mRNA_P-littoralis_Contig82.73.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig82.73.1
Unique NamemRNA_P-littoralis_Contig82.73.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig82.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig82contigP-littoralis_Contig82:369734..370667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size217
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791672.3953795-CDS-P-littoralis_Contig82:369733..3698841680791672.3953795-CDS-P-littoralis_Contig82:369733..369884Pylaiella littoralis U1_48CDSP-littoralis_Contig82 369734..369884 +
1680791672.41116-CDS-P-littoralis_Contig82:370601..3706661680791672.41116-CDS-P-littoralis_Contig82:370601..370666Pylaiella littoralis U1_48CDSP-littoralis_Contig82 370602..370666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig82.73.1prot_P-littoralis_Contig82.73.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig82 369734..370666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig82.73.1

>prot_P-littoralis_Contig82.73.1 ID=prot_P-littoralis_Contig82.73.1|Name=mRNA_P-littoralis_Contig82.73.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp
TQFPSRKDAELAAFRWRTSWEEGRKGDLADEPQHDSHTEETSASSLVLPQ
GKSLHSLGKLCAIQERAYKKQR
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mRNA from alignment at P-littoralis_Contig82:369734..370667+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig82.73.1 ID=mRNA_P-littoralis_Contig82.73.1|Name=mRNA_P-littoralis_Contig82.73.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=934bp|location=Sequence derived from alignment at P-littoralis_Contig82:369734..370667+ (Pylaiella littoralis U1_48)
ACACAGTTTCCTTCAAGGAAGGACGCGGAGCTGGCAGCCTTTCGGTGGCG
CACGAGTTGGGAAGAGGGTCGGAAGGGCGACCTGGCAGACGAACCACAGC
ATGACTCACACACTGAGGAGACATCAGCGTCGTCTCTAGTTTTACCTCAA
GGCAAGTGTACGTCCGCACCAGTACGTAGTCGACCGACCTGTACAATTGC
TTGAATTTGAAAATGTAATCGTACAGCAGTCTCACACGGGCAGGAATCCT
ATCCAGCAGCATGACAAGGGCACCTCGTTGCATGCCGGCCCCCCCACTAC
TGCTGTACGAACGCATCTCTGCTATACGTACATAGCTGCTGCTGCTGCAA
TGTGTTTCGCCTGCGCAGTGAGATAGTGTACGAGCTGCTTACGCACGCGT
ACATACTGAGAGTACCTGCTGGTCGAACCCGTATGGATTTTAGAGTGTAA
TCGTACAGCAGTCTCACACGGGCAGGAATCCTATCCAGCGGCATGACAAG
TGCACCTCGTTGCATGCCAGGCCCCCCACTACTGCTGTACGAACGCATCT
CTGCTGTAGCTGCTGCTGCTGCAATGTGTTTCGCCTGCGCAGTGAGATAG
TGTACGAGCTGCTTACGCACGCTTACATACTGAGAGTACCTGCCGGTTGA
ATCCGTTTGGATCTGAGAGTGTAATCGTACAGCAGTCTCACACGGGCAGG
AATCCTATCCAGCAGCATGACAAGTGTCCCTCGTAGATGTAAAGTCATCA
CTGCTGTGCAAATGTATCTCAGCTGTGGCGATGTCTGAGAATCAGCGAAT
GCTTGAGCAAAAGCACCCTTTTGCTGATTTCCTCCTTACTTTCACAACAA
CCGCAACATGACCAACAGGTAAATCTTTGCACAGCTTGGGCAAGCTGTGC
GCTATCCAGGAGAGAGCGTACAAGAAGCAGCGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig82:369734..370667+

>mRNA_P-littoralis_Contig82.73.1 ID=mRNA_P-littoralis_Contig82.73.1|Name=mRNA_P-littoralis_Contig82.73.1|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig82:369734..370667+ (Pylaiella littoralis U1_48)
ACACAGTTTCCTTCAAGGAAGGACGCGGAGCTGGCAGCCTTTCGGTGGCG
CACGAGTTGGGAAGAGGGTCGGAAGGGCGACCTGGCAGACGAACCACAGC
ATGACTCACACACTGAGGAGACATCAGCGTCGTCTCTAGTTTTACCTCAA
GGTAAATCTTTGCACAGCTTGGGCAAGCTGTGCGCTATCCAGGAGAGAGC
GTACAAGAAGCAGCGC
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