTDEELRENSSGFRARSSQLDPVLKHCVGALDGVLIRRTKPSIKEHPCPDRFF 336
            +AGEWALA TL+WLAGHGVSAAADGP+MA STA+AKIK G+DAIN  GR RIKWPR + EL+  +  F AR SQLDPVLK CVGAL+G+L+RR KPSI EHP P RFF
Sbjct:   31 IAGEWALASTLRWLAGHGVSAAADGPHMATSTAFAKIKKGLDAINDYGRLRIKWPRKERELQAKAQRFAARRSQLDPVLKRCVGALNGLLVRRKKPSITEHPYPHRFF 138
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BLAST of mRNA_P-littoralis_Contig820.2.1 vs. uniprot
Match: A0A6H5KV00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV00_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 6.310e-29
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:   13 VAGEWALAGTLQWLAGHGVSAAADGPNMANSTAYAKIKDGIDAINSCGRFRIKWPRTDEELRENSSGF 216
            +AGEWALA TL+WLAGHGVSAAADGP+MA STA+AKIK G+DAIN CGR RIKWPRT+ EL+  + G 
Sbjct:   31 IAGEWALASTLRWLAGHGVSAAADGPHMATSTAFAKIKKGLDAINDCGRLRIKWPRTERELQAKAQGL 98
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BLAST of mRNA_P-littoralis_Contig820.2.1 vs. uniprot
Match: A0A6H5KXS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS3_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 7.340e-21
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:   94 MANSTAYAKIKDGIDAINSCGRFRIKWPRTDEELRENSSGFRARSSQLDPVLKHCVG 264
            MA STA+AKIK+G+DAIN CGR RIKWPRT+ EL+  + GF ARSSQLDPVLK   G
Sbjct:    1 MATSTAFAKIKEGLDAINDCGRLRIKWPRTERELQAKAQGFAARSSQLDPVLKRYKG 57
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BLAST of mRNA_P-littoralis_Contig820.2.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.680e-12
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 1 
Query:   22 EWALAGTLQWLAGHGVSAAADGPNMANSTAYAKIKDGIDAINSCGRFRIKWPRTDEELRENSSGFRARSSQLDPVLKHCVGALDGVLIRRTKPSIKEHPCPDRFF 336
            E+ LA  L++LAG  V    DG  +A STAYA +   IDAIN        WP  ++ L +    +R RS+  + V++ CVGA+DG+ +R T+PS++ H  P  F+
Sbjct:  105 EFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDAL-DQCGMYRRRST--NGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFY 206
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BLAST of mRNA_P-littoralis_Contig820.2.1 vs. uniprot
Match: A0A6H5JFT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT1_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.170e-7
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = -2 
Query:   15 MASIPSLIFAYAVLFAMFGPSAAALTPCPASHCSVPARAHSPA 143
            MAS PSLIFA AV+ AM+GPSAAALTPC ASH +V A AHSPA
Sbjct:    1 MASSPSLIFANAVIVAMWGPSAAALTPCLASHRNVLASAHSPA 43
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig820.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5J5V5_9PHAE8.350e-5072.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV00_9PHAE6.310e-2973.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXS3_9PHAE7.340e-2170.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3F2_9PHAE3.680e-1239.05DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JFT1_9PHAE1.170e-776.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig820contigP-littoralis_Contig820:4634..4969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog159749.K0SNE9
PFAMsDDE_Tnp_4
Model size336
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.68e-06
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota
Descriptionnuclease activity
Cds size336
COG categoryB
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791678.8547187-CDS-P-littoralis_Contig820:4633..49691680791678.8547187-CDS-P-littoralis_Contig820:4633..4969Pylaiella littoralis U1_48CDSP-littoralis_Contig820 4634..4969 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig820.2.1prot_P-littoralis_Contig820.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig820 4634..4969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig820.2.1

>prot_P-littoralis_Contig820.2.1 ID=prot_P-littoralis_Contig820.2.1|Name=mRNA_P-littoralis_Contig820.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
MARYVAGEWALAGTLQWLAGHGVSAAADGPNMANSTAYAKIKDGIDAINS
CGRFRIKWPRTDEELRENSSGFRARSSQLDPVLKHCVGALDGVLIRRTKP
SIKEHPCPDRFF
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mRNA from alignment at P-littoralis_Contig820:4634..4969+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig820.2.1 ID=mRNA_P-littoralis_Contig820.2.1|Name=mRNA_P-littoralis_Contig820.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig820:4634..4969+ (Pylaiella littoralis U1_48)
ATGGCACGGTACGTAGCGGGGGAGTGGGCCCTGGCGGGTACGCTGCAGTG
GCTCGCTGGACACGGTGTTAGCGCTGCGGCTGATGGCCCGAACATGGCGA
ACAGCACGGCGTATGCGAAGATTAAAGACGGAATCGATGCCATCAACAGC
TGCGGGAGGTTTCGGATCAAGTGGCCGCGAACCGATGAGGAGCTGAGGGA
GAATTCAAGTGGATTTCGCGCCCGGTCTTCTCAGCTCGATCCTGTTCTCA
AACACTGCGTTGGAGCTCTGGACGGGGTTCTAATCAGACGCACCAAGCCC
AGCATCAAGGAGCATCCTTGCCCGGATCGATTCTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig820:4634..4969+

>mRNA_P-littoralis_Contig820.2.1 ID=mRNA_P-littoralis_Contig820.2.1|Name=mRNA_P-littoralis_Contig820.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig820:4634..4969+ (Pylaiella littoralis U1_48)
ATGGCACGGTACGTAGCGGGGGAGTGGGCCCTGGCGGGTACGCTGCAGTG
GCTCGCTGGACACGGTGTTAGCGCTGCGGCTGATGGCCCGAACATGGCGA
ACAGCACGGCGTATGCGAAGATTAAAGACGGAATCGATGCCATCAACAGC
TGCGGGAGGTTTCGGATCAAGTGGCCGCGAACCGATGAGGAGCTGAGGGA
GAATTCAAGTGGATTTCGCGCCCGGTCTTCTCAGCTCGATCCTGTTCTCA
AACACTGCGTTGGAGCTCTGGACGGGGTTCTAATCAGACGCACCAAGCCC
AGCATCAAGGAGCATCCTTGCCCGGATCGATTCTTC
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