mRNA_P-littoralis_Contig819.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig819.17.1
Unique NamemRNA_P-littoralis_Contig819.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig819.17.1 vs. uniprot
Match: D7G731_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G731_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 3.100e-27
Identity = 66/86 (76.74%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:    4 RVCKRADARGKEAESLRQRVQELEPEVRRLAKELEIRRQREASRSPLGRRKQPPPTSTALSEGDVALRGRLAASDNRARILQLRCD 261
            R  KRADARGKEA+SLRQRVQELEPEVR+LA ELE RRQREASRSPL  RKQ  P S  L E DV LR RLAA+D+RA+ILQLRCD
Sbjct:   31 RTRKRADARGKEADSLRQRVQELEPEVRKLANELEKRRQREASRSPLRGRKQHAPPSATLGEDDVVLRARLAAADSRAKILQLRCD 116
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig819.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G731_ECTSI3.100e-2776.74Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig819contigP-littoralis_Contig819:61727..61989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G731
PFAMsAnk_2
Model size263
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.07e-28
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size261
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791671.7486274-CDS-P-littoralis_Contig819:61728..619891680791671.7486274-CDS-P-littoralis_Contig819:61728..61989Pylaiella littoralis U1_48CDSP-littoralis_Contig819 61729..61989 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig819.17.1prot_P-littoralis_Contig819.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig819 61729..61989 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig819.17.1

>prot_P-littoralis_Contig819.17.1 ID=prot_P-littoralis_Contig819.17.1|Name=mRNA_P-littoralis_Contig819.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
VRVCKRADARGKEAESLRQRVQELEPEVRRLAKELEIRRQREASRSPLGR
RKQPPPTSTALSEGDVALRGRLAASDNRARILQLRCD
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mRNA from alignment at P-littoralis_Contig819:61727..61989-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig819.17.1 ID=mRNA_P-littoralis_Contig819.17.1|Name=mRNA_P-littoralis_Contig819.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=263bp|location=Sequence derived from alignment at P-littoralis_Contig819:61727..61989- (Pylaiella littoralis U1_48)
GTGAGGGTCTGCAAGAGGGCCGATGCGAGGGGAAAAGAGGCGGAATCACT
ACGCCAACGCGTGCAAGAGCTCGAGCCAGAGGTCCGTAGACTGGCTAAGG
AGCTCGAAATCAGGCGCCAGAGAGAAGCGTCGCGCAGCCCCCTCGGACGC
CGCAAGCAACCTCCTCCAACGAGCACGGCCCTCAGCGAGGGCGATGTCGC
TCTCCGTGGCCGACTGGCGGCATCAGACAACCGGGCTAGGATCTTGCAGT
TGCGGTGCGACCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig819:61727..61989-

>mRNA_P-littoralis_Contig819.17.1 ID=mRNA_P-littoralis_Contig819.17.1|Name=mRNA_P-littoralis_Contig819.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig819:61727..61989- (Pylaiella littoralis U1_48)
GTGAGGGTCTGCAAGAGGGCCGATGCGAGGGGAAAAGAGGCGGAATCACT
ACGCCAACGCGTGCAAGAGCTCGAGCCAGAGGTCCGTAGACTGGCTAAGG
AGCTCGAAATCAGGCGCCAGAGAGAAGCGTCGCGCAGCCCCCTCGGACGC
CGCAAGCAACCTCCTCCAACGAGCACGGCCCTCAGCGAGGGCGATGTCGC
TCTCCGTGGCCGACTGGCGGCATCAGACAACCGGGCTAGGATCTTGCAGT
TGCGGTGCGAC
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