mRNA_P-littoralis_Contig819.22.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig819.22.3
Unique NamemRNA_P-littoralis_Contig819.22.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig819.22.3 vs. uniprot
Match: A0A6H5JSI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI9_9PHAE)

HSP 1 Score: 269 bits (687), Expect = 4.120e-87
Identity = 144/250 (57.60%), Postives = 182/250 (72.80%), Query Frame = 1 
Query:    1 GTAATLERHELRVGTSRFLSQDFFLAYRIVLALYFLFWSIFWRGVKDYSTGRYLTHWTWYVATGYAVVSTWSAFLCWRATRTAGTLAPDGPVQGRASLSSTAASPDQSQATTPSRPLLPVALRRLQLALRSAACLVSLIVVAVFWGALYGGEDLTTVDVHAHVIIGIVMLIDQFLIADEYKVRYVIFAQAFGLIYLVFSIGWYYIAPKEDRLLYSVLDWGNETLVACIYAVLCMLVLAPLFALLHFGVYR 750
            G    L+    R+GTSRFL Q  F+ Y++ LA+YFL+W+IFWR VKDY+TGR+LTHWTWY  T Y VVS  SAFLCWRA   A T+A  GPV+          S   S  T   +P+ P ALR LQLAL S AC+VSLIVV++FWGALY G+ LTTVD  AHV +  +ML+DQFL+ADE+K+RYV+F QAFG+IY+ F++GWYY+AP +DRL+Y +LDW + TL ACIYA   +LV APLF L+HFG++R
Sbjct:    6 GGTVPLDDETPRIGTSRFLPQGMFVLYKLGLAVYFLYWAIFWRAVKDYNTGRFLTHWTWYATTTYFVVSALSAFLCWRAI--AVTVA-SGPVRDGDPAFDAPTSSRPSDRTGSPQPV-PAALRHLQLALWSTACIVSLIVVSIFWGALYDGDKLTTVDEQAHVFVACIMLLDQFLVADEFKLRYVLFPQAFGVIYIFFNVGWYYLAPDDDRLIYIILDWEDNTLGACIYAFGAILVGAPLFGLVHFGIFR 251
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BLAST of mRNA_P-littoralis_Contig819.22.3 vs. uniprot
Match: D7G734_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G734_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 8.420e-36
Identity = 70/133 (52.63%), Postives = 91/133 (68.42%), Query Frame = 1 
Query:  352 LPVALRRLQLALRSAACLVSLIVVAVFWGALYGGEDLTTVDVHAHVIIGIVMLIDQFLIADEYKVRYVIFAQAFGLIYLVFSIGWYYIAPKEDRLLYSVLDWGNETLVACIYAVLCMLVLAPLFALLHFGVYR 750
            +P  LR LQL L S AC+ SLIVV +FWGAL                     L+DQFL+ADE+K+RY++F QAFG+IYL F++GWYY+AP +DRL+Y +LDW + TL ACIYA   +LV APLF L+H G++R
Sbjct:   15 VPAVLRHLQLVLWSTACIGSLIVVTIFWGAL---------------------LLDQFLVADEFKLRYILFPQAFGVIYLFFNVGWYYLAPDDDRLIYIILDWEDNTLGACIYAFGAILVGAPLFGLVHLGLFR 126
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BLAST of mRNA_P-littoralis_Contig819.22.3 vs. uniprot
Match: A0A6H5JMZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ5_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 8.580e-35
Identity = 82/241 (34.02%), Postives = 143/241 (59.34%), Query Frame = 1 
Query:   31 LRVGTSRFLSQDFFLAYRIVLALYFLFWSIFWRGVKDYSTG-RYLTHWTWYVATGYAVVSTWSAFLCWRATRTAGTLAPDGPVQGRASLSSTAASPDQSQATTPSRPLLPVALRRLQLALRSAACLVSLIVVAVFWGALYGGEDLTTVDVHAHVIIGIVMLIDQFLIADEYKVRYVIFAQAFGLIYLVFSIGWYYIAPKEDRLLYSVLDWGNETLVACIYAVLCMLVLAPLFALLHFGVYR 750
            +R  TSRFLSQ  FL Y+++  +YF+FW  FW   +D     +++T+W WY+A  Y +VST +A+     +     +A DGPV+G  +++    + +Q  ++         AL   Q+   + AC+ SL++V VFW AL+    LT+ DV+AH++I  VM IDQ L+A +++ + ++ +  F ++Y+ F+I ++  AP+++R++Y  +DWG     +  +A +   VL PL  L+H+ V+R
Sbjct:   19 VRAVTSRFLSQRSFLCYKVIATIYFVFWCYFWPFGEDIDDAHKFVTYWGWYMAAIYFLVSTATAY-----SFLGSPMASDGPVRGTHAVAPHRGNRNQPLSSNRR------ALLGFQVFSWNVACVGSLVIVTVFWVALFDNTPLTSTDVNAHILIAPVMAIDQLLVATKFERKQMLASFLFSIVYVAFNIVFFLTAPEDERVIYGQMDWGESVGNSAAFAAVVTFVLVPLGGLIHYCVFR 248
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BLAST of mRNA_P-littoralis_Contig819.22.3 vs. uniprot
Match: A0A6H5JVA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVA0_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.490e-20
Identity = 58/140 (41.43%), Postives = 85/140 (60.71%), Query Frame = 1 
Query:  343 RPLLPVALRRLQLALRSAACLVSLIVVAVFWGALYGGE---DLTTVDVHAHVIIGIVMLIDQFLIADEYKVRYVIFAQAFGLIYLVFSIGWYYIAPKEDRLLYS-VLDWGNETLVACIYAVLCMLVLAPLFALLHFGVYR 750
            +P +P  LR LQL L + AC+ SL+V  V+    Y  +    +   DV AH ++   ML+DQ LIAD YK+ ++IF Q +GL+YL FS+ W+Y  P++++ LY   LDW    L AC+   + + VL P+  LLH GV+R
Sbjct:   90 QPPVPRGLRWLQLVLWNIACIASLLVTFVWATEDYVRQVRQGVKNFDVQAHGLVAFFMLVDQLLIADTYKLGHMIFTQIYGLVYLAFSVVWFYNGPEDEKYLYEDTLDWDENRLQACLSGGVAVGVLVPIAGLLHLGVFR 229
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BLAST of mRNA_P-littoralis_Contig819.22.3 vs. uniprot
Match: D7FX10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX10_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 2.760e-20
Identity = 57/140 (40.71%), Postives = 84/140 (60.00%), Query Frame = 1 
Query:  343 RPLLPVALRRLQLALRSAACLVSLIVVAVFWGALYGGE---DLTTVDVHAHVIIGIVMLIDQFLIADEYKVRYVIFAQAFGLIYLVFSIGWYYIAPKEDRLLYS-VLDWGNETLVACIYAVLCMLVLAPLFALLHFGVYR 750
            +P +P  LR LQL L + AC+ SL+V  V+    Y  +        DV AH ++   ML+DQ LIAD +K+ ++IF Q +GL+YL FS+ W+Y  P++++ LY   LDWG   L AC+   + + VL P+  LLH  V+R
Sbjct:    8 QPPVPRGLRWLQLVLWNIACIASLLVTFVWASEDYVRQVRQGTKNFDVQAHGLVAFFMLVDQLLIADTFKLGHMIFTQIYGLVYLAFSVIWFYKGPEDEKYLYEDTLDWGENRLQACLSGGVAVGVLVPIAGLLHLVVFR 147
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BLAST of mRNA_P-littoralis_Contig819.22.3 vs. uniprot
Match: D7G735_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G735_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 4.350e-19
Identity = 43/120 (35.83%), Postives = 80/120 (66.67%), Query Frame = 1 
Query:  391 SAACLVSLIVVAVFWGALYGGEDLTTVDVHAHVIIGIVMLIDQFLIADEYKVRYVIFAQAFGLIYLVFSIGWYYIAPKEDRLLYSVLDWGNETLVACIYAVLCMLVLAPLFALLHFGVYR 750
            + AC+ SL++V VFW AL+    LT+ DV+AH++I  +M IDQ L+A +++ + ++ + +F ++Y+ F+I ++  AP+++R++Y  +DWG     +  +A +   VL PL  L+H+ V+R
Sbjct:   40 NVACVGSLVIVTVFWVALFDNTPLTSTDVNAHILIAPIMAIDQLLVATKFERKQMLASFSFSIVYVAFNIIFFLTAPEDERVIYGQMDWGESVGNSAAFAAVVAFVLVPLGGLIHYCVFR 159
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig819.22.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JSI9_9PHAE4.120e-8757.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G734_ECTSI8.420e-3652.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMZ5_9PHAE8.580e-3534.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVA0_9PHAE1.490e-2041.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX10_ECTSI2.760e-2040.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G735_ECTSI4.350e-1935.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig819contigP-littoralis_Contig819:94559..97015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog400682.PAC_15726756
Model size753
Max annot lvl33208|Metazoa
Hectar predicted targeting categorysignal anchor
GOsGO:0000768,GO:0005575,GO:0006949,GO:0007520,GO:0008150,GO:0009653,GO:0009987,GO:0014902,GO:0016020,GO:0030154,GO:0032502,GO:0042692,GO:0048646,GO:0048856,GO:0048869,GO:0051146,GO:0061061
Exons4
Evalue6.61e-06
EggNOG OGs2BZ8C@1|root,2S8CX@2759|Eukaryota,3A92Y@33154|Opisthokonta,3BTZA@33208|Metazoa
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_011200.1
DescriptionProtein rolling stone-like
Cds size753
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791672.1951556-CDS-P-littoralis_Contig819:94558..948041680791672.1951556-CDS-P-littoralis_Contig819:94558..94804Pylaiella littoralis U1_48CDSP-littoralis_Contig819 94559..94804 -
1680791672.2106547-CDS-P-littoralis_Contig819:95528..955911680791672.2106547-CDS-P-littoralis_Contig819:95528..95591Pylaiella littoralis U1_48CDSP-littoralis_Contig819 95529..95591 -
1680791672.222256-CDS-P-littoralis_Contig819:96150..964331680791672.222256-CDS-P-littoralis_Contig819:96150..96433Pylaiella littoralis U1_48CDSP-littoralis_Contig819 96151..96433 -
1680791672.2324007-CDS-P-littoralis_Contig819:96854..970151680791672.2324007-CDS-P-littoralis_Contig819:96854..97015Pylaiella littoralis U1_48CDSP-littoralis_Contig819 96855..97015 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig819.22.3prot_P-littoralis_Contig819.22.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig819 94559..97015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig819.22.3

>prot_P-littoralis_Contig819.22.3 ID=prot_P-littoralis_Contig819.22.3|Name=mRNA_P-littoralis_Contig819.22.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=251bp
GTAATLERHELRVGTSRFLSQDFFLAYRIVLALYFLFWSIFWRGVKDYST
GRYLTHWTWYVATGYAVVSTWSAFLCWRATRTAGTLAPDGPVQGRASLSS
TAASPDQSQATTPSRPLLPVALRRLQLALRSAACLVSLIVVAVFWGALYG
GEDLTTVDVHAHVIIGIVMLIDQFLIADEYKVRYVIFAQAFGLIYLVFSI
GWYYIAPKEDRLLYSVLDWGNETLVACIYAVLCMLVLAPLFALLHFGVYR
*
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mRNA from alignment at P-littoralis_Contig819:94559..97015-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig819.22.3 ID=mRNA_P-littoralis_Contig819.22.3|Name=mRNA_P-littoralis_Contig819.22.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=2457bp|location=Sequence derived from alignment at P-littoralis_Contig819:94559..97015- (Pylaiella littoralis U1_48)
GGCACAGCCGCCACCCTCGAAAGGCACGAGCTACGTGTGGGCACATCGCG
CTTCCTCTCGCAAGATTTTTTCCTGGCGTACAGAATAGTGCTGGCTCTTT
ACTTCCTGTTCTGGTCTATTTTTTGGCGTGGGGTGAAGGACTACAGCACT
GGACGCTACTTGTGAGTCTGCAGTAGCGATTCGACGAACAAGGGATGGGT
CTTCCCTCATACCTTGTCATCGTGTGCCGGTTTGTCCGGACTGGCAGAAG
TCGAGGTACTTTCGGGAACATGATACGGGCGCAAAATGCCCTGTTTTCTC
ACACACGCTGATATTGTACTTGCTTCTAGATGCAGACGCAGTGTGTCCGG
AAATTCCGCTGTAATATCATCAGTTTCAAGAAAGATCGGAAAGCGTCTAT
TGGCCGCTAATGATCCGATTGCCTATAATACGTTTCTGCTGTCCGTATAT
TATGTGTATGTATGAAGGGACAGAAATGTGTGCAATGGCGAAGATATGAG
AAGAGGGAGGGGACCAATAACGGGAAACGACAGGGGGAACACGAGAAACC
CACCAACACCCAACCATTACAACCAACGCCAGGACACATTGGACCTGGTA
TGTCGCGACCGGTTACGCCGTTGTTTCGACGTGGTCGGCGTTCCTGTGCT
GGAGAGCGACGAGGACAGCCGGGACACTAGCGCCAGATGGGCCAGTGCAA
GGAAGGGCATCATTATCGTCCACAGCAGCATCGCCTGACCAATCCCAGGC
CACCACACCTTCCCGGCCGCTCTTGCCAGTGGCGCTGAGACGGCTGCAGC
TTGCGCTCCGGAGTGCGGCGTGTCTGGTCTCTCTGATCGTTGTCGCAGTA
TTTTGGGGGGCGCTGGTGAGACACGCGACCAGTGTTGCTGGTGTGTTGAT
ATTTATTCCGCTACATGCAGCAGGTCACACAGAGGTGATGATTGCTGAAG
CTCCTTGGCACGCGGAGAAAAAAGCGTGAGGCAAGCCCGACGACCGTACG
TTGTGGTCGCGCACAAATCTGGTGCCTTATGAAGTTATCATGTTATATGC
AAAAACCGACTGTGAGGAAGAGAACCCTCTCGCCGCTCGCCGCACGATTT
GCCTGGCGGGTGGCCGGTAAGAATCCAGATGCCGCCCTTCACTTGATACG
ACGTCAAAGTAGGAAAGACGAACAGTGGTTACTGGAGACAAAATGCAGAC
CAGACTGTACCGTACATGCCAAGGGCGCGCGAATTGTCGGAGTTTTAAAA
TTGATATTAATGCCGCGTAGGCAGCAAATAAGCTCAACTTTCAACACTCA
GTTGTTTTGCCAAGCCAGTTGTAGGCACTGCTATGATGGCAGGCGAGCAC
TAGCCATTCACACGAAATGCTCACCCCCTATGGTCCTCTGTGGTGACTCC
CGTGCGTGTTTTCTACATATCCAGTACGGTGGAGAAGACCTTACCACTGT
CGACGTCCACGCGCACGTCATTATCGGCATTGTCATGGTGAGCATCACTC
GTCGGTCCAGACCAGTTTTCGAGGTGTCTTGTACGGATAATTTGGTATTC
ATCAAGCGTCGAACATGTACAAATTATCGTAGGGTTAGCGCTGTCGACAC
ATGGATGGTTCTTGAAGGTATTGTTTTTTCAGTCCGGTCGTCCAGATGGT
TCAGCTGTGATGTTCTCGAAACCTCATGACAGCTAGTTCTTGAGTTTGAC
TCTCGGTGAACTGTTTTTTTCTCTCATCATATATAGTACCAGGTAGTGGA
CAGCGATAACTTGGTGAGTAACAATGTTCGCCTCGAAAACCCACGAGGCA
AAAGGATGGCCGTACATTTCTCGCAATAAATGTTGAAGCAAGCACCGCAA
AGGGAGGGTGGAGAAACAATAACTCCCGTGCTGACCTTCCTCCTGTGACC
CCGGCTGATGCGCCCACACACCCCAGAAGGTATAGACTGGCGTATAGAGT
AGATGGAATGACAACACACACATCGATTGATGACATCTCATTAACGGTCT
GCTCCAAATTCCTGTTGCAACAATCGGTTGATATCGTCGATTACTCCACG
CCGTCGGGAACACTTTTATCTGTTCGTGCTTCTCACATACTCCGGAGTAA
CATATTTTCGCTTCTTGTTGTTCGAGTTCTCACGCCACGTTCAGTCAGGG
CTACGATGTGAATGGCTTTTCCCGCTTCCCCTCTCCGCGTCTGCGGGCGT
CTACCATCCAGCTGATCGACCAGTTTCTAATTGCAGACGAGTACAAGGTG
CGGTATGTCATCTTCGCACAGGCGTTCGGGTTGATTTACCTTGTCTTCAG
CATCGGCTGGTACTACATTGCACCGAAAGAGGACCGGCTGCTATACTCCG
TCCTCGACTGGGGCAATGAAACGCTGGTGGCGTGCATTTACGCAGTCTTG
TGTATGCTGGTCCTGGCGCCGCTGTTTGCGCTGCTTCACTTCGGCGTTTA
CAGGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig819:94559..97015-

>mRNA_P-littoralis_Contig819.22.3 ID=mRNA_P-littoralis_Contig819.22.3|Name=mRNA_P-littoralis_Contig819.22.3|organism=Pylaiella littoralis U1_48|type=CDS|length=753bp|location=Sequence derived from alignment at P-littoralis_Contig819:94559..97015- (Pylaiella littoralis U1_48)
GGCACAGCCGCCACCCTCGAAAGGCACGAGCTACGTGTGGGCACATCGCG
CTTCCTCTCGCAAGATTTTTTCCTGGCGTACAGAATAGTGCTGGCTCTTT
ACTTCCTGTTCTGGTCTATTTTTTGGCGTGGGGTGAAGGACTACAGCACT
GGACGCTACTTGACACATTGGACCTGGTATGTCGCGACCGGTTACGCCGT
TGTTTCGACGTGGTCGGCGTTCCTGTGCTGGAGAGCGACGAGGACAGCCG
GGACACTAGCGCCAGATGGGCCAGTGCAAGGAAGGGCATCATTATCGTCC
ACAGCAGCATCGCCTGACCAATCCCAGGCCACCACACCTTCCCGGCCGCT
CTTGCCAGTGGCGCTGAGACGGCTGCAGCTTGCGCTCCGGAGTGCGGCGT
GTCTGGTCTCTCTGATCGTTGTCGCAGTATTTTGGGGGGCGCTGTACGGT
GGAGAAGACCTTACCACTGTCGACGTCCACGCGCACGTCATTATCGGCAT
TGTCATGCTGATCGACCAGTTTCTAATTGCAGACGAGTACAAGGTGCGGT
ATGTCATCTTCGCACAGGCGTTCGGGTTGATTTACCTTGTCTTCAGCATC
GGCTGGTACTACATTGCACCGAAAGAGGACCGGCTGCTATACTCCGTCCT
CGACTGGGGCAATGAAACGCTGGTGGCGTGCATTTACGCAGTCTTGTGTA
TGCTGGTCCTGGCGCCGCTGTTTGCGCTGCTTCACTTCGGCGTTTACAGG
TAA
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