mRNA_P-littoralis_Contig819.18.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig819.18.1 vs. uniprot
Match: D7G732_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G732_ECTSI) HSP 1 Score: 1776 bits (4599), Expect = 0.000e+0 Identity = 1052/1571 (66.96%), Postives = 1195/1571 (76.07%), Query Frame = 1
Query: 25 AILWQSVLLVSRAVVEADTCDLESVTAPVSLRDSTGWDSQDPIG-AGERRQGHISAEVEAWGQEHVVVYGGTNTRTDDVNDVTGRGSEVSILDISSQGSWVELEMVAYDGRPPPLFRPASFVWDNSVFLVGGHTDEPFTVTNKIWRADIQGFDEAPEGLWRPVNATTNDSLGGLVV-VPRYGHTATVLNTGEENPTESWAVVIGGMSGSQDSLDNDLILHLHESTEEFVCEDEDLNITTSTYTCAQRTPTRPTETYGEWWLLDPRLATNSSKPGARSFQATASLASNGLGSTSCLYMYGGRDYERSILFSDLWSLCPVSNFLGGSGETTFTWTELSPEGTLPMGRYGATFVSGVKDAPYRILLYGGTGRYPNSYMDDDFTQEYDTYMNAWVESSLEDGSSDFPVGRRDHTMEGAGDFFVLIAGIDNNDEALQDMWNVNYSSD---------------------CPAGTSTT-------------------------------NGVGTSSESGCLSCEAGT----------------------YSLEGALVXXXXXXXXXXXXXXXXXXXXXXXKYRLQDSALGSCYDXXXXTYAPFEQTITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGV----GEESDXXXXXXXX-EFAGVGASSCRECVAGQYNEETGAETCELCPLGTYVAVPGERCSASAEAXXXXXQGSTTVAAGSNSTEXXXXXXXXXXXVALADGGGCEECPRGEYTSTNEEAQDMECIGCVGGFYADTIGSDVCTECPEEQLSYSAHAVCLACITNTSCPLGPNGETCSGVGNCYLGVCECDTGFYNVDCSSGTDSGFGGVFGFDHESVEVGTAESGGTVSLTLVRLVGTDGSVTVDLDVTGGNATATSDYGGTWPTQVVFADGQTESVVSLPIVHDNDPDEGCEFVEVGVTAVSGTGSAVLDGGIHDVSAEAVVLIEEDDFTSAVRTAVPPEGLNAGGGGLSLATAEVVIADAAATWPSNVTLSVVGKAPVNRSLALPMDVLFLTESDTAVAADLQRLADLMPGLVAEMQSTYPSVMFGVASFTTTASSYDYEVLEQLMLNVYPLVTALDGLAASP-AVSEGPPGAQVAALYQAADDGTNEVGWRDGGDGDAFRVAVVVTGSSFADAAGFDSSGTSTWTIPHNVTVSELRSRLSSTGVHPVFLLTNPSLEDEYRALVGEIGFGAVVALNLADAIASNYNDDYLPGAMTDGLEALFAQAAVLVQSDEGGFVASISPAADAFRNRTLGDEVNFLVNMSATPASAAGSGGVTLSFQGHKAVITVVREFTSCAAISRSRVSGAAAAASDDARAGWLQGFHSDEATKWTFYSAFSVGNESAGPFGVPANVLTVSCPGGCSDQEAYQDVAMAVDSELPMVVKAYFYLSATSTATAASVTLDTTYSSG----EIDESFGFLDFGASSGDGVSGTWTQGIAAVYPVQVVTSARVRLSFSGTGEAAFAGVALFAHPDVACRCEAGYYLDVGSAPALACEPQPDCTYFEGW---CTYCPAGYKCPQ 4470
A LW LL + ++A CD E+VT PVSLRD TGWDSQD IG AG+RRQGH+SAEV AW Q+H VV+GGT+ RTDDVNDV GR + V ++DI++ +W ELEMVAYDG P +FRPASFVWDNS+F+V GHT+EPFTVT +IWRADIQGF+EAPEGLWRP+NA+ D+LGG V +PRYGHTATVLNTGE NPTE+WA+VIGGM+GSQ+S+D +LILHL ES++EFVC+++ L TS+YTC QRTPTRPTET GEW LD RL+ N SKP +RS+ A ASLASNGLG ++CLYMYGGR+YE SIL+SDLWSLCPVSN+LG S +TTFTWTELSP GTLP+GRYGA FV+G+KDAP+RILLYGGTGRYPNSYM D+FT+EYDTYMNAWV+SSLEDGSS +PVGRRDHT+EG GDF VLIAGI+N++EALQDMWNVN+SS CP GT+T NG G E+ +SL GAL XXXXXXXXXXXXXXXXXXXXXX R +DS LG C D TYAPFEQT XXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXX G SD FAGVG+SS VAGQY+ G+ETC+LCP+GTYV V G S S XXXXX XXXXXXXXXXX +GGGC++CPRGEYTST E AQ+M C CVGGF+ADTIGSD+CTECPEEQLSYSAH CLACITNTSCP+GPNGETCSGVG+CYLGVC+C TGF +VDCSSGT G GGVFGFD++S VGTAESGGTVSLTLVRLVGTDG VTVDLDVTGGNAT SD+GGTWP QVVF DGQTES VSLP+VHDNDPDEGCE V +GVTAVSGTGSAV++GGIHDVSAEAVV IEEDDFTSAVR+ P GL GGG LS ATAEVVIADA ATW S+VTLSVVG P NRS ALP+DVLFL ES + VA DL+RL +L+PGLVAEMQS+Y SVM G+A+FTTTASSYD++VL Q+MLN+YP+V ALD LA S A SE PGAQV LY+AADD TN+VGWR DGD+FR+A VVTGS FA+ AGFD+S T TWT+P+ VTVSEL+SRLSS GVHP+FLLT+ SLED Y ALV EIGFGAVVA++ DA+A+NYN+DYLP A+ GLEALF+QAA+LVQSD+GGFVAS +P DAFR+ G EV F V+MSAT AS GSG V LSFQGHK VITV+RE++SCAA SRSRV+GAAAA +D+ARAGWLQ FH+DE +KWTF S FS+GNE+ GPFGV A+VL VSCPGGCSDQEAYQD+ +AVDSELPMVVKAYFYLSA STAT ASV+LD TYSSG E+ ESFGFLDF ASS SGTWTQ I AVYP +V+TSARV++SFSGTGEAAF GVALFAHPDVACRCEAGYYLDV SAP D Y G C CP G+ C Q
Sbjct: 9 AALWVLALLEPQVGIDAAVCDGETVTDPVSLRDPTGWDSQDSIGGAGQRRQGHVSAEVTAWDQKHAVVFGGTSVRTDDVNDVVGREAGVFVVDITNPANWTELEMVAYDGAPHAVFRPASFVWDNSLFVVCGHTEEPFTVTTEIWRADIQGFEEAPEGLWRPINASKTDALGGQVYDIPRYGHTATVLNTGEANPTEAWAIVIGGMTGSQNSVDTNLILHLSESSDEFVCDEDALVNITSSYTCGQRTPTRPTETEGEWLYLDSRLS-NDSKPASRSYHAVASLASNGLGGSACLYMYGGRNYEMSILYSDLWSLCPVSNYLGNSEDTTFTWTELSPAGTLPLGRYGAVFVAGIKDAPHRILLYGGTGRYPNSYMADEFTKEYDTYMNAWVDSSLEDGSSTYPVGRRDHTLEGVGDFLVLIAGINNDEEALQDMWNVNFSSPMCSSGNYMFFCESTSSPVCGVCPDGTATDRASYXXXXXXXXXXXXXXXXXXXXXXXXKYGNGDGGVVEATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSLTGALECXXXXXXXXXXXXXXXXXXXXXXXXRQEDSTLGYCSDCAAGTYAPFEQTTACLXXXXXXXXXXXXXXXXXXXXAGTAGASVASGPLADXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADGASSDGACQTCLSGTFAGVGSSSXXXXVAGQYSTLDGSETCDLCPVGTYVDVTG---SMSIGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGGGCQDCPRGEYTSTYEAAQEMNCTKCVGGFFADTIGSDLCTECPEEQLSYSAHETCLACITNTSCPIGPNGETCSGVGDCYLGVCDCSTGFDSVDCSSGTCDGCGGVFGFDYDSAVVGTAESGGTVSLTLVRLVGTDGEVTVDLDVTGGNATEVSDFGGTWPIQVVFDDGQTESAVSLPVVHDNDPDEGCEGVTIGVTAVSGTGSAVVNGGIHDVSAEAVVTIEEDDFTSAVRSTTLPTGLGVGGGELSPATAEVVIADATATWSSDVTLSVVGVTPTNRSTALPLDVLFLAESHSTVATDLERLVELLPGLVAEMQSSYSSVMLGLAAFTTTASSYDFQVLAQMMLNLYPVVVALDTLATSSLAASESAPGAQVVGLYEAADDATNDVGWRGDEDGDSFRIAAVVTGSHFAEEAGFDTSDTGTWTVPNGVTVSELQSRLSSAGVHPIFLLTDSSLEDAYTALVDEIGFGAVVAVDETDAVANNYNEDYLPRALAGGLEALFSQAALLVQSDDGGFVASTTPEPDAFRSVAAGTEVTFAVDMSATVASDTGSGEVILSFQGHKTVITVLREYSSCAATSRSRVTGAAAATADNARAGWLQRFHTDEPSKWTFDSGFSLGNETLGPFGVSADVLAVSCPGGCSDQEAYQDITVAVDSELPMVVKAYFYLSALSTATVASVSLDVTYSSGGQSVEV-ESFGFLDFVASSA--TSGTWTQDIEAVYPTKVITSARVKISFSGTGEAAFTGVALFAHPDVACRCEAGYYLDVASAPGGVLTACLDGEYSMGGYIECLPCPVGWLCSQ 1572
BLAST of mRNA_P-littoralis_Contig819.18.1 vs. uniprot
Match: UPI001E558517 (hypothetical protein n=1 Tax=Methylobacterium sp. Leaf118 TaxID=2876562 RepID=UPI001E558517) HSP 1 Score: 72.0 bits (175), Expect = 9.790e-9 Identity = 68/216 (31.48%), Postives = 103/216 (47.69%), Query Frame = 1
Query: 2926 SLALPMDVLFLTESDTAVAADLQRLADLMPGLVAEMQSTYPSVMFGVASFTT-------TASSYDYEVLEQLMLNVYPLVTALDGLAASPAVSEGPPGAQVAALYQAADDGTNEVGWRDGGDGDAFRVAVVVTGSSFADAAGFDSSGTSTWTIPHN--------------VTVSELRSRLSSTGVHPVFLLTNPSLEDEYRALVGEIGFGAVVALN 3510
S+ LP+D + L + + + D+ L +L+P LVAE++S P V FGVASF + Y Y+ L + A+DGL +GP +Q+ AL Q A +E+G+R G A R V+ T + A F S+G P+N +V ++R+ L G+ P+F +T + Y ALV E+GFG VV L+
Sbjct: 432 SVTLPLDFVLLQDLSGSFSEDVATLQELVPDLVAELESLQPDVRFGVASFVDKPTDPFGASGDYVYQTDLALTADASAFQAAVDGLVVRNG-GDGPE-SQIEALMQLALR-PSELGFRAG----ALRAVVLTTDAPPHVAGDFASAG------PNNGDDVLDGGGLGEDYPSVDQVRAALLDGGIVPIFAVT-ADMVATYEALVAELGFGTVVTLS 633 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig819.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig819.18.1 >prot_P-littoralis_Contig819.18.1 ID=prot_P-littoralis_Contig819.18.1|Name=mRNA_P-littoralis_Contig819.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1491bp MWLNVPIAAILWQSVLLVSRAVVEADTCDLESVTAPVSLRDSTGWDSQDPback to top mRNA from alignment at P-littoralis_Contig819:62401..78912+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig819.18.1 ID=mRNA_P-littoralis_Contig819.18.1|Name=mRNA_P-littoralis_Contig819.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=16512bp|location=Sequence derived from alignment at P-littoralis_Contig819:62401..78912+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig819:62401..78912+ >mRNA_P-littoralis_Contig819.18.1 ID=mRNA_P-littoralis_Contig819.18.1|Name=mRNA_P-littoralis_Contig819.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=4473bp|location=Sequence derived from alignment at P-littoralis_Contig819:62401..78912+ (Pylaiella littoralis U1_48)back to top |