mRNA_P-littoralis_Contig82.38.7 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig82.38.7
Unique NamemRNA_P-littoralis_Contig82.38.7
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig82.38.7 vs. uniprot
Match: D7G9E8_ECTSI (Two component sensor histidine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E8_ECTSI)

HSP 1 Score: 595 bits (1535), Expect = 8.860e-202
Identity = 359/579 (62.00%), Postives = 402/579 (69.43%), Query Frame = 2
Query:  590 MVGSPEFVSLVKSQFNLLATAVPGVGRVVLFVRRENTETGALEFVPAMEYPDRPILMCSVDADGMQMQEGANNPRSSDILVPTTAAAAAAGQAMRAEDLDTPDAIEDEDGSLSAPVVYASLVLGMITVFKNASEEHLSFEGRIKRGGVLAGGDGVVGPGPSVLDDVTSASDGESTAVASSAVWDERDKMLLETVASSVAIGAVLDQKQRWAAVMQVEPLRRVVAESLHQVKNPMTALRTFGKLLLKRLPQDDTLNRELAKDIILQSDRLVDILLPVDAVLGLLATAVERERKAQVPGMVDPKLAEREGLPAAAAGAVXXXXXXXXXXXXXXXXXXXXXXXAADGVVVGVGRENSGIAGSVPKGVQDALLSPSAATTELEESLAWEEEVTAFG---PEEVIRRVARAAQAAAKERRVGFRWRVDDDLPTVVGDERVLEEALSNVVENALKFCKMGRCEGGKDGGVRATVVLRARLSTEAEWGAGSGVVIEVVDNGPGIEAEDLPYIFDRGYRGRQPLQCEVPGTGLGLGIARDTMRSFGGDLEVVN--KDSKED--------DGAWGAGVKLFLPREDRR 2287
            MVGSPEFVSLVK+QF +LAT + G  RVVL+ RRE+TETG+LEFVPAMEYP+RP    S+D DG+QM E   +  SS++L+P     AAAGQ M A   D+PDA+E  DG LSAP+V++SL+LGMITV KN +                   DG   P PS  ++     D E+  V    +W ERDK LLET+A SV + AVLDQKQRWAAVMQVEPLR+VVAESLHQVKNPMTALRTFGKLLL+RLPQDDTLNRELAKDIILQSDRLVDILLPVDAVLGLLATAVERER+AQ+PG                                                                  VQDALLSP A T  +EE++A+E  +  FG    E+VI+ V RAAQAAAKERRVGFRWRVD DLP VVGDER LEEALSNVVENALKFCKMGR EGGKDGGVRATVVLRARLS E EWGA SGVVIEVVDNGPGIEAED+PYIFDRGYRGRQPLQC +PGTGLGLGIARDTMRSFGGDLEVVN  +D+  D        DG WG GVKL+LPR +RR
Sbjct:    1 MVGSPEFVSLVKAQFEVLATVL-GADRVVLYARRESTETGSLEFVPAMEYPERPPPAWSMDIDGVQMHE---HHASSELLLP-----AAAGQEMNA---DSPDAVEGGDGDLSAPIVHSSLLLGMITVIKNGNS------------------DGESRP-PSARENAAPR-DIENARV----LWGERDKRLLETIARSVGVAAVLDQKQRWAAVMQVEPLRKVVAESLHQVKNPMTALRTFGKLLLRRLPQDDTLNRELAKDIILQSDRLVDILLPVDAVLGLLATAVEREREAQMPG------------------------------------------------------------------VQDALLSPPAPTG-MEETVAYE--MMPFGLLSVEDVIQPVTRAAQAAAKERRVGFRWRVDQDLPEVVGDERALEEALSNVVENALKFCKMGRGEGGKDGGVRATVVLRARLSAEPEWGAESGVVIEVVDNGPGIEAEDMPYIFDRGYRGRQPLQCGIPGTGLGLGIARDTMRSFGGDLEVVNMKRDTDGDGGAGGGLKDGGWGTGVKLYLPRGERR 474          
BLAST of mRNA_P-littoralis_Contig82.38.7 vs. uniprot
Match: A0A835ZFA0_9STRA (Two component sensor histidine kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFA0_9STRA)

HSP 1 Score: 327 bits (838), Expect = 2.700e-97
Identity = 244/547 (44.61%), Postives = 304/547 (55.58%), Query Frame = 2
Query:  599 SPEFVSLVKSQFNLLATAVPGVGRVVLFVRRENTETGALEFVPAMEYPDRPILMCSVDADGMQMQEGANNPRSSDILVPTTAAAAA-------AGQAMRAEDLDTPDAIEDEDGSLSAPVVYASLVLGMITVFKNASEEHLSFEGRIKRGGVLAGGDGVVGPGPSVLDDVTSASDGESTAVASSAVWDERDKMLLETVASSVAIGAVLDQKQRWAAVMQVEPLRRVVAESLHQVKNPMTALRTFGKLLLKRLPQDDTLNRELAKDIILQSDRLVDILLPVDAVLGLLATAVERERKAQVPGMVDPKLAEREGLPAAAAGAVXXXXXXXXXXXXXXXXXXXXXXXAADGVVVGVGRENSGIAGSVPKGVQDALLSPSAATTELEESLAWEEEVTAFGPEEVIRRVARAAQAAAKERRVGFRWRVDDDLPTVVGDERVLEEALSNVVENALKFCKMGRCEGGKDGGVRATVVLRARLSTEAEWGAGSGVVIEVVDNGPGIEAEDLPYIFDRGYRGRQPLQCEVPGTGLGLGIARDTMRSFGGDLEVVNK 2218
            S E+ SLV++QF+LL TA+  V R  L  R+EN  TG LEF     YP +  +   VDA G   Q      R+  + +P   +AAA          ++ A+ L+T  A+E+ DG LSAP++Y SLV+GM+TV+++                   GG G               +            W   DK LLE VASS+A+GA LDQ+QRWAA  QVE LRR+++E+LHQ KNP+TALRTFGKLLL+RLP  D LNRELA+DIILQSDRLVD+LLPVD  LG LA                                 XXXXXXXXXXXXXXXXXXXXX  +  G +V V               QDA+                               V RAA+A A+  RV FRWRVDDDLP V G+ER L+EA+SN+V+NALK+ +M    G      R  V+LR RLST+ +WGA  GVVIEV DNGPGI+  DLP +F+RGYRG  PL+   PGTGLGLGIARD MR+ GGD+ + N+
Sbjct:  108 SQEYASLVQTQFDLLVTALD-VARCALGFRKENPATGELEFATIAVYPPKKRVWV-VDAQGRSEQ------RTGPLELPGYTSAAALLPQYPFVSVSLSADGLETSAAVENTDGGLSAPLIYGSLVIGMLTVWRDTPP----------------GGSGSXXXXXXXXXXXXXGTQ-----------WRNADKELLEKVASSLAMGAALDQRQRWAAAAQVEELRRMLSETLHQAKNPLTALRTFGKLLLRRLPAADGLNRELAEDIILQSDRLVDLLLPVDDALGALAAXXXXXXXXXXXXXXX---------------XXXXXXXXXXXXXXXXXXXXXXXWQSGAGELVFV---------------QDAM-----------------------------EPVVRAAEAVAQASRVSFRWRVDDDLPGVYGNERALQEAVSNIVDNALKYVRMRGGAGEAPRDARPVVLLRVRLSTDDDWGASRGVVIEVCDNGPGIDPADLPRVFERGYRGGVPLRSGTPGTGLGLGIARDIMRAMGGDISINNR 560          
BLAST of mRNA_P-littoralis_Contig82.38.7 vs. uniprot
Match: A0A6H5JXI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXI6_9PHAE)

HSP 1 Score: 282 bits (722), Expect = 6.830e-84
Identity = 203/367 (55.31%), Postives = 238/367 (64.85%), Query Frame = 2
Query:  731 MEYPDRPILMCSVDADGMQMQEGANNPRSSDILVPTTAAAAAAGQAMRAEDLDTPDAIEDEDGSLSAPVVYASLVLGMITVFKNASEEHLSFEGRIKRGGVLAGGDGVVGPGPSVLDDVTSASDGESTAVASSAVWDERDKMLLETVASSVAIGAVLDQKQRWAAVMQVEPLRRVVAESLHQVKNPMTALRTFGKLLLKRLPQDDTLNRELAKDIILQSDRLVDILLPVDAVLGLLATAVERERKAQVPGMVDPKLAEREGLPAAAAGAVXXXXXXXXXXXXXXXXXXXXXXXAADGVVVGVGRENSGIAGSVPKGVQDALLSPSAATTELEESLAWEEEVTAFG---PEEVIRRVARAAQAAAKER 1822
            MEYP+RP    S+D  G+Q  E   +  SS++L+P     AA G  M A   D+PDA+E  DG LSAP+VY+SL+LGM+TVFKN +                  GDG     PS  ++    +  E+  +     WDERDK LLET+A SV + AVLDQKQRWAAVMQVEPLR+VVAESLHQVKNPMTALRTFGKLLL+RLPQDDTLNRELAKDIILQSDRLVDILLPVDAVLGLLATAVERER+ Q+ GMVDP  A+RE   A +A   XXXXXXXXXXX                              S   GVQDALLSP + T  +EE++A+E  +  FG    E+VI+ V RAAQAAAKER
Sbjct:    1 MEYPERPPPAWSMDIHGVQTHE---HHASSELLLP-----AATGHEMNA---DSPDAVEGGDGDLSAPIVYSSLLLGMMTVFKNGN------------------GDGKARQ-PSTRENSAPKNIEEARVL-----WDERDKRLLETIARSVGVAAVLDQKQRWAAVMQVEPLRKVVAESLHQVKNPMTALRTFGKLLLRRLPQDDTLNRELAKDIILQSDRLVDILLPVDAVLGLLATAVEREREVQMSGMVDPHAAQREDFAATSAXXXXXXXXXXXXXXD-----------------------------STVDGVQDALLSPPSPTG-MEETMAYE--MMPFGLLSVEDVIQPVTRAAQAAAKER 300          
BLAST of mRNA_P-littoralis_Contig82.38.7 vs. uniprot
Match: A0A6H5JWW5_9PHAE (Histidine kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW5_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 1.390e-66
Identity = 116/144 (80.56%), Postives = 123/144 (85.42%), Query Frame = 2
Query: 1889 EEALSNVVENALKFCKMGRCEGGKDGGVRATVVLRARLSTEAEWGAGSGVVIEVVDNGPGIEAEDLPYIFDRGYRGRQPLQCEVPGTGLGLGIARDTMRSFGGDLEVVN--KDSKED--------DGAWGAGVKLFLPREDRRR 2290
            +EALSNVVENALKFCKMGR EGGKDGGVRATVVLRARLS E EW A SGVVIEVVDNGPGIEAED+PYIFDRGYRGRQPLQC +PGTGLGLGIARDTMRSFGGDLEVVN  +D+  D        DG WG GVKL+LPR +RRR
Sbjct:   19 QEALSNVVENALKFCKMGRGEGGKDGGVRATVVLRARLSVEPEWAAESGVVIEVVDNGPGIEAEDMPYIFDRGYRGRQPLQCGIPGTGLGLGIARDTMRSFGGDLEVVNMKRDTDGDXXXXXXXKDGGWGTGVKLYLPRGERRR 162          
BLAST of mRNA_P-littoralis_Contig82.38.7 vs. uniprot
Match: A0A7S0UAD8_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UAD8_HEMAN)

HSP 1 Score: 220 bits (561), Expect = 2.950e-58
Identity = 176/564 (31.21%), Postives = 272/564 (48.23%), Query Frame = 2
Query:  599 SPEFVSLVKSQFNLLATAVPGVGRVVLFVRRENTETGALEFVPAMEYPDRPILMCSVDADGMQMQEGANNPRSSDILVPTTAAAAAAGQAMRAEDLDTPDAIEDEDGSLSAPVVYASLVLGMITVFKNASEEHLSFEGRIKRGGVLAGGDGVVGPGPSVLDDVTSASDGESTAVASSAVWDERDKMLLETVASSVAIGAVLDQKQRWA--AVMQVEPLRRVVAESLHQVKNPMTALRTFGKLLLKRLPQDDTLNRELAKDIILQSDRLVDILLPVDAVLGLLATAVERERKAQVPGMVDPKLAEREGLPAAAAGAVXXXXXXXXXXXXXXXXXXXXXXXAADGVVVGVGR--ENSGIAGSVPKGVQDALLSPSAATTELEESLAWEEEVTAFGPEEVIRRVARAAQAAAKERRVGFRWRVDDDLPTVVGDERVLEEALSNVVENALKFCKM--GRCEGGKDGGVRATVVLRARLSTEAEWGAGSGVVIEVVDNGPGIEAEDLPYIFDRGYRGRQPLQCEVPGTGLGLGIARDTMRSFGGDLEVVNKDSKEDDGAWGAGVKLFLP 2272
            SPEF SL ++QF +L+  V G  R VL+ RRE+  TG LEFVPA  YP    +   V  +G +       P S  + +P   +A            D  D  +  DG +S P+ Y + V+GM+ +++N SE     E                                        +VW   +K  ++ +ASS+A+  VLDQ+ +++    +Q E LR ++++SLHQVKN ++A+R FGKLLL+RLP DD +NRELAKDI++QSDR+V++L+P D+  G         R + +P    P L    G  + A   V                         DG++  +    E+S   G   +G Q       +   EL E+    +     G    +  V  A+QA A+   + F  ++   LP V GD R+L+EA+SN+++NALK+ ++   R EG     ++ + + ++RL   +E    +GVVI V D+GPG++ E+LP +  RG+RGR  L+   PG+GLGL I ++ +   GG L         +DG     + L  P
Sbjct:   57 SPEFCSLCQAQFEVLSGLV-GASRCVLYFRREDPLTGKLEFVPAAVYPQTQRVW--VVGEGPE-----GRPSSGPVELPGFISAENLMPEYPFNMPDNADGSDISDGGISVPIQYGNTVIGMLAIWRNPSENESGEE--------------------------------------EDSVWTREEKAHVKNIASSLALAIVLDQRNQFSYNEALQAEKLRSMLSDSLHQVKNSLSAVRMFGKLLLRRLPSDDMMNRELAKDILIQSDRMVELLVPYDSDSG---------RASALPYQKKPMLMLGGGKASDAPAGVDVLGTLSDSVAL-----------GPDGLIGDLSEPLESSEAQGD-EEGEQHVYERLDSELAELRETTGEHQMCDVAG---ALSPVVSASQAIAEFDGIDFEMKIAKTLPEVRGDARILQEAMSNLMDNALKYAQIRTDREEGKARVFLKVSKLAKSRLPKGSE----AGVVIMVEDDGPGVDEEELPELCVRGFRGRASLEAGTPGSGLGLHIVQELVSVMGGKLAFAKA---HEDGGLKVTMTLLRP 543          
BLAST of mRNA_P-littoralis_Contig82.38.7 vs. uniprot
Match: A0A7S0NF57_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NF57_9CRYP)

HSP 1 Score: 209 bits (532), Expect = 5.390e-54
Identity = 185/629 (29.41%), Postives = 294/629 (46.74%), Query Frame = 2
Query:  500 GEGEWNEIPPTPXXXXXXXXXXAGGGSEEAMVG--SPEFVSLVKSQFNLLATAVPGVGRVVLFVRRENTETGALEFVPAMEYPDRPILMCSVDADGMQMQEGANNPRSSDILVPTTAAAAAAGQAM-----RAEDLDTPDAIEDEDGSLSAPVVYASLVLGMITVFKNASEEHLSFEGRIKRGGVLAGGDGVVGPGPSVLDDVTSASDGESTAVASSAVWDERDKMLLETVASSVAIGAVLDQKQRWAAVMQVEPLRRVVAESLHQVKNPMTALRTFGKLLLKRLPQDDTLNRELAKDIILQSDRLVDILLPVDAVLG----------------LLATAVERE--RKAQVPGMV---DPKLAEREGLPAAAAGAVXXXXXXXXXXXXXXXXXXXXXXXAADGVVVGVGRENSGIAGSVPKGVQDALLSPSAATTELEESLAWEEEVTAFGPEEVIRRVARAAQAAAKERRVGFRWRVDDDLPTVVGDERVLEEALSNVVENALKFCKMGRCEGGKDGGVRATVVLRARLSTEAEWGAGSGVVIEVVDNGPGIEAEDLPYIFDRGYRGRQPLQCEVPGTGLGLGIARDTMRSFGGDLEVVNKDSKEDDGAWGAGVKLFLPREDRRRRPER 2302
            GE + +++ P P          AG G + + V   SPEF +L ++QF +L+  + G  + VL+ RRE+ +TG L+FVPA  YP++  +   V  +G      A  P S  I +P   +A +          ++  + T   +   DG +S P+ Y S+VLGM+ V++   +E                                               W E D   LE +A S+A+  +LDQK +W   +Q E +R++++E+LHQVKN ++A+R FGKLLL+RLP  D +NRELA+DI++QSDRLVD+LLP+D++                  LL++A +RE  R++    MV   D +L E  G P  A                                      E   I  S+ + + DA+ +      E  ES +          E+V+  +  A+QA A+   + F   + +DLP V  ++R L+EA+SNV++NALK+  +   +  K    +  V L  +     +    + + I + DNG G++  +L  I + GYRG+     ++PGTGLGL IA+D +    G + + N +        G  V++FLP E RR R +R
Sbjct:   87 GEQDMDKLSPPPKNETK-----AGHGKQNSPVMRVSPEFNALCQAQFEVLS-CILGASKCVLYFRREDAKTGQLDFVPAAVYPEKQRVW--VVGEGP-----AGLPASGPIELPGFFSANSMFPEYPFIKRQSSGIAT---VSLADGGISLPLEYGSVVLGMLAVWRENQKE-----------------------------------------------WQEADLKQLEAIARSLAVAVILDQKHQWQEAVQAESMRKMLSETLHQVKNSLSAVRMFGKLLLRRLPGSDKMNRELARDILIQSDRLVDLLLPIDSMSSPARLRQSRSSGHGKPLLLSSAAQREDARRSMASSMVILDDDELNELVGGPTVA--------------------------------------ERMQIE-SLDRSLDDAMETIRKGGNEQGESKSKSTPTKLCVLEDVLSPIISASQAIAEFEEIKFTCELGNDLPRVRINQRALQEAVSNVLDNALKYVLLKDFKRRK----KPLVSLSTQKDEAGDKKNENFLQIIIEDNGKGVQPHELLRICEEGYRGKDAE--DIPGTGLGLHIAKDLISQMKGKMSIENIEE-----GGGLRVRIFLPTEARRVRRKR 602          
BLAST of mRNA_P-littoralis_Contig82.38.7 vs. uniprot
Match: A0A7S4DJM8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJM8_HETAK)

HSP 1 Score: 166 bits (419), Expect = 8.860e-41
Identity = 108/302 (35.76%), Postives = 164/302 (54.30%), Query Frame = 2
Query:  599 SPEFVSLVKSQFNLLATAVPGVGRVVLFVRRENTETGALEFVPAMEYPDRPILMCSVDA-DGMQMQEGANNPR------SSDILVPTTAAAAAAGQAMRAEDLDTPDAIEDEDGSLSAPVVYASLVLGMITVFKNASEEHLSFEGRIKRGGVLAGGDGVVGPGPSVLDDVTSASDGESTAVASSAVWDERDKMLLETVASSVAIGAVLDQKQRWAAVMQVEPLRRVVAESLHQVKNPMTALRTFGKLLLKRLPQDDTLNRELAKDIILQSDRLVDILLPVDAVLGLLATAVERERKAQVPGM 1483
            S E+  L ++QF +++  + G  R  +F+R  +  TGALEF P   +P         D   G++ +EG   PR      ++DIL+PT    A +G    A         +  DG L+  ++Y  + +G++ ++K   E +                           D+  S  D        SA W E+D  +L+ VA+++A+ AVLDQK+RW   MQ++ LRR +AE+LHQVKNP+TA+RTFGKLLL+RLP +D+LNR+LA+D++ QSDRLVD+LLPVD++       VE  R+   P +
Sbjct:  116 SQEYSELCQAQFEVVSDML-GAERATVFLRAAHPLTGALEFRPVANFPRTRRRFIGRDGPSGLEAEEG---PRELAGYSAADILLPTYPFMATSGDGCEA-------CTKHADGGLTCTMIYGGMAVGVLAIWKGEDEAN--------------------------FDNTLSNDDDSFIDEGCSANWSEKDCRMLQNVANTLALAAVLDQKERWEHQMQLDGLRRALAETLHQVKNPLTAVRTFGKLLLRRLPAEDSLNRQLARDLLTQSDRLVDLLLPVDSL-------VEAARRLPAPAL 373          
BLAST of mRNA_P-littoralis_Contig82.38.7 vs. uniprot
Match: A0A7S0YLT3_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YLT3_9CRYP)

HSP 1 Score: 145 bits (367), Expect = 2.520e-35
Identity = 95/276 (34.42%), Postives = 143/276 (51.81%), Query Frame = 2
Query:  599 SPEFVSLVKSQFNLLATAVPGVGRVVLFVRRENTETGALEFVPAMEYPDRPILMCSVDADGMQMQEGANNPRSSDILVPTTAAAAAAGQAMRAEDLDTPDAIEDEDGSLSAPVVYASLVLGMITVFKNASEEHLSFEGRIKRGGVLAGGDGVVGPGPSVLDDVTSASDGESTAVASSAVWDERDKMLLETVASSVAIGAVLDQKQRWA--AVMQVEPLRRVVAESLHQVKNPMTALRTFGKLLLKRLPQDDTLNRELAKDIILQSDRLVDILLPVD 1420
            S EF SL ++QF +L+  V G  R VL+ RRE+  TG LEFVPA  YP    +    +  G         P S  + +P   +A            D+ D  +  DG +S P+ Y + V+GM+ +++N SE                                        +  A    W   +K  ++ +AS++AI  VLDQ+ +++    +Q E LR ++++SLHQVKN ++A+R FGKLLL+RLP DD +NRELAKDI++QSDR+V++L+P D
Sbjct:   22 SSEFCSLCQAQFEVLSGLV-GASRCVLYFRREDPLTGKLEFVPASVYPQTQRVWVVGEGPG-------GRPSSGPVELPGFISAENLMPEYPFNMPDSADGSDISDGGISVPIQYGNTVIGMLAIWRNPSENE--------------------------------------SGEAEDRAWTRGEKTQIKNIASTLAIAIVLDQRNQFSYNEALQAEKLRSMLSDSLHQVKNSLSAVRMFGKLLLRRLPGDDMMNRELAKDILIQSDRMVELLVPYD 251          
BLAST of mRNA_P-littoralis_Contig82.38.7 vs. uniprot
Match: A0A3S1C655_ANAVA (Sensor histidine kinase n=5 Tax=Nostocaceae TaxID=1162 RepID=A0A3S1C655_ANAVA)

HSP 1 Score: 135 bits (340), Expect = 4.170e-30
Identity = 144/564 (25.53%), Postives = 228/564 (40.43%), Query Frame = 2
Query:  590 MVGSPEFVSLVKSQFNLLATAVPGVGRVVLFVRRE--NTETGALEFVPAMEYPDRPILMCSVDADGMQMQEGANN---PRSSDILVPTTAAAAAAG-------QAMRAEDLDTPDAIED---EDGSLSAPVVYASLVLGMITVFKNASEEHLSFEGRIKRGGVLAGGDGVVGPGPSVLDDVTSASDGESTAVASSAVWDERDKMLLETVASSVAIGAVLDQKQRWAA-------VMQVEPLRRVVAESLHQVKNPMTALRTFGKLLLKRLPQDDTLNRELAKDIILQSDRLVDILLPVDAVLGLLATAVERERKAQVPGMVDPKLAEREGLPAAAAGAVXXXXXXXXXXXXXXXXXXXXXXXAADGVVVGVGRENSGIAGSVPKGVQDALLSPSAATTELEESLAWEEEVTAFGPEEVIRRVARAAQAAAKERRVGFRWRVDDDLPTVVGDERVLEEALSNVVENALKFCKMGRCEGGKDGGVRATVVLRARLSTEAEWGAGSGVVIEVVDNGPGIEAEDLPYIFDRGYRGRQPLQCEVPGTGLGLGIARDTMRSFGGDLEVVN 2215
            M  S +F++L + Q +LL   + G    V+++ +E   T TG  + +P + YP+  +L       G +  EG  N   P  + + +P       AG       Q       D  +  E+       +  P++Y  +++G++              GR  R                                     W+ER++  ++ +A S+AI  +LDQ++ W         ++Q E  R ++   LHQ +NP+TA+RTFGKLL KRL Q D  NR++A  I+ +SDRL ++L   D V+ L                                                           AD   + +      +  SV K  Q  LL P       + SLA           E++  +  +AQA A+ER +     + ++LP V  + + L E LSN+++NALK+   G    GK            R+    + G   G+ I   DNGPGI  EDL ++ +R YRG Q  Q E+PGTGLG+ IA+  +    G +EV +
Sbjct:    3 MSASSDFIALCREQISLLTQGL-GASLSVVYLTQELVETSTGEAQLIPVVVYPETGVLR-----QGDESAEGNVNKHIPTGNVLALPNRRKLLTAGGFSPHPSQECGTRSTDESNFQEEYLLTGNQIVLPLIYEGVMMGLLVT------------GREDR------------------------------------AWNEREESQIQRIAQSMAIACILDQRRAWLQQQLHQQQILQ-EQQRDLLDNLLHQFRNPLTAIRTFGKLLFKRLRQVDP-NRDVATSIVRESDRLQELLQQFDQVIDLTE---------------------------------------------------------ADLTAISLPESEFVVEASVQKSPQPVLLLPGTGEKMTDCSLA-----------ELLAPLLVSAQAIAQERNLQLLTDIPNNLPFVQANIKALREVLSNIIDNALKYTPAG----GK-----------IRIQAGQKRGNFQGIAIS--DNGPGIPPEDLDHLGERHYRGVQ-AQTEIPGTGLGIAIAKQLIEQMQGKIEVFS 424          
BLAST of mRNA_P-littoralis_Contig82.38.7 vs. uniprot
Match: D7DZW9_NOSA0 (GAF sensor signal transduction histidine kinase n=1 Tax=Nostoc azollae (strain 0708) TaxID=551115 RepID=D7DZW9_NOSA0)

HSP 1 Score: 133 bits (335), Expect = 2.080e-29
Identity = 135/561 (24.06%), Postives = 237/561 (42.25%), Query Frame = 2
Query:  590 MVGSPEFVSLVKSQFNLLATAVPGVGRVVLFVRRENTET--GALEFVPAMEYPDRPILMCSVDADGMQMQEGANN------PRSSDILVPTTAAAAAAGQAMRAEDLDTPDAIEDED----GSLSAPVVYASLVLGMITVFKNASEEHLSFEGRIKRGGVLAGGDGVVGPGPSVLDDVTSASDGESTAVASSAVWDERDKMLLETVASSVAIGAVLDQKQRWAA-------VMQVEPLRRVVAESLHQVKNPMTALRTFGKLLLKRLPQDDTLNRELAKDIILQSDRLVDILLPVDAVLGLLATAVERERKAQVPGMVDPKLAEREGLPAAAAGAVXXXXXXXXXXXXXXXXXXXXXXXAADGVVVGVGRENSGIAGSVPKGVQDALLSPSAATTELEESLAWEEEVTAFGPEEVIRRVARAAQAAAKERRVGFRWRVDDDLPTVVGDERVLEEALSNVVENALKFCKMGRCEGGKDGGVRATVVLRARLSTEAEWGAGSGVVIEVVDNGPGIEAEDLPYIFDRGYRGRQPLQCEVPGTGLGLGIARDTMRSFGGDLEVVN 2215
            M  S +F++L + Q +LL   + G   +V+++ ++  +T  G  +F+P + YP+  +L      + + + +          P     L+   +AA+ + +   + +   P  +E ED      + +P++Y  +++G++ +            GR  R                                     W+ER++  ++ +A  +AI  +LDQ++ W         V+Q E  R ++   LHQ +NP+TA+RTFGKLL KRL   D  NR++A  I+ +SDRL ++L   D V+ L ++                   +   +P   +  V                                      +  SV K  +  LL P              E+VT     +++  +  +AQA A+ER +     + ++LP V  + + L E LSN+++NALK+   G            ++ ++A        G      I + DNGPGI AEDL ++ +R YRG Q  Q E+PGTGLG+ IA+  +    G++EV +
Sbjct:    3 MSASSDFIALCREQISLLTQGL-GASLIVVYLTQDFVDTPRGEAQFIPVLVYPETAVLRQGDQLNQVMVNQQTQFGHVLALPNQGGKLLTAGSAASESSEKSGSTNTAQPH-LESEDIFTGNQIVSPLIYEGMMMGLLVI------------GRDDR------------------------------------AWNEREENEIQAIAKILAIACILDQRRAWLQQQLHQQQVLQEEQ-RDLLDNLLHQFRNPLTAIRTFGKLLFKRLRPADQ-NRDVATSIVRESDRLQELLQQFDQVIDLTSS-------------------DLTAIPLPESKVV--------------------------------------VEASVEKDAKPPLLLPGTG-----------EDVTDCYLTDLLLPLLISAQAIAQERNLELIADIPENLPLVKANIKALREVLSNIIDNALKYTPAG-----------GSIWIQAGQKKANFQG------IAINDNGPGIPAEDLQHLGERRYRGVQ-AQTEIPGTGLGIAIAKQLIAQMHGEIEVFS 425          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig82.38.7 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9E8_ECTSI8.860e-20262.00Two component sensor histidine kinase n=1 Tax=Ecto... [more]
A0A835ZFA0_9STRA2.700e-9744.61Two component sensor histidine kinase n=1 Tax=Trib... [more]
A0A6H5JXI6_9PHAE6.830e-8455.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW5_9PHAE1.390e-6680.56Histidine kinase domain-containing protein n=1 Tax... [more]
A0A7S0UAD8_HEMAN2.950e-5831.21Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7S0NF57_9CRYP5.390e-5429.41Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S4DJM8_HETAK8.860e-4135.76Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0YLT3_9CRYP2.520e-3534.42Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A3S1C655_ANAVA4.170e-3025.53Sensor histidine kinase n=5 Tax=Nostocaceae TaxID=... [more]
D7DZW9_NOSA02.080e-2924.06GAF sensor signal transduction histidine kinase n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig82contigP-littoralis_Contig82:231762..239419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G9E8
PFAMsHATPase_c
Model size2937
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons9
Evalue3.07e-205
EggNOG OGs2CYMS@1|root,2S572@2759|Eukaryota
DescriptionHistidine kinase-like ATPases
Cds size2256
COG categoryT
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig82.38.7prot_P-littoralis_Contig82.38.7Pylaiella littoralis U1_48polypeptideP-littoralis_Contig82 231811..238787 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791674.2640998-UTR-P-littoralis_Contig82:231761..2318101680791674.2640998-UTR-P-littoralis_Contig82:231761..231810Pylaiella littoralis U1_48UTRP-littoralis_Contig82 231762..231810 +
1680791674.3858354-UTR-P-littoralis_Contig82:238787..2394191680791674.3858354-UTR-P-littoralis_Contig82:238787..239419Pylaiella littoralis U1_48UTRP-littoralis_Contig82 238788..239419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791674.2788575-CDS-P-littoralis_Contig82:231810..2324681680791674.2788575-CDS-P-littoralis_Contig82:231810..232468Pylaiella littoralis U1_48CDSP-littoralis_Contig82 231811..232468 +
1680791674.288981-CDS-P-littoralis_Contig82:233236..2336761680791674.288981-CDS-P-littoralis_Contig82:233236..233676Pylaiella littoralis U1_48CDSP-littoralis_Contig82 233237..233676 +
1680791674.3023884-CDS-P-littoralis_Contig82:234168..2342971680791674.3023884-CDS-P-littoralis_Contig82:234168..234297Pylaiella littoralis U1_48CDSP-littoralis_Contig82 234169..234297 +
1680791674.312524-CDS-P-littoralis_Contig82:235191..2352991680791674.312524-CDS-P-littoralis_Contig82:235191..235299Pylaiella littoralis U1_48CDSP-littoralis_Contig82 235192..235299 +
1680791674.3262103-CDS-P-littoralis_Contig82:235815..2361071680791674.3262103-CDS-P-littoralis_Contig82:235815..236107Pylaiella littoralis U1_48CDSP-littoralis_Contig82 235816..236107 +
1680791674.3359203-CDS-P-littoralis_Contig82:236423..2365681680791674.3359203-CDS-P-littoralis_Contig82:236423..236568Pylaiella littoralis U1_48CDSP-littoralis_Contig82 236424..236568 +
1680791674.349546-CDS-P-littoralis_Contig82:237242..2373121680791674.349546-CDS-P-littoralis_Contig82:237242..237312Pylaiella littoralis U1_48CDSP-littoralis_Contig82 237243..237312 +
1680791674.3591757-CDS-P-littoralis_Contig82:237692..2378321680791674.3591757-CDS-P-littoralis_Contig82:237692..237832Pylaiella littoralis U1_48CDSP-littoralis_Contig82 237693..237832 +
1680791674.3731084-CDS-P-littoralis_Contig82:238513..2387871680791674.3731084-CDS-P-littoralis_Contig82:238513..238787Pylaiella littoralis U1_48CDSP-littoralis_Contig82 238514..238787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig82.38.7

>prot_P-littoralis_Contig82.38.7 ID=prot_P-littoralis_Contig82.38.7|Name=mRNA_P-littoralis_Contig82.38.7|organism=Pylaiella littoralis U1_48|type=polypeptide|length=752bp
MRRRRPGHLPSDVGEVVVLTQLLVFVVISGGGVCLLQQHQPRYRDRSFCM
SRRDAAFFITAATGSAAAPPRLGVTTAAAAATPSYQGFPRFSPKYITVVP
TGLYNSGGGGGETASEQDTQRGVSPSSSNGSSRGEESMHEELLWSRIGWE
GEGEWNEIPPTPAAPSAPSAPAAGGGSEEAMVGSPEFVSLVKSQFNLLAT
AVPGVGRVVLFVRRENTETGALEFVPAMEYPDRPILMCSVDADGMQMQEG
ANNPRSSDILVPTTAAAAAAGQAMRAEDLDTPDAIEDEDGSLSAPVVYAS
LVLGMITVFKNASEEHLSFEGRIKRGGVLAGGDGVVGPGPSVLDDVTSAS
DGESTAVASSAVWDERDKMLLETVASSVAIGAVLDQKQRWAAVMQVEPLR
RVVAESLHQVKNPMTALRTFGKLLLKRLPQDDTLNRELAKDIILQSDRLV
DILLPVDAVLGLLATAVERERKAQVPGMVDPKLAEREGLPAAAAGAVAAA
AAAAAATAVAPTVASSAANVAADGVVVGVGRENSGIAGSVPKGVQDALLS
PSAATTELEESLAWEEEVTAFGPEEVIRRVARAAQAAAKERRVGFRWRVD
DDLPTVVGDERVLEEALSNVVENALKFCKMGRCEGGKDGGVRATVVLRAR
LSTEAEWGAGSGVVIEVVDNGPGIEAEDLPYIFDRGYRGRQPLQCEVPGT
GLGLGIARDTMRSFGGDLEVVNKDSKEDDGAWGAGVKLFLPREDRRRRPE
R*
back to top

mRNA from alignment at P-littoralis_Contig82:231762..239419+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig82.38.7 ID=mRNA_P-littoralis_Contig82.38.7|Name=mRNA_P-littoralis_Contig82.38.7|organism=Pylaiella littoralis U1_48|type=mRNA|length=7658bp|location=Sequence derived from alignment at P-littoralis_Contig82:231762..239419+ (Pylaiella littoralis U1_48)
CAGCAGTCTCCCATCTTGCTATCCATGAGGACCGGTTGTCACACACACCA TGAGGAGACGACGTCCAGGTCATTTGCCATCGGATGTCGGGGAGGTCGTG GTGTTGACTCAGCTACTGGTGTTCGTCGTAATCTCCGGAGGTGGAGTCTG TCTTCTGCAACAACACCAACCCCGGTATCGCGATCGATCGTTCTGCATGA GCCGTCGTGATGCTGCCTTCTTCATCACTGCTGCAACTGGCAGTGCTGCT GCTCCTCCTCGTCTGGGTGTCACTACCGCTGCTGCTGCTGCCACCCCGTC GTATCAAGGATTCCCACGCTTTTCCCCAAAGTATATCACTGTTGTCCCCA CTGGCCTATACAACAGCGGCGGTGGTGGCGGCGAAACCGCGAGCGAGCAA GATACACAACGAGGAGTCAGCCCAAGTAGCAGTAATGGCAGTAGTCGCGG AGAAGAATCAATGCACGAGGAACTGCTGTGGTCCAGGATAGGGTGGGAAG GGGAAGGAGAGTGGAACGAAATACCTCCTACGCCCGCTGCGCCCTCCGCG CCTTCTGCGCCTGCTGCTGGTGGCGGCAGTGAAGAAGCGATGGTGGGGTC GCCGGAATTTGTCAGCTTGGTCAAGTCGCAGTTCAACTTGCTCGCAACGG CGGTTCCGGGGGTGGGCCGAGTCGTCCTGTTCGTGAGGAGGGAGAACACG GAGACAGGTGAAAAGAGGTGGTGGGTGCTGCTGCTATCTACCGCGTGTGC ACAACACGACAGTAGGCATTGTTGTATATGAATAGCCATCACGATTCATG CAAGAGCTCTTGCTGTTTTTGTGTCACATGATCCTCCAGATTCTCCCGCT GTGTCTCTCCTTCTGCTGGATCCGACTTTTCTCAACACAAAGGGGGTACG AGTTACTGTAGTTGTATCGTAGGGCTTTTGGTTCTGAACCTATGATACCA GTCGTGCTGATTTCTTCGACCGATTAGTTGAGAGTGCATCACAGAGTAGA CAAGGTGATGACGGAGCATGCTATACTAGCAGTGGACCATGTATTTCAAG ACCTCGTGGCGGTCTGTTGCGGACTGCCTCAACACGAACTTGAGCCCGGC CCCAAAATTGTCGTGTTGACCTCGTCCGGCAAGAAAAAGGTCATACAGTA CTGCTGTATTTAGCCATGCTGCGCTCGCTCGTGTACTGGTGCACGCGTAA TAGCTAGCACGGGATGTAGATAGGGCTTCGAAGACCGTTAATCGCCGTGT CTGCGACAACGTCATTAATCGCGCCCAGCGCCATGATAGGCTCGTTTCTC TCCCGCTCTCTCTCTCTCTTTCTCTCTCTTTCTCTCTCTTTCTCTCTCTT TCTCTCTCTCGGCAACCTCACCCGACGTCACTTCTACTCTTCTCTCGACT CGTGCGTGTTTTCTACATGCTGCTGTATCTCTCGGGGGCACAATGGCCGC ACCGCATGAACGAAAAATACCACAGGAGCCCTGGAGTTTGTCCCTGCCAT GGAGTACCCCGACAGGCCAATACTCATGTGCAGCGTGGACGCCGACGGCA TGCAGATGCAGGAGGGGGCTAATAATCCAAGGAGCAGTGACATTTTGGTC CCGACGACAGCAGCAGCAGCAGCAGCGGGGCAGGCTATGAGGGCCGAAGA CTTGGACACCCCTGATGCGATAGAGGATGAAGACGGCAGCCTTAGCGCTC CCGTCGTGTACGCCTCCCTCGTGCTGGGAATGATCACCGTGTTCAAAAAC GCCTCCGAAGAGCACCTTTCTTTCGAGGGAAGAATTAAACGGGGGGGCGT TCTTGCGGGGGGGGACGGGGTAGTTGGGCCAGGTCCCTCGGTGCTAGATG ATGTCACATCAGCATCTGATGGAGAGAGCACAGCCGTAGCTTCGTCTGCT GTGTGGGACGAGCGGGTGAGTGGTGAGTTGGGGTAATGAGAGGGCGAGAG ACTTTTCATTATGCTAAACTGATAAAGGAGTCGGATGGATTTCAATGGCA GTGACAGACAGCAGTCGCTATACTCACTGGTGCAATCAATCTGCGCCGCT ACCGATAAAGTATCGAACTCCGGAGAATAATTGGGTGGCAATTAGGCGAC CGACTCATGGGTATCCAAACTCGATCACTCATCGACGTGTGCGAGAAAAG AGTATACCGGCAAGCACACTTCTATCATACCTACCTCCAGTGACGAAGAG CCCCCTTATATATCCTCCTTCGTATGATACGCACCACGTAAACAAGCGGG TGTGGAACGGATTTTTATTTTCATCTGTTTCACAGGTCTTGAATCTGTGG AAAAGTCGGATCCATTATTCCCCTTATTGTTTCCGGTGTGTATTTGTGTG TATGTTTTGTTAATCGTATCCACGCGACCGTGCGACCGTGCGACCGCGCT CGTCCAGGATAAAATGTTGCTAGAAACGGTCGCCTCTTCGGTCGCGATTG GGGCTGTGCTGGACCAAAAGCAGAGGTGGGCGGCGGTCATGCAAGTCGAG CCGCTGAGGAGAGTCGTCGCCGAGTCCTTGCACCAGGTTTGTCAGTCACG TTGACAGAGTTAACTCTGCATTTACTGATGTGGGTACTGCTACGAGCAGT GTCATACCATACACGTGCGTGGAATACAGGAAGCACGCTCCCTAGTGCTG CTACATTCTCCATGCATGCGTGTAAACTCCAAGCAAGTATGATATATACG AGTACTTCGTACATGTTTCGGGCCGCACGGTAGGCAGATAGCCCCTGCCG ACGTTGGTATAGTGGTGTTCACGTTAAGGGCGAGCGACATTTCGATGCAG TGTGGTATAGGATTTCAGGTGTCTCTTCGGGGTGACTGGGCATCACCACT GGGGGTTCTTCCTTACGGTGGAGAGTGGTAACTCCCCCGTAGACATTGGG TCTGGTGCCGTGGACTTATCGCGTCGTACCTAGTTCATGTGCCACTTTTT TTGCCAACGACGAAGTCATTCTCGTGTTCTCGCACTCCGCGCGTATGGAA GTAACACGTGCTTCGTATAGAACTACCATCGTGTATACGTGTTTGGGTTG TGCCTCCTGTTGATAATGCTGTTGCCGTTATTGCTGATGGTGGTGGCGGT GGTTGTGACTGGTAGGAACTAAAGGGAGGAAGGGAGAGCACGCTTAGCGC CCTGACCACTGAAATTACGATTGGTGCCTTGCTTCAGACGCACACCACCG CAGCAGCGATGGCAAGCGGAAGCGACGGCAGTATTCATTAATTCTTCGAT ATTAAACGAAACGAAGCCAGTAGACCAACACCTCGATGTCGATTCAAGCG GTTGAATCGGCGACGCCAAGGTATGATGACCATGCCGCTCGAACAACCAA TGGCGTGCGTTTTTGTTCTTTGTATGATGAGACCCTACGGCATACGGTTT TCTTTACCAAACAAAACGAAAACACACCAGGTGAAGAACCCCATGACAGC GTTAAGGACGTTCGGCAAGCTGCTGCTCAAGAGGTTGCCGCAAGATGACA CGCTGAATCGGGAACTGGCGAAGGACATCATACTTCAGGTGTCATCATCT AGAATGAGCCGAAAGTTTAGGAAGCTGTATCTGTACTCTGTACACGCGGG GAGCACCGCACGGGGCGCCATGGTCCGAGCCGTTGTTCAATGTGTTCGTT CTCGATTTTAGCCTTGAACACGCTCTTTTCGAGTTGCATGCACGCACTGC GATAAGAGTCATCGTGTACAAGCAAGAAGTGGTGGAGGTTCGTGCCTCGA TAGTCCCCACGTGTGCCTACAGCAGTACCGGGGTTCGTGGTTTATTTCTC ACACTGACGCCTTTCCCATCCCCCCCCCCTGGACGTTTCGTTTCGTGCGC TCCTCCCCCCGTGTCTCATGTGTGTGTGTGTTTGTATCCTCTGCCCGTGT CCTCCGTTCTCTCCGCACAAAATTCGCCGGTGGGGTTGGTTGGTTGATGA TCAACGATGGGGGCAACGACGGCTATGCCAAAACGACCAACAATCCGAAA CCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCT CAAGTCGGACCGACTTGTGGATATTCTCCTGCCAGTGGACGCAGTGCTTG GCCTGCTGGCGACGGCCGTAGAGCGAGAGCGCAAAGCGCAGGTGCCGGGC ATGGTGGACCCGAAACTGGCAGAGAGAGAGGGTCTCCCTGCCGCCGCTGC CGGGGCAGTCGCGGCCGCCGCCGCCGCCGCCGCCGCAACAGCAGTAGCAC CGACAGTAGCAAGCTCGGCGGCGAATGTCGCTGCAGATGGAGTGGTGGTG GGGGTGGGCAGAGAAAACTCGGGCATTGCCGGGAGTGTTCCCAAAGGTGC GGTATCGAATCAAGGGAGTATTAGGTGATGTCCGGTGTACCCCATCCGCG GCAAGCGGTCGCTTCACGTACGAACACGCGTTGGCTATTTTTTTTAGTAA ACGCACAGTTCACGCACATTTTTTTTGCAAGGACACACACACGCATTCGT GTGTGTTTTATTCAACCTAACCGCGCAATCTGTTCAATGCTGCAATCATC GTTGATGCTGAGCTAATGTTGGTTTTTGGTGTCTTGGTGTTTGATGCCGC AGCTGTCTTTGTCGTTGCTGATCCCAGGAAGTGTCGGTGTCGGTTTCGCT TGCCCGCAGCAGGGGTGCAGGACGCTCTGCTTTCGCCGTCAGCGGCAACG ACGGAGCTGGAGGAATCCCTGGCGTGGGAGGAAGAGGTGACGGCGTTCGG GCCGGAAGAGGTCATCCGGCGGGTCGCCAGGGCGGCGCAAGCGGCCGCCA AGGAGAGGTAGGCGCGCGTTGGCCACATCCTGTCTCTCAGAAGTGTTACG GTCTTTAGTTGCGTTTGCTGTGACCACGGCATTATAGGGCAGCAAGTCGT CTCTCCGCCGGACAGGTAGGATCAGCACGGGATGATGCAAAGGCACAAAG TCACTTTTGTTCATACTCTTTCGTGTGTTGAGGTCGGAACTTCTGATTCC TCCGTGTTTTGAGAGACCATAGCAGCAAACAGTGCCAACCAGCAGCAGCA GCAACAACCACCCAGTAGCAACGGCTCTTATCAGTCCGTACTGTTGTACT TCGACGAATTATATTTTGCTTGCCGGGGCCCGACTGTTTTGAACATTTTC GTTCCGCTCCGAGACTCGTTGTACCGCACTAACCTCATCACAGTTGAGTT GCGGCTCGTGGTGAACAAGATGAGTCTCAGCTTGTCACGAAAAATAATAA AGAAAACTGGATTGAGAAGCACAGCTCACCCAGCAGCAGTTGGGCTTGAC TGCAAATCTTGGTATACCGATACGTAGGGATACCTTGGCGCTGGAGATAA ATGGATGGGGAGCTGAGCCTCGACCCCGACTTTGACGTATCTTCATCGAC GGGCCCGTATTGTCTGCATACGGTATACAACCAAAGCTTGCTGCACGGCG GTGCTGTGTGTGTGCCGTCCGAATCTCACAGGCGGGTGGGGTTCAGATGG CGCGTGGACGATGACCTTCCAACAGTTGTCGGCGACGAGCGGGTGCTTGA GGTACGCATGCACTGCACAGCACAGCACGTACGTACACAGCAGCAATTTA TAAAAAAATTAGGAATAAATTTGGACCAAGAGAGACATGAAAACGGGGGG GGGGGGGTAGTGTGGAAGAGGACCTCTTCGCAGGGGGTACATTCCCACAA CGTCTGTCGAGGACGGATTTTTCTCTTTTCACATGAAAAAATAATGAAAA TCACAAACAGATGATGGAGAAGAGGATCGAATCACTCTTCCTGACACAAA AGTTTGATTGCAACCCTCAATGATGGATTTGTTTGGCGAACATTTGAACT GTGTCTTCTCCCTGTCCTGTTTTGTTTTTTCGTTCTTGTATGATGTATGA CATATATAATACTTCGTATTTTGTTTTTCAGGAGGCTTTGTCCAACGTCG TGGAAAACGCGCTCAAATTCTGCAAGATGGGTCGCTGCGAGGGCGGGAAA GACGGCGGGGTTCGGGCGACGGTAGTCTTGAGAGCGCGGCTGAGCACAGA GGCGGAGTGGGGAGCCGGCAGGTGGGGGGCGCGATGATTTTTTCTTTTCT TCTCTTGCCCAACATTGAAAGGATGTGGGTGTGGGTATGTGGGGTGGGGG TGGGGGCGGGGGGGGTTCAGGGCAAGGGAACCTTCCTTCCGGCTGAACAA CGCTTTCATATCAGTAGGCAAAGAGGATACACGGGTGCGCGCAGAAAACA TGAGATGTGCGTTTCTTTCTCACCCGGCTGTAGCAGTACACACGCACAAC CAATCAGAATTTTCCTTGCAAAAAAATTGACGAATCAGAAAACTGTGGGC ACCTTTTCTCTGAAGATGAACAGTACAGGCTGTTTGAGCCCGTGCCTCCA ATACGCTAACAGTATACCCCCCCCCCCCTACCGCCCTGTCGCCCTGTCGC TTCACCCTACCCGTCTATCGTTCATCGTGCATGCACCGGTATCCCTATCG GTCGTTTGTTGTATTTTTTGTCGTTTGTTTTTCCGCACTTGTTTATGACA TGCATTGTTATGGTATGATATCGTATGTTACGATGTGATTTGATGTTGGA TGGGATGGGATGGGATGTATGGGATGGCATGGCATGGTTTGGTATGATTT GGCACGGTATGGTATGGTATGGTATGGTATGGTATGGCATGGTGTGATAC TGTATGGCATGGTTTGGTATGGTGTGGCACGGTAATTAACACTGCTCAAA AGCGGCGTCGTGATCGAAGTGGTGGACAACGGGCCTGGAATCGAGGCCGA AGACCTCCCTTACATCTTCGACCGCGGGTACAGAGGAAGACAGCCCCTTC AGTGCGAGGTTCCCGGGACGGGGCTAGGCCTGGGGATCGCCAGGGACACT ATGCGCTCCTTCGGTGGTGACCTGGAGGTTGTGAACAAGGATAGCAAGGA GGACGACGGGGCCTGGGGGGCGGGGGTAAAGCTTTTTCTCCCAAGGGAGG ATCGGAGAAGAAGACCAGAACGATGACGTTTTTTTTTTGTATCGTTGGTT GATAGCTCGCTGAGATTCAACCCGGCCCGCGGTCACAAGAGTGCTGCGTA CTTGAAGGGAGACGGGTGTGGTGTGCTGTGGTGAGGTGTGGTGTGACGGG TGAGATGAGGCGGCGATGGATTGTGGATATGATGCGAAGTTTAGTTCCGT CAAGTTACAGGGAGGGTAAACTCAAGTCCGTACCCTCCCCTGTGAGGAGG TGTGTGAGGCGTGAACAAGATAGGTGTTGCTGTGTCGAGTTTTTATTTTG TGTGTTGGCAAATACGTTGCCTGAACGTATTGAAATAATTATCTCGACGG GGAGGGGATTTACTTCTCGTACTACTTTAGCTCGTGTGTGACCCCGGCTG AACATCAGGGATATTTACCGAAAGGTGCATAGACAGGCGCTAGAAAAAAT GGGGCGTACGCACTACTTAAACGTAGTAGGACTGCAGCGCTGCTGCAAGC AGTCTTTGCGAGCAATATTATTGGCTTGCAGTTGGTCACTTCGGCGTGAG ATTTCCTGGTCTTGCAATGCAAGACGGATGGCAGCAGCACAATTTTGAGG TTTCTCCTGAGGTGACGAAACGGAAAATATAGAGCCTAGAAAAGACTCAC TGCACCGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig82:231762..239419+

>mRNA_P-littoralis_Contig82.38.7 ID=mRNA_P-littoralis_Contig82.38.7|Name=mRNA_P-littoralis_Contig82.38.7|organism=Pylaiella littoralis U1_48|type=CDS|length=2256bp|location=Sequence derived from alignment at P-littoralis_Contig82:231762..239419+ (Pylaiella littoralis U1_48)
ATGAGGAGACGACGTCCAGGTCATTTGCCATCGGATGTCGGGGAGGTCGT
GGTGTTGACTCAGCTACTGGTGTTCGTCGTAATCTCCGGAGGTGGAGTCT
GTCTTCTGCAACAACACCAACCCCGGTATCGCGATCGATCGTTCTGCATG
AGCCGTCGTGATGCTGCCTTCTTCATCACTGCTGCAACTGGCAGTGCTGC
TGCTCCTCCTCGTCTGGGTGTCACTACCGCTGCTGCTGCTGCCACCCCGT
CGTATCAAGGATTCCCACGCTTTTCCCCAAAGTATATCACTGTTGTCCCC
ACTGGCCTATACAACAGCGGCGGTGGTGGCGGCGAAACCGCGAGCGAGCA
AGATACACAACGAGGAGTCAGCCCAAGTAGCAGTAATGGCAGTAGTCGCG
GAGAAGAATCAATGCACGAGGAACTGCTGTGGTCCAGGATAGGGTGGGAA
GGGGAAGGAGAGTGGAACGAAATACCTCCTACGCCCGCTGCGCCCTCCGC
GCCTTCTGCGCCTGCTGCTGGTGGCGGCAGTGAAGAAGCGATGGTGGGGT
CGCCGGAATTTGTCAGCTTGGTCAAGTCGCAGTTCAACTTGCTCGCAACG
GCGGTTCCGGGGGTGGGCCGAGTCGTCCTGTTCGTGAGGAGGGAGAACAC
GGAGACAGGAGCCCTGGAGTTTGTCCCTGCCATGGAGTACCCCGACAGGC
CAATACTCATGTGCAGCGTGGACGCCGACGGCATGCAGATGCAGGAGGGG
GCTAATAATCCAAGGAGCAGTGACATTTTGGTCCCGACGACAGCAGCAGC
AGCAGCAGCGGGGCAGGCTATGAGGGCCGAAGACTTGGACACCCCTGATG
CGATAGAGGATGAAGACGGCAGCCTTAGCGCTCCCGTCGTGTACGCCTCC
CTCGTGCTGGGAATGATCACCGTGTTCAAAAACGCCTCCGAAGAGCACCT
TTCTTTCGAGGGAAGAATTAAACGGGGGGGCGTTCTTGCGGGGGGGGACG
GGGTAGTTGGGCCAGGTCCCTCGGTGCTAGATGATGTCACATCAGCATCT
GATGGAGAGAGCACAGCCGTAGCTTCGTCTGCTGTGTGGGACGAGCGGGA
TAAAATGTTGCTAGAAACGGTCGCCTCTTCGGTCGCGATTGGGGCTGTGC
TGGACCAAAAGCAGAGGTGGGCGGCGGTCATGCAAGTCGAGCCGCTGAGG
AGAGTCGTCGCCGAGTCCTTGCACCAGGTGAAGAACCCCATGACAGCGTT
AAGGACGTTCGGCAAGCTGCTGCTCAAGAGGTTGCCGCAAGATGACACGC
TGAATCGGGAACTGGCGAAGGACATCATACTTCAGTCGGACCGACTTGTG
GATATTCTCCTGCCAGTGGACGCAGTGCTTGGCCTGCTGGCGACGGCCGT
AGAGCGAGAGCGCAAAGCGCAGGTGCCGGGCATGGTGGACCCGAAACTGG
CAGAGAGAGAGGGTCTCCCTGCCGCCGCTGCCGGGGCAGTCGCGGCCGCC
GCCGCCGCCGCCGCCGCAACAGCAGTAGCACCGACAGTAGCAAGCTCGGC
GGCGAATGTCGCTGCAGATGGAGTGGTGGTGGGGGTGGGCAGAGAAAACT
CGGGCATTGCCGGGAGTGTTCCCAAAGGGGTGCAGGACGCTCTGCTTTCG
CCGTCAGCGGCAACGACGGAGCTGGAGGAATCCCTGGCGTGGGAGGAAGA
GGTGACGGCGTTCGGGCCGGAAGAGGTCATCCGGCGGGTCGCCAGGGCGG
CGCAAGCGGCCGCCAAGGAGAGGCGGGTGGGGTTCAGATGGCGCGTGGAC
GATGACCTTCCAACAGTTGTCGGCGACGAGCGGGTGCTTGAGGAGGCTTT
GTCCAACGTCGTGGAAAACGCGCTCAAATTCTGCAAGATGGGTCGCTGCG
AGGGCGGGAAAGACGGCGGGGTTCGGGCGACGGTAGTCTTGAGAGCGCGG
CTGAGCACAGAGGCGGAGTGGGGAGCCGGCAGCGGCGTCGTGATCGAAGT
GGTGGACAACGGGCCTGGAATCGAGGCCGAAGACCTCCCTTACATCTTCG
ACCGCGGGTACAGAGGAAGACAGCCCCTTCAGTGCGAGGTTCCCGGGACG
GGGCTAGGCCTGGGGATCGCCAGGGACACTATGCGCTCCTTCGGTGGTGA
CCTGGAGGTTGTGAACAAGGATAGCAAGGAGGACGACGGGGCCTGGGGGG
CGGGGGTAAAGCTTTTTCTCCCAAGGGAGGATCGGAGAAGAAGACCAGAA
CGATGA
back to top