mRNA_P-littoralis_Contig82.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig82.4.1
Unique NamemRNA_P-littoralis_Contig82.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig82.4.1 vs. uniprot
Match: A0A6H5JZL6_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZL6_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.370e-16
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:  217 RVSTERECMAILWAVDHFKPYLAGRAFRLVTDCSALTWLFRS 342
            R  TERECM +LW VDHFKPYLAGR F++VTDCSALTWLFRS
Sbjct:  162 RGPTERECMGVLWGVDHFKPYLAGRLFKVVTDCSALTWLFRS 203
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BLAST of mRNA_P-littoralis_Contig82.4.1 vs. uniprot
Match: A0A6H5JIH2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIH2_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 4.390e-16
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:  217 RVSTERECMAILWAVDHFKPYLAGRAFRLVTDCSALTWLFRS 342
            R  TERECM +LWAVDHF+PYLAGR F+LVTDCSALTWLFRS
Sbjct:  228 RGHTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRS 269
[Close]
BLAST of mRNA_P-littoralis_Contig82.4.1 vs. uniprot
Match: A0A6H5JZD5_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD5_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 6.850e-16
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:  217 RVSTERECMAILWAVDHFKPYLAGRAFRLVTDCSALTWLFRS 342
            R  TERECM +LWAVDHF+PYLAGR F+LVTDCSALTWLFRS
Sbjct:  101 RGPTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRS 142
[Close]
BLAST of mRNA_P-littoralis_Contig82.4.1 vs. uniprot
Match: A0A6H5JB61_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB61_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 7.970e-16
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:  217 RVSTERECMAILWAVDHFKPYLAGRAFRLVTDCSALTWLFRS 342
            R  TERECM +LW VDHFKPYLAGR FR+VTDCSALTWLFRS
Sbjct:  199 RGPTERECMGVLWGVDHFKPYLAGRQFRVVTDCSALTWLFRS 240
[Close]
BLAST of mRNA_P-littoralis_Contig82.4.1 vs. uniprot
Match: A0A6H5KIS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS6_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 8.960e-16
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:  196 VQSENRTRVSTERECMAILWAVDHFKPYLAGRAFRLVTDCSALTWLFRS 342
            +Q++ R R  TERECM +LWAVDHF+PYLAGR F+LVTDCSALTWLFRS
Sbjct:  354 LQTDAR-RGLTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRS 401
[Close]
BLAST of mRNA_P-littoralis_Contig82.4.1 vs. uniprot
Match: A0A6H5K9Z4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Z4_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 9.650e-16
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:  217 RVSTERECMAILWAVDHFKPYLAGRAFRLVTDCSALTWLFRS 342
            R  TERECM +LWAVDHF+PYLAGR F+LVTDCSALTWLFRS
Sbjct:  399 RGPTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRS 440
[Close]
BLAST of mRNA_P-littoralis_Contig82.4.1 vs. uniprot
Match: A0A6H5KGF2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF2_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 9.890e-16
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:  217 RVSTERECMAILWAVDHFKPYLAGRAFRLVTDCSALTWLFRS 342
            R  TERECM +LWAVDHF+PYLAGR F+LVTDCSALTWLFRS
Sbjct:  375 RGPTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRS 416
[Close]
BLAST of mRNA_P-littoralis_Contig82.4.1 vs. uniprot
Match: A0A6H5JQV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV6_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 9.950e-16
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:  217 RVSTERECMAILWAVDHFKPYLAGRAFRLVTDCSALTWLFRS 342
            R  TERECM +LWAVDHF+PYLAGR F+LVTDCSALTWLFRS
Sbjct:  500 RGPTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRS 541
[Close]
BLAST of mRNA_P-littoralis_Contig82.4.1 vs. uniprot
Match: A0A6H5KFK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK7_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.030e-15
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:  217 RVSTERECMAILWAVDHFKPYLAGRAFRLVTDCSALTWLFRS 342
            R  TERECM +LWAVDHF+PYLAGR F+LVTDCSALTWLFRS
Sbjct:  502 RGPTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLFRS 543
[Close]
BLAST of mRNA_P-littoralis_Contig82.4.1 vs. uniprot
Match: A0A6H5JZ05_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ05_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.040e-15
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:  217 RVSTERECMAILWAVDHFKPYLAGRAFRLVTDCSALTWLF 336
            R  TERECM +LWAVDHF+PYLAGR F+LVTDCSALTWLF
Sbjct:  142 RGPTERECMGVLWAVDHFRPYLAGRRFKLVTDCSALTWLF 181
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig82.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZL6_9PHAE3.370e-1680.95RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JIH2_9PHAE4.390e-1683.33Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JZD5_9PHAE6.850e-1683.33RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JB61_9PHAE7.970e-1683.33RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KIS6_9PHAE8.960e-1675.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9Z4_9PHAE9.650e-1683.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGF2_9PHAE9.890e-1683.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQV6_9PHAE9.950e-1683.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFK7_9PHAE1.030e-1583.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZ05_9PHAE1.040e-1582.50RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig82contigP-littoralis_Contig82:7823..11734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7029.ACYPI062075-PA
PFAMsRVT_1,Retrotrans_gag,gag-asp_proteas,rve
Model size343
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.8e-09
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,41WI3@6656|Arthropoda,3SIRK@50557|Insecta,3ECJT@33342|Paraneoptera
DescriptionK02A2.6-like
Cds size342
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791672.5684044-CDS-P-littoralis_Contig82:7822..79461680791672.5684044-CDS-P-littoralis_Contig82:7822..7946Pylaiella littoralis U1_48CDSP-littoralis_Contig82 7823..7946 +
1680791672.5802023-CDS-P-littoralis_Contig82:11516..117341680791672.5802023-CDS-P-littoralis_Contig82:11516..11734Pylaiella littoralis U1_48CDSP-littoralis_Contig82 11517..11734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig82.4.1prot_P-littoralis_Contig82.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig82 7823..11734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig82.4.1

>prot_P-littoralis_Contig82.4.1 ID=prot_P-littoralis_Contig82.4.1|Name=mRNA_P-littoralis_Contig82.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
RLRRSVSAGPPRQNRTSCLGNEAGAARTGIERGISFSCSSSATLPAEHSA
LWRMLCVWSPHLLYGVQSENRTRVSTERECMAILWAVDHFKPYLAGRAFR
LVTDCSALTWLFRS
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mRNA from alignment at P-littoralis_Contig82:7823..11734+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig82.4.1 ID=mRNA_P-littoralis_Contig82.4.1|Name=mRNA_P-littoralis_Contig82.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3912bp|location=Sequence derived from alignment at P-littoralis_Contig82:7823..11734+ (Pylaiella littoralis U1_48)
CGTTTGCGTCGAAGCGTTTCGGCAGGCCCTCCACGACAAAACCGAACCTC
CTGCTTGGGCAATGAAGCTGGCGCTGCCCGAACCGGAATCGAACGCGGCA
TCTCTTTCAGCTGCAGTAGCTCAGGTGAATTCGCGTGCGCTCACACTTGA
CTTGTCAGCTGACAGTGATACGGTTGGACCAAACGATACATCCTCGCCAA
ACCTCTCGTCTCCCACAACCAATCGTCTGACAAACCAACGCACTAACGTG
GTAGATCAACGAAACAGCAGTAGTAACGCAGCCAGCTCGGTAAACCAATA
CTCTAACTTGGTAAACCCAGTACAAGCTAGTGATGCACGATTCACGCTCA
AACCAAACGACCTCCCTCCCTCTCTCATGCTCCAAGGCGTCCCGAATGAA
GATGTTCCCGAGATAATGAATCTTTACAGGGCACACATCAGACTCTTGTC
GCATGATACTGTCTCGGAAAAACAATTGATCACCGACCAATCAAACACCT
TGCACTACTCGTACGAGGAGCCGCGGCGCAAAGCTTGAGCCTTATTCTTA
GCTCATCCCTAGAATGGAGGCCCGAAACCCAGCTAGCTCACCTCCGCGCG
CAGGGTGAACGTATCTCAATCACACCTCCGAACACTTGGCATGATGACTA
GGTGACCGCTTCACGCACTCTCGAAGCTCCTGTCGCTTAGAGGAGCAGGC
AAAAAAAGATGGGTCTTCCATCTCGAAAAAATAGAGTTGCCCATCTAGGA
TTCATCCCTCAGCTAGTTTGGGACAACAGTCAGTCAACTCGCTAAAACCA
GTTGGAAACTGCGTAGAACTGCCAACCGATGGCAGCAGAGTTGAAGCAGA
CAAGAGGGATGCTAAACGCTATAGTAATAGTGTAAAGTATCTGGTGGGAG
GTGAACCAAGAAACAATCGATCGGAAGCAGACCTTCAGCGCTGTAGAACA
ACGGTCGGAATTATTAAGAGGAATAGACGGATTCCCCGTAACAGATGTTT
TTCACGTTACAGATTTGTTTTTCAAGTTAGAGGTTATCCCGCGTTTTTTC
TCACGTTAGAGCAATCCCCCGCTGCCATAACGTGATTTTCATAACTTGAA
AAAAATCGGGAAAAGTCCGAAAAACTTTTGTGGTTTCGTGTTTTTCATGT
CATGATGATGCTTTTGTGCCGGTTGGTCATTCGCTGTGTGTTTGAATATC
TAGTAGTTTCTTGGTAGTTTCAAGCGCAAGCAGTAATAATGGTTGCTGCT
GCTGTATTACACTTGTCCCAATACACCGACAGAGAGAGAGCGCGAGAGAG
AACAACTCCTCTTCGCTTTGATATCACCACAGCTACAGGCAGCAGCAGTC
GGAGTGTCAAACCATCTGTCAGCACCTCTTCGTATGAGACGTGCTCGCCC
TAAACCCTAACCCTAACCCTATGAAAGGTCGGATGCGGCTGCTGCCGTGC
TGCTGCTAACTGCTGCTGCTGCTTGTGCTGTAGGGTGCGATATGATGTTT
GTGCAACTCTGTACTACATCATCAGATCAGAGAAGAAGCGGAATAGAAGA
AGAAGCCGCACACAGCAATAATAGGTAGGTATGTGTGTGTGTTGTGTGTG
TGTTGTCGTCCCTTTAATTGGACGTCACTCTACACCTTTCGGGTAGGTCG
ACGCTCCAACCGGGGTCACACAGGGGGAAGTCAACACAGGAGTTTTTTTT
TTTTCTCCACTTCGCTCTGCGGTGCTTGCCTTGTTTTGGTTGAGCTTTTA
TCGCGAGAAAGGGGACAGCAATCCCTTTCCCTCGTCGATGGTACGATCGA
ATTTTGTTTACTCACGAATTAATCGCTTTCCACTTTCACGCGCATTGTGA
GAAGAAAACCCAGATCGTGTTACAGTACTGCACTGGGATTCGAACTCACG
AGTAAATGTCAGAAGGTTACGTGGATTAGTGTTAATATGGTTGACGACCG
TTACACCGAAGGGGTTCCATCTGAAGGAAGCCTTCGGGGTACTGCAGATG
GTACCAGCGTATTGATAAAAGTCCACTCGCTGAGACCCCGCGTCTACAAG
AAAGAGGTCAACCAATGGTAGATGACAAGAATAAATAACCATTGGATGAC
GGCAGAATACAATGGTACTTCGAAGTAGATGACAAGAATAATGGTTATTT
ATTCTTGTCATCTACCATTGAGGCCAACCACCCTCCTTCCTCATTCCGAG
TTGCCCGCTGAACATCACAACTCTAGCTACACCCTTTCCGTCTAAGAACG
ACACAGCTATACCATCAGCTTCCGAGCTTCTTCCTTTATCGCGTACGTGA
GCTCCTCGATCTCGGTGACCACAGCCAGTCGACACGTCTTACTACGGACC
CCAAGGTCAGATACCCCTGCTGTTGCAGTGTATCCTTGGGCATAATGAGG
CTCTGTACATACATGTTCCGTCCTTTATCTATGAATTGGTGTTTGCGTTC
CAGAACGAGGCAGAACAGAGACTCGCTGCCTCGCTCGACATATATACCCA
CTGGCTGCTCATAACATTAGGCCCTTTCTAGTCATTCCGGATTTTTGCCG
GGAAACAGAGAACCATTCCCGGGAAACAGAACTGAGTTTCGCTCTGTTCT
AAACGATTGGGCTAGTAATTTTTTTCAAAATGCCTTTTCTCTGTTTTTTG
TTCTGAGGCCCGAGCTTCTTCCCGCCGACAGCAGTCACGCCGCATCCGAA
CTCTAGACGCCAAGCGAAGCACAGCAGTAGTTGTCGTGCGAAGTCCACAC
CATGGATGTAGGTATGGGAATGAGCCACCCCTGACGCCACGACGCTCGCG
ACAACGACCATGGCAGTCATGGCAGTCATGATCGTCGCCCTCTGCTGCTG
CTGCTGCCGCTGCTGCTGTGCTGCTGCTGTTGTTGTGTGTATCGGCGCCT
GATTCGACTCGAGGACTGCAGCCGTCCGGAAGGCTCTTGGCGCTTCCTCC
CATCAGCCATGGCCTTAGGGCGACCCTGTGAACTCACTGTGTGGTTGTGT
GGCCTGGGGATGGCGTGCGTACGACAGCTCGTGTGAACTGAGTACCTATC
TACGCAGGCGTGCCCGAACTTGGAGGCACGTCTGCCCGAAATGCGGGTTC
AAATTTCCCGGAACCCTGAAATGAGTATTTCGGGATTTTATGGCCAGCGC
TCATTTCAGGGAAAACGAGAAGAACGCCTGCACATTGTCGGAGATTTTCG
GTTTCCAGCAATGGTTCTCTGTTTCCGGCAAAAATTCGGAATGATTAGAA
AGGGCCTTACCAACTGAACCACCGGGGCGACCTGTATGTGCAAGTATATT
CACATTGGATGACGTGGAACTCGAGGCAGGCATATGTTACGGGCGGTCCA
TAGGGGACGTCCGCTCTTGTATTTTGTATCGTCCAGGTAGGGTGTTGTAC
GGTCTGTGTGGCCCCTTTCGGGTGCGCGAGATGCCCACCAAGGGTCAGTG
ATATGAAGTGATATGAATTGATGAGAAACCTTGAGCACATTTGGAAACTG
AGCCAAAGCATTACCGAAGCTTGAGCACACACACGGAGATCAGAGGGCTA
AACTTGTGCACACACTTGCACGCACGCGTGGTTCACTCCGGACAGCACTC
TATCGAACTCGGCAGGAAGGGGAACACACGCTCTCGCAAAGGTCTGATAC
GTATTCCTCTTTATACGTGCGGTTTATCACACACTCGCTGCCAGCAACGC
TGCCAGCTGAACACTCGGCCTTATGGAGGATGCTGTGTGTGTGGTCTCCC
CACCTGTTATATGGTGTCCAATCCGAGAATCGAACTCGGGTTTCCACAGA
GCGAGAGTGCATGGCTATTCTGTGGGCAGTCGACCACTTCAAGCCATATT
TGGCTGGGAGAGCGTTCAGGTTGGTGACGGATTGCTCAGCGTTGACGTGG
TTATTTCGGAGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig82:7823..11734+

>mRNA_P-littoralis_Contig82.4.1 ID=mRNA_P-littoralis_Contig82.4.1|Name=mRNA_P-littoralis_Contig82.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig82:7823..11734+ (Pylaiella littoralis U1_48)
CGTTTGCGTCGAAGCGTTTCGGCAGGCCCTCCACGACAAAACCGAACCTC
CTGCTTGGGCAATGAAGCTGGCGCTGCCCGAACCGGAATCGAACGCGGCA
TCTCTTTCAGCTGCAGTAGCTCAGCAACGCTGCCAGCTGAACACTCGGCC
TTATGGAGGATGCTGTGTGTGTGGTCTCCCCACCTGTTATATGGTGTCCA
ATCCGAGAATCGAACTCGGGTTTCCACAGAGCGAGAGTGCATGGCTATTC
TGTGGGCAGTCGACCACTTCAAGCCATATTTGGCTGGGAGAGCGTTCAGG
TTGGTGACGGATTGCTCAGCGTTGACGTGGTTATTTCGGAGT
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