mRNA_P-littoralis_Contig82.88.5 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig82.88.5 vs. uniprot
Match: D7FJI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI0_ECTSI) HSP 1 Score: 362 bits (928), Expect = 1.090e-113 Identity = 198/250 (79.20%), Postives = 215/250 (86.00%), Query Frame = 3
Query: 1890 MRHLPRTSA--EGTDGSSVSFASEGGPFAVTCPPE----SLSPKKKALRSLSSSHDLFSSLEETRMQDAAAGALARSRKVAKQTWADIGHGGIGDDAGTDESSSYYADPSERFTTTNSERYAPLIKMKKIERGQRSAGFCRQRPSDSVAEASRRQQKSENRLSKVRAHKERVSLSMKTEEVAARLKGERRVRGKARTRLRYNQWVNSMDNWLSDEVPKLADYDRRQFPVQNIRLRGGQQMHEALGGPRAI 2621
MRHLPRTSA G DG+S SF SEGGPFA E SLSPK +L SLSS HDLFSSLEE R+QDA AGALAR+RKVAKQTWADIGHGGIG+DAGTDESSS+YA PSERFTTTNSERYAPLIKMKKIE+GQRSAGFCRQR DS EASRR QKSE+R K++ H ER+SLS+KTEEVAARLK ERRVRGKARTRLRY++WVNSMDNWL DEVPKLADYD+RQFPVQ+ R+RGGQQMHEALGGP AI
Sbjct: 1 MRHLPRTSAMRRGKDGASTSFGSEGGPFAEAPLQEQGEGSLSPKT-SLASLSSCHDLFSSLEEGRLQDATAGALARARKVAKQTWADIGHGGIGNDAGTDESSSFYACPSERFTTTNSERYAPLIKMKKIEKGQRSAGFCRQRLGDSATEASRRMQKSEDRSIKLKEHMERISLSVKTEEVAARLKEERRVRGKARTRLRYSRWVNSMDNWLGDEVPKLADYDKRQFPVQSSRIRGGQQMHEALGGPMAI 249
BLAST of mRNA_P-littoralis_Contig82.88.5 vs. uniprot
Match: D7FJI1_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI1_ECTSI) HSP 1 Score: 296 bits (757), Expect = 1.350e-88 Identity = 173/327 (52.91%), Postives = 212/327 (64.83%), Query Frame = 3
Query: 687 LAVAVNDMQTEHSAASNSYITSTQMAYMSGLHPPPSKVPIMDPYRHRQLLHDRWINRASQRLGDIAILKYGSVKEFFRLYDSNCDGFLDLDEFSEGITMCQLDHLFPRSLQRTIFDKIDKDKSGTIELHEFATFLGRPEDKGAPPGELSVWQKQEQQRKANDAETRSVTLQPIRNHKAQRIKNKLSYYLTKAVPNASAGLADNRTMFLKKQFALINEEAASRGINHNDLVLALGPKGMNLGVSEEDVRLLLKEMDTNSDGNVTLSEFAAFINLDDHEPLYQPLFDGRRRNVNILTSMVEGEAPVESPEETFFKARADQLHSTAVPSK 1667
+A AV++ Q E S S+SYITSTQMAY S N ++ + + + FF C + T+C KSG IEL EFA FLG+ E KGA G+ S QK++ Q++A+D E RSVTLQPI++HKAQRIKNKL++ + +AVPNAS GLADNRTMFLKKQFA ++E+AASRGI+ +LV ALGP+GMNLGV++ED+RLL+KEMDTN DGN+T+ EFAAF+NLDDH+PLYQPLFDGRRRNVNIL +MVE PVESPEE FFKARAD LHS AVPSK
Sbjct: 1 MAAAVDETQMESSGVSDSYITSTQMAYTSD-----------------------GFNVQARDSVTLPPSSTAASRSFF-----GCT--------TPTATVCST--------------STSSAKSGGIELDEFADFLGQSETKGASSGDPSALQKEKTQQQADDVEARSVTLQPIQDHKAQRIKNKLAHCVQQAVPNASTGLADNRTMFLKKQFAFLSEDAASRGISLENLVQALGPRGMNLGVNDEDLRLLVKEMDTNCDGNITVKEFAAFLNLDDHDPLYQPLFDGRRRNVNILQAMVEQAPPVESPEEEFFKARADHLHSVAVPSK 277
BLAST of mRNA_P-littoralis_Contig82.88.5 vs. uniprot
Match: A0A7R9YBQ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBQ5_9STRA) HSP 1 Score: 130 bits (328), Expect = 2.050e-28 Identity = 91/297 (30.64%), Postives = 155/297 (52.19%), Query Frame = 3
Query: 849 INRASQRLGDIAILKYGSVKEFFRLYDSNCDGFLDLDEFSEGITMCQLDHLFPRSLQRTIFDKIDKDKSGTIELHEFATFLGRPEDKGAPPGELSVWQKQEQQRKANDAETRSVTLQPIRNHKAQRIKNKLSYYLTKAVP-NASAGLADNRTMFLKKQFALINEEAASRGINHNDLVLALGPKGMNLGVSEEDVRLLLKEMDTNSDGNVTLSEFAAFINLDDHEPLYQPLFDGRRRNVNILTSMVEGEAPVESPEETFFKARADQLHSTAVPSKALDVEVRMERERRAQAERAKLGR 1736
++RA RL + +LKYGSV++FF +D N +G + L+EFS L+ L PR QR IF+++D D+SG+++L EF + L R E + Q ++ R+ +A + V L+ N +A+ +++ L +T+ + + + + +T +L F I+++ ++ ++ ALGP G+N+ E+D+R++ + MD N D ++ SEF F+N+DD +P Y P +DGRR + L + E +A A+ + A KA V E R E A GR
Sbjct: 164 LDRAIGRLQQLLVLKYGSVRDFFHTFDENHNGKITLEEFSRTFKRRNLERLIPRREQRLIFERLDADQSGSLDLEEFKSALTR---------ETAFSQPLDRMRE--EAREKGVKLRRT-NPRAELVRDALLQKVTQRLRMSKESDSVERKTAYLLNIFKQIDKDMTGL-LSADEFAAALGPGGLNVCAKEDDLRMVFEAMDVNEDERISYSEFIDFLNVDDIDPEYNPFYDGRRAYLLNLHRIAHAPWSFGKQTEGAKRAHAEFMEILAKDKKAAAVAKAQEAARLKAREEALDGR 447
BLAST of mRNA_P-littoralis_Contig82.88.5 vs. uniprot
Match: A0A7S3ZVU3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVU3_9STRA) HSP 1 Score: 114 bits (284), Expect = 4.700e-22 Identity = 82/275 (29.82%), Postives = 132/275 (48.00%), Query Frame = 3
Query: 837 HDRWINRASQRLGDIAILKYGSVKEFFRLYDSNCDGFLDLDEFSEGITMCQLDHLFPRSLQRTIFDKIDKDKSGTIELHEFATFLGR-PEDKGAPPGELSVWQKQEQQRKANDAETRSVTLQPIRNHKAQRIKNKLSYYLTKAVPNASAGLADNRTMFLKKQ-FALINEEAASRGINHNDLVLALGPKGMNLGVSEEDVRLLLKEMDTNSDGNVTLSEFAAFINLDDHEPLYQPLFDGRRRNVNILTSMVEGEAPVESPEETFFKARADQLHSTA 1655
++R N+A +RL +A+ KYG V++ F D N D L LDEFS + L+ LFPR QR ++D IDKD S ++E+ E +L + P A + + QE D +TL P RI +++ Y T+A L + + Q + + N ++ ++V ALGPK +NLGV + +VR L+ +D + +F + + DH P + P FD R R + L + E+ +E K++ Q +ST+
Sbjct: 170 NERVTNKARERLAQLALHKYGGVRQMFDCLDRNNDKELSLDEFSHALKRRNLEKLFPRDQQRLVYDAIDKDFSESVEVEEMVDWLEKDPRAAAARRANEKLLRSQE------DRNIGEITLPPHLREVKDRIADEV-YKRTRATKTEEGNLRQDEYLINGLQNWDVQNRSKGDGTLSPREIVDALGPKYLNLGVPDAEVRELVDYLDLGE--QCKIKQFVKKLEIGDHAPDFNPFFDARDRELVSLKRTIAAPWQWEATDELLAKSKELQGYSTS 435 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig82.88.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig82.88.5 >prot_P-littoralis_Contig82.88.5 ID=prot_P-littoralis_Contig82.88.5|Name=mRNA_P-littoralis_Contig82.88.5|organism=Pylaiella littoralis U1_48|type=polypeptide|length=791bp MEGKGIDSARSGRKRTQVGTTNRSTPSLSPKVPASAAVVASQGEDQGRTTback to top mRNA from alignment at P-littoralis_Contig82:426975..438387- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig82.88.5 ID=mRNA_P-littoralis_Contig82.88.5|Name=mRNA_P-littoralis_Contig82.88.5|organism=Pylaiella littoralis U1_48|type=mRNA|length=11413bp|location=Sequence derived from alignment at P-littoralis_Contig82:426975..438387- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig82:426975..438387- >mRNA_P-littoralis_Contig82.88.5 ID=mRNA_P-littoralis_Contig82.88.5|Name=mRNA_P-littoralis_Contig82.88.5|organism=Pylaiella littoralis U1_48|type=CDS|length=2373bp|location=Sequence derived from alignment at P-littoralis_Contig82:426975..438387- (Pylaiella littoralis U1_48)back to top |