mRNA_P-littoralis_Contig819.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig819.16.1
Unique NamemRNA_P-littoralis_Contig819.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig819.16.1 vs. uniprot
Match: D7G731_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G731_ECTSI)

HSP 1 Score: 465 bits (1196), Expect = 9.480e-158
Identity = 296/406 (72.91%), Postives = 330/406 (81.28%), Query Frame = 1 
Query:    1 RHRGRGKDSEARRIKRQLEVAERRVKNSLFINEAHQSLAEKATEREKEANARAAEVGRRLDRALEKLKAIERKGMIANLEASCRRDEEGIHLAQRELRAHQMDPELYLPVNTAKRRQLARSEQRLHRLQLRHESQAAALRQAQATERMHSDLRRAAGLGDITEMAKCLDFGISVNVPDQSGLSAFLYACGQANAELIRMLIDAGGDVLDGDGTITGLIIAARKGTLXXXXXXXXXXXXIDARDSAGGTALHAATLRRHVNXXXXXXXXXXXXXXXXXXXXXXXXMLASVSTG-DGSISDRTGDAG--LVALLLEWGASADVKNSKGLTPMSAALDTRNRATVLAYRAFFGEDSGLALT---LDVDVGSENSTPSSIHQEQTSRGQKATENGTTAGEPVRERKTINA 1200
            RHR   KD+EARRIKRQLEVAERRVKNS +INEAH+SLA KATEREKEANARAAE+GRRLDRALEKL++IERK MI NLE SC RDEE    A+RELRAHQMDPELYLPVNTAKRRQ+ARSE+RL RL+LRHESQ+AAL QAQATER+H+DLRRAAGLGDI +  KCLD GISVNVPDQSGLSAFLYACGQANAEL+++L+DAGGDVLDGDGTITGLIIAARKGT+            + ARDSAGGTALHAATL RHV+XXXXXXXXXXXXXXXXXXXXXXXXMLASVS+G DG    R G+ G  +  LLLEWGASAD+KNSKGLTP+SAALDTRNRA VLAYR FFGEDSGLA      DV+    ++TP++ +        K     T   +P RER T +A
Sbjct:  163 RHRALDKDNEARRIKRQLEVAERRVKNSFYINEAHESLAAKATEREKEANARAAELGRRLDRALEKLESIERKDMILNLETSCARDEEQTFFAERELRAHQMDPELYLPVNTAKRRQVARSEKRLRRLRLRHESQSAALSQAQATERLHADLRRAAGLGDIPQTMKCLDSGISVNVPDQSGLSAFLYACGQANAELVQILVDAGGDVLDGDGTITGLIIAARKGTMGVVQTLLEAGADVCARDSAGGTALHAATLHRHVDXXXXXXXXXXXXXXXXXXXXXXXXMLASVSSGKDGGSDVRGGETGADVAGLLLEWGASADIKNSKGLTPISAALDTRNRAMVLAYREFFGEDSGLAAVDADFDVESNRSDTTPATDNGRLPPESPKK---ATAVADPTRERNTFSA 565
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BLAST of mRNA_P-littoralis_Contig819.16.1 vs. uniprot
Match: A0A7R9VLG3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VLG3_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 5.180e-15
Identity = 61/190 (32.11%), Postives = 95/190 (50.00%), Query Frame = 1 
Query:  454 LRRAAGLGDITEMAKCLDFGISVNVPDQSGLSAFLYACGQANAELIRMLIDAGGDVLDGDGTITGLIIAARKGTLXXXXXXXXXXXXIDARDSAGGTALHAATLRRHVNXXXXXXXXXXXXXXXXXXXXXXXXMLASVSTGDGSIS--DRTGDAGLVALLLEWGASADVKNSKGLTPMSAALDTRNRATV 1017
            +R+A+  GD   + + ++ G+SVNVPD++G SAF YACG  + + +R+++ +  D+ D DG  T LI A R G              +++RD  G TAL  A    +V+     XXXX                 A+ + G+  +    R G   + +LLL+ GA A  KN+ G+TPM  A   R++  V
Sbjct:    1 MRQASSRGDTKCIKQLMEQGVSVNVPDKAGFSAFKYACGGGHLDAVRLMVQSA-DLNDADGRTTALIAATRNGHAPVVRFLLEEGADVESRDDGGNTALLIACAGGYVDCARALXXXXKKGGRRGGGADPN----AANAVGNAGLHLCARDGREEIASLLLDRGAEAGAKNASGMTPMEIAKARRHQGVV 185
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig819.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G731_ECTSI9.480e-15872.91Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A7R9VLG3_9STRA5.180e-1532.11Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig819contigP-littoralis_Contig819:60096..61617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G731
PFAMsAnk_2
Model size1203
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.55e-158
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-01_011230.1
Descriptionspectrin binding
Cds size1203
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791671.6987443-CDS-P-littoralis_Contig819:60095..606291680791671.6987443-CDS-P-littoralis_Contig819:60095..60629Pylaiella littoralis U1_48CDSP-littoralis_Contig819 60096..60629 -
1680791671.7138722-CDS-P-littoralis_Contig819:60948..616171680791671.7138722-CDS-P-littoralis_Contig819:60948..61617Pylaiella littoralis U1_48CDSP-littoralis_Contig819 60949..61617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig819.16.1prot_P-littoralis_Contig819.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig819 60096..61617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig819.16.1

>prot_P-littoralis_Contig819.16.1 ID=prot_P-littoralis_Contig819.16.1|Name=mRNA_P-littoralis_Contig819.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=401bp
RHRGRGKDSEARRIKRQLEVAERRVKNSLFINEAHQSLAEKATEREKEAN
ARAAEVGRRLDRALEKLKAIERKGMIANLEASCRRDEEGIHLAQRELRAH
QMDPELYLPVNTAKRRQLARSEQRLHRLQLRHESQAAALRQAQATERMHS
DLRRAAGLGDITEMAKCLDFGISVNVPDQSGLSAFLYACGQANAELIRML
IDAGGDVLDGDGTITGLIIAARKGTLEVVQTLLDAGADIDARDSAGGTAL
HAATLRRHVNVTRVLLEAGSDCNAIDQGNNTPLHMLASVSTGDGSISDRT
GDAGLVALLLEWGASADVKNSKGLTPMSAALDTRNRATVLAYRAFFGEDS
GLALTLDVDVGSENSTPSSIHQEQTSRGQKATENGTTAGEPVRERKTINA
*
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mRNA from alignment at P-littoralis_Contig819:60096..61617-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig819.16.1 ID=mRNA_P-littoralis_Contig819.16.1|Name=mRNA_P-littoralis_Contig819.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1522bp|location=Sequence derived from alignment at P-littoralis_Contig819:60096..61617- (Pylaiella littoralis U1_48)
CGACATCGCGGGCGAGGCAAGGACAGCGAAGCCAGGCGAATCAAGCGACA
GCTCGAGGTCGCTGAGCGCAGGGTAAAAAATTCGTTGTTTATTAACGAGG
CGCACCAGAGCTTGGCGGAAAAGGCCACCGAGCGAGAGAAGGAGGCCAAC
GCCCGCGCGGCCGAGGTTGGCCGGAGGTTAGACCGAGCGCTTGAAAAGCT
GAAAGCCATCGAGCGCAAAGGCATGATAGCCAACCTCGAAGCGTCCTGCA
GGAGAGACGAGGAGGGTATCCATCTCGCCCAGCGAGAGCTACGAGCCCAC
CAGATGGATCCCGAGCTGTATCTTCCGGTCAACACTGCCAAGCGACGGCA
GCTGGCACGCTCGGAGCAGCGCCTTCACCGCCTGCAGCTGCGGCACGAGA
GCCAGGCTGCCGCTTTACGCCAGGCGCAAGCGACCGAGCGAATGCACTCA
GATTTGAGGAGAGCGGCAGGCTTAGGCGACATAACGGAGATGGCGAAGTG
TTTGGATTTTGGGATTTCCGTCAACGTTCCGGATCAGAGCGGGCTTTCTG
CGTTTCTGTACGCCTGCGGCCAGGCCAATGCAGAGCTGATCCGGATGCTG
ATTGACGCTGGCGGAGATGTTCTCGACGGCGATGGCACCATTACAGGACT
GATAATCGCGGCTCGAAAGGTGAGCGAGGGGCATATGTCCATCATACCGA
ATGAATACCTTGTGCGACGAACCTCTTCAGCAATTTCTGAAGCGTTTACA
AGTTTTGGACATGAACGACAAAATTTTGCACGGCTCGCTGCATGCCTCTG
CTTGTTAATTAACTCCTTTGAAATAATCACTTGAGTACGACCGCCACGAC
TGCAAATACTTTGTAGAAGCCTCCTTTGTTTCGAGAGCTGAATAAACGTA
TCGCCTTGCGAGTGACAAAAACATCACCCAGCTTCAGAGCTGCAAAATGC
TGATGAAATGACACCTCTCCATCCGAAAAAAACCGAAGGGAACTCTGGAA
GTTGTCCAAACCCTGCTGGATGCTGGGGCAGACATCGACGCCCGCGATTC
CGCTGGAGGAACCGCCCTTCACGCGGCTACTCTTCGAAGGCACGTTAACG
TGACACGGGTTTTGCTGGAAGCAGGATCAGACTGCAATGCCATCGACCAA
GGAAACAACACCCCTCTTCACATGCTCGCATCGGTATCCACTGGCGACGG
CAGCATCTCAGACCGGACTGGTGATGCCGGGCTCGTTGCTCTGCTCTTGG
AGTGGGGAGCCTCCGCAGATGTTAAAAACTCCAAGGGCTTGACCCCGATG
TCGGCCGCCCTTGACACCAGGAATCGAGCCACGGTATTAGCCTACCGAGC
GTTTTTCGGCGAAGACAGCGGTCTCGCCCTGACGCTGGATGTAGATGTTG
GAAGCGAAAATAGTACTCCAAGTAGTATCCATCAAGAACAAACAAGTAGG
GGTCAGAAGGCGACGGAGAATGGCACCACTGCAGGAGAGCCCGTGCGGGA
ACGAAAGACGATTAATGCCTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig819:60096..61617-

>mRNA_P-littoralis_Contig819.16.1 ID=mRNA_P-littoralis_Contig819.16.1|Name=mRNA_P-littoralis_Contig819.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1203bp|location=Sequence derived from alignment at P-littoralis_Contig819:60096..61617- (Pylaiella littoralis U1_48)
CGACATCGCGGGCGAGGCAAGGACAGCGAAGCCAGGCGAATCAAGCGACA
GCTCGAGGTCGCTGAGCGCAGGGTAAAAAATTCGTTGTTTATTAACGAGG
CGCACCAGAGCTTGGCGGAAAAGGCCACCGAGCGAGAGAAGGAGGCCAAC
GCCCGCGCGGCCGAGGTTGGCCGGAGGTTAGACCGAGCGCTTGAAAAGCT
GAAAGCCATCGAGCGCAAAGGCATGATAGCCAACCTCGAAGCGTCCTGCA
GGAGAGACGAGGAGGGTATCCATCTCGCCCAGCGAGAGCTACGAGCCCAC
CAGATGGATCCCGAGCTGTATCTTCCGGTCAACACTGCCAAGCGACGGCA
GCTGGCACGCTCGGAGCAGCGCCTTCACCGCCTGCAGCTGCGGCACGAGA
GCCAGGCTGCCGCTTTACGCCAGGCGCAAGCGACCGAGCGAATGCACTCA
GATTTGAGGAGAGCGGCAGGCTTAGGCGACATAACGGAGATGGCGAAGTG
TTTGGATTTTGGGATTTCCGTCAACGTTCCGGATCAGAGCGGGCTTTCTG
CGTTTCTGTACGCCTGCGGCCAGGCCAATGCAGAGCTGATCCGGATGCTG
ATTGACGCTGGCGGAGATGTTCTCGACGGCGATGGCACCATTACAGGACT
GATAATCGCGGCTCGAAAGGGAACTCTGGAAGTTGTCCAAACCCTGCTGG
ATGCTGGGGCAGACATCGACGCCCGCGATTCCGCTGGAGGAACCGCCCTT
CACGCGGCTACTCTTCGAAGGCACGTTAACGTGACACGGGTTTTGCTGGA
AGCAGGATCAGACTGCAATGCCATCGACCAAGGAAACAACACCCCTCTTC
ACATGCTCGCATCGGTATCCACTGGCGACGGCAGCATCTCAGACCGGACT
GGTGATGCCGGGCTCGTTGCTCTGCTCTTGGAGTGGGGAGCCTCCGCAGA
TGTTAAAAACTCCAAGGGCTTGACCCCGATGTCGGCCGCCCTTGACACCA
GGAATCGAGCCACGGTATTAGCCTACCGAGCGTTTTTCGGCGAAGACAGC
GGTCTCGCCCTGACGCTGGATGTAGATGTTGGAAGCGAAAATAGTACTCC
AAGTAGTATCCATCAAGAACAAACAAGTAGGGGTCAGAAGGCGACGGAGA
ATGGCACCACTGCAGGAGAGCCCGTGCGGGAACGAAAGACGATTAATGCC
TAG
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