mRNA_P-littoralis_Contig819.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig819.10.1
Unique NamemRNA_P-littoralis_Contig819.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig819.10.1 vs. uniprot
Match: D7G729_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G729_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 3.850e-51
Identity = 107/166 (64.46%), Postives = 127/166 (76.51%), Query Frame = 1 
Query:   76 LIILFDAAQAFVGIPMALNGRGSAVYTKGWGSSIAQHTSAARLAAAP---PCAVSPPSMSLMVLADDAA-AAPNLPVSMEQQETIISVLSVXXXXXXXXXIGGAVYLSLAEWKNKKELEDTDKFTSAGQLPPEIAKEATP-ANPEEEGNRLQRRMMKKEKRKSGKI 558
            L++L  AAQAFVG P  L GRG+AVYTKGWGS IA+HTSAAR A +      +++PPSMSLM+LA+DAA AAP++P+S EQQE+II              I GAVYLSL EWKNKKEL++TDK+TSAGQLPP+IA EA P  + EEEGNRLQRRM KKEKRKSGK+
Sbjct:    7 LLLLLSAAQAFVGGPNVLIGRGNAVYTKGWGSRIARHTSAARQATSQRGLSASMAPPSMSLMLLAEDAAKAAPDMPISPEQQESIIXXXXXMSSVLLLIIISGAVYLSLEEWKNKKELKETDKYTSAGQLPPDIAPEALPPGDGEEEGNRLQRRMAKKEKRKSGKV 172
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig819.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G729_ECTSI3.850e-5164.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig819contigP-littoralis_Contig819:48599..55293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1332
Hectar predicted targeting categorychloroplast
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_011250.1
Cds size510
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791671.5107613-UTR-P-littoralis_Contig819:48598..493691680791671.5107613-UTR-P-littoralis_Contig819:48598..49369Pylaiella littoralis U1_48UTRP-littoralis_Contig819 48599..49369 -
1680791671.5637453-UTR-P-littoralis_Contig819:55242..552931680791671.5637453-UTR-P-littoralis_Contig819:55242..55293Pylaiella littoralis U1_48UTRP-littoralis_Contig819 55243..55293 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791671.5289643-CDS-P-littoralis_Contig819:49369..495541680791671.5289643-CDS-P-littoralis_Contig819:49369..49554Pylaiella littoralis U1_48CDSP-littoralis_Contig819 49370..49554 -
1680791671.5437136-CDS-P-littoralis_Contig819:50380..506051680791671.5437136-CDS-P-littoralis_Contig819:50380..50605Pylaiella littoralis U1_48CDSP-littoralis_Contig819 50381..50605 -
1680791671.5540893-CDS-P-littoralis_Contig819:55142..552421680791671.5540893-CDS-P-littoralis_Contig819:55142..55242Pylaiella littoralis U1_48CDSP-littoralis_Contig819 55143..55242 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig819.10.1prot_P-littoralis_Contig819.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig819 49370..55242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig819.10.1

>prot_P-littoralis_Contig819.10.1 ID=prot_P-littoralis_Contig819.10.1|Name=mRNA_P-littoralis_Contig819.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp
MVRYSLLPLIILFDAAQAFVGIPMALNGRGSAVYTKGWGSSIAQHTSAAR
LAAAPPCAVSPPSMSLMVLADDAAAAPNLPVSMEQQETIISVLSVASSAL
LLIIIGGAVYLSLAEWKNKKELEDTDKFTSAGQLPPEIAKEATPANPEEE
GNRLQRRMMKKEKRKSGKI*
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mRNA from alignment at P-littoralis_Contig819:48599..55293-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig819.10.1 ID=mRNA_P-littoralis_Contig819.10.1|Name=mRNA_P-littoralis_Contig819.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6695bp|location=Sequence derived from alignment at P-littoralis_Contig819:48599..55293- (Pylaiella littoralis U1_48)
AAGGCACAGCACGCAGGACGCACTTGTGTTGCATCTCTCCCAGCTACCAT
CATGGTCCGATATTCTCTTCTGCCCCTGATTATTTTATTTGATGCCGCGC
AAGCTTTTGTGGGTATTCCCATGGCGCTGAACGGGCGGGGTAGCGCTGTA
TGTGAGTCCTCCAATCGTAGATCGATTACATGAAAACTTGCTCATGTTTA
GCAACTTTGTCAGTTATCCTAATGGCACTTGGGCCCTCTCCAGGTTCATG
GGCATATGCTCATGCTGTCTAAGGTGCACAAAGCGAATATGCTGCCCGTT
GGTTTTGACACCACCTCCGTTCGCTGCCTTTAGCGAATGCCGAGAGAAAG
GCTGGAGTTGTGTCAGCCAGGTGAAACTTCAAAAGCAGTTGGAGGCAGCT
TCGGGGGGGGGTCATATCTCACATCATACATGCACCTCCACATTGCAAAG
AAGTACTTGTATCTCACAAAGCCGACCTACAAGTCAATGTCGTTTCATAA
TACTCCGGAGTACCTGGTACCAGGTATGATATCAGGTATCAGTTCCGGCA
GGATAAAAATATGACGCAGGTTTGCAACTTTGGGCGATGTGAACGTGACA
ACTCCCTCATTTTTCGTTGAGAAAGGCTTTTTTCCAGGGATGTACGGAGT
ACATAATAACTTGGTTCGGGACCCAAACGTAACTAGGTAATAAGGCGGTT
TCTTGCAGGGCCGGATATTTTATTCATTTTTTGACAGATTCCGATTTTTT
TTTGAGATCAGGCTTCTTGTAGGTTCGGAAAACACCTTTTTCCGAACAAC
ATTTTCCGAACAAAATTTTCCGAACAGCTTTTAATCGGATTTCAGCCGGA
AAATCGGACATTTTCCGAACGCTGGATCAGTTCGGAAAATATGATCGGAA
AATATATAAAAAAAAAAATGTGTGAAGTTGTCTCTCTCTTTGTGTTTGGA
CAAAACAAACGATATTAGGTAATCATAACAGAGCATCAGAGGAGGAGAGC
TGCTGCTACTACTTGCTGTGTTGTTGCAGCTGCTTCTCCTGCTGCTGCTG
CTACTACTGCTTGCTGCCGTCCATACATGTGTCCACCATCTTTCTGCGTA
CGCTTGCCGTGTCATCATTCGTACCATCGTGTTCATCAGCAACCAAAACC
AACCGTATGTAGCAGCAGCATCATCAGCACAGCAGCAGCAGCAGGAGGAG
GAGTATCAAAGCTTCCTCTGAGAGAGACCAGTTTGCATCTTCGCTCGTAA
CTCCCCAATGAATGAAGCCACAGTGATGACAAACCCATCTCCCGTGAGCT
GTGCGTATGGCTCCCCTCGTGTGGTAATCGTTTGGGTGAGGATCACACTG
GCATGTTCGCAAAATGGTCATTGCTCGTGGCTGTGGCATGTTGTGTTGTA
AAAAAGAACCCGAGCTGTCATCTCATTTCTCTACTGCTGTACAACTACCA
TACATACAGCAGTATATAATAATGCTGCTGTACAGCAGACCGGCTGATAC
ATCTTTCTCAATTTGTTTCGCATGAGTTGGCCATGAGCAAACCTACGTTG
CGAATGTACGGACGTAACCGTAACCCAAGCGATCACGACACGAGGGGGAT
CATATACACAGCTCACGGAAGATGCCTTCGTCATTGCTGTGTCTTCATTC
GTTCGAAAGTTACGAGCGGCGATGCAAACGGGTTTCAGCGCAAAAAACAC
CACCATGCGGTCCTTCGATGCAGATATATACTCTGGAGCCGACTCTTCAA
CCAACTAAGGATCACCGAAAATCCGAACACCCATTACCTATAAGAACAGC
GGATCGGCAGCCGTTGGCCGGAAAAAGTTCGTTCGGATTCTATCAAAAAA
TGAAAAAAAAATCCGGCCCTACAAGAAACCGCCTAATGCCTCAGGCGGTT
TCTTGTACGAGTAGGGCCGGATTTTTTTTCATTCTTGATAGATTCCGAAT
TTTTTTGGTAAATTAATCAGGCTTCTTATCGGCTCGGAAAACACCAATTT
TCCGAACAACATTTTCCGAACAAAATTTTCCGAACAGCTTTTAATCGGAT
TTCAGCCGGAAAATCGGACATTTTCCAAACGCTGGATCAGGCCCAATCTT
ATGGTAGATGGGCAGCTGGAATTTCTCGACTTGGAAAAGCGTTTTCTAAG
CCTGATATTCCAAGTCGGACAATCAGACTGGTGCCAACTTTATGGGAGAA
CTGAAAAATTTGGGCAGCGATTGGAAATCAGATGGGGTTGCAGGACGGAC
GGCAGGCGGTTTGGGCTATTTTCGATAAACTGCTGCTGATGGCGCAGAGC
GGCGAGCGTTATCGCCAGCACGGCCAGGATCGCACGTCGCCTTGGTACCT
GCACCTGGCCAGTGTGTTTGGGTGCTCGGTTGTTTGTATTTGTGCTTGTT
GTGTGCTGTGAACCACTGCGGCGAAACCTCGTGGCTGCGCGCGCGACGGA
TTCCAGGCCTGGAATCCAGGTCATTTGGCCTGGAATCCGAGGGCAGATTC
CAGGCGAGTCGCCTGGAATCCGGAGAACTGGAAAATATTTTCCAGTTTCG
GCCGAAAACAATCCCCATAAGATAGAAATATTTTCCAGGCCTGGAATTTG
GATTCCAGTTCCTCATGTGAAACCCTTGGATTCCAGTTTTCGGCTTTACC
ATAAGAGTGGGCCTCAGTTCGGAAAATACGATCGGAACATATATAAAAAA
AAATGTGTGAAGTTATCTCTCTCTTTGTGTGTGGACAAAACAAACGATAT
TAATCACAACAGAGCATCAGAGGAGGAGAGCTGCTGCTACTACTTTCTGT
GTTGTTGCAGCTGCTGCTCCTGCTGCTGCTGCTACTACTGCTTGCTGCTG
TCCATACATGTGTCCACCATCTTTCTGTGTACGCTTGCCGTGTCATCATC
CATTCCATCGTGTTCATCAGCAACCAAAACCAACCGTATGTGGCAGGAGG
AGCATCATCAGCACAGCAGCAGCAGCAGGAGGAGTATCAAAGCTTCCTCT
GAGTGAGACCACAGTTTGCATCTTCGCTCGTAACTCCCCCGTGAATGAAG
CCACAGCGACGACAAACCCATCTCCCGTTAGCTGTGCGTATGGCTCCCCT
CGTGTGGTAATCGTTTGGGTGAGGATCACACTGGCATGTTCGCAAAATGG
TCACCGCTCGTGGCTGTGGCATGTTGTTGTGTTGTAAAAAAGAACCCGAG
CTAGCTGGCATCTCCTTTCTCTACTGCTGTACAACTACTATACATACAGC
AGTATATAATAATGCTGCTGTACAGCAGACCGGCTGATACATCTTTCTCA
ATTTGTTTCGCATGAGTTGGCCATGGGCAAACCTACGTTACGAATGTACG
GATGTAACCCTAACCCAAGCGATCACGACACGAGGGGGATCATATACATA
CACAGCTCACGGAAGATGCCTTCGTCATTGCTGTGTCTTCATTCGTTCGA
AAGTTACGAGCGGCGATGCAAACGGGTTTCAGCGCAAAAACAAAAAACAC
CACCATGCGGTCCTTCGATACAGATATATACTCTGGAGCCGACTCTTCAA
CCACCTACTTAAAAAAGGATCACCGAAATTCCGAACACCCATTTACCTAT
AAGAACAGCGGATCGGCAACCGTTGGCCGGGAAAAGTTCGTTCGGATTCT
ATCAAAAAATGAAAAAAAAATCCGGCCCTATAAGAAACCGCCTCAGTAAT
GGGATTTCGAAACATTACTCACATTACTCGTCGGCTGGCGCCGGCGATAT
GGAACTCCCTGTCATGTGCGTTTTATTTTTTGTGTTTTGATATTCAACTC
TGTTTTTACATGAACACACGGGATTACACTGAAGTAACATCGCAGCATCA
TCCACTCTCTCTGTTGCACTGGTTGCACACACAACTCTTTCCTGCTGTTC
ACCTTCGGCTCGACCAAGGCGTGCGAAAAGCTTGCATACCAACCATGCAA
GCTTGCTTTTTTTTTGTTTTAACGTGTACGATGCTCCACCCTACACACTG
CACCGCCACCGTCCAAACCTTGAACAGAAACCGAAAGCCATGCGCCGAAG
GTGTTCAACCCAGAACTAAAATACCGAAGATGTCTGCTGGGCTTGCTGTC
TGCTGTCTGCTGTGCTTGCTGTGTGAAGCTGTCTGCTGCCTCTGCTGTGC
TTGTGTTTTGGAGCTGGCTGGGGCCCCGTGCTTGTGTGTTGGAGCTGGCT
GGGGCCCCACAAATAGGGATTTAATTCCAAAAATATTAGCATTTTTTTAG
GGGGGCCGTTCGGGTTCAAACATTACTGGCCGCTTCAAACATGACTGGCC
AAAGCAAACATTACTCAACATTACTCATATCCAGTCATGTACATCCTTGC
TTTTTTCCGCCAAAGTAGTGTCCATAAATCACCACATCACATGATATCAT
ACGTCGAAGTATCGTACAACTGCTGCTGTATACCGGTACTACACTACTTT
GCACCTGTACTCCCCCTTTTTTGCACAGCGAAGGTTACTACCGATTTACG
ATGCACCCTCCCCCCCCCCTCCTTTGAGCACAGCGAAATAACGCCTGCTA
CCACGCGCACCAATGTAGGACCAGCCAGCGTGTGATACCAGGATGTCAAA
ACATTCAACACTAAATCTAGACATGAGCCCCACCTTTACCCATTTGCCCT
TGATGCTGTGCGTCAATTCTTGCTTCGGGCTTTCTCAGATACGAAAGGAT
GGGGGTCCAGTATAGCTCAACACACCAGTGCGGCGCGGCTAGCGGCGGCT
CCGCCCTGCGCCGTTAGCCCTCCGTCCATGAGCTTGATGGTCCTGGCAGA
CGACGCAGCGGCGGCACCAAATTTGCCCGTGTCCATGGAGCAGCAGGAGA
CCATCATCTCGGTGTTGAGCGTGGCCTCCTCTGCGTTACTTCTGATAATT
ATCGGAGGGGCTGGTGAGAACAGGGTACAGCTGTCGTACCGTAATCGAGA
GGAACGCCGTCGTGTATGTATGTTGATTTTCGTGTTTGTGCGTTCGAGTT
TTCGATACTAAAGAGGTCCCAGCTGGCGGCACCGAGCTTTGTTTTGGATT
TTGAATTGTGAACTTCTCGCATCCAAGCACAATGTAGTTTCACTGATTTT
CGTGAAGCCTTTTCTTTCTCCTCCCAAATTTCGATTCCGGTACTGCTGTT
GAGATAGCGGCGGGTGGGCGATGCAGGGGAAGACACCCCTCGCCCCTCTC
GTTGAAAGCAGCAAAAATTCATATGCGCTATCGGTGGATCTGGGCTGCTG
TTCGAGAGACACTTGCCTCTGTCGACGATCTGCGTGGCAACCAACTGCTC
GCGGCGTAGTTACGGTTGAATTTCAGGAGGCCTTTTCATGCGGACGGCAT
TCACTTGAAGTCCGTGCTTTGGCAACCAACTGGTCATGCGTGAGATCGAG
CACCAGCAAGATGGTGTGGTATTGGAACAAGCAGAGTGTCCGAAAACTTG
CGCCCTTGGCACGAGTGGGCTAAAAGCGTGTGATGGATGGACACCTTGGC
GGCATACCTGAGCGATGAAAAAATCTTCTTGCGTTTCGATGTCCACTTCC
CGGTCCACCATGAAGGTCATCGAATCACAGAATCGCCTCTCGAACCCAAG
GATGGTGTGGAATCACGCACCTCCAAAGTGTCAGACGCGTACTTGCATCA
TACGTGGACTGTACTTTGTTCTTCTTAATCCCCCCCCGCCGGTTGCGCTA
TTTTTGATTTTTGCCCTGCCGTCGGCATTTTCCGAGAAGTTTATTTGTCG
CTAGCGGAATGGAAAAACAAGAAGGAGCTCGAGGACACGGACAAGTTTAC
CAGTGCCGGACAGCTGCCCCCGGAGATCGCAAAGGAGGCAACACCGGCGA
ACCCAGAAGAGGAAGGCAACCGATTGCAACGACGCATGATGAAAAAGGAA
AAACGGAAATCCGGGAAGATTTAAAGCACGCGAAAAGCCGGCAGATGGGC
TGGCCGTTTTTTGACGCGACAGACCTCCCAGTGGCGAGGGAAAAAGTGCT
TGCTGTTGTCGTCTTTTCTTTCAAGGCCTCACAACGTCAACGGGCTTCCG
GCCTATGACGCAGTTTCGATACATTGTGGAATAGAGGGATCTCCTGTGTG
GTACGACATCATACGCGAAGTATAGTTGTGCACCTTTTCGTGTGCAAGCT
CTACTAGCGATAGGGTCCGGACGAGGTTTTCTCAGAATATACGCAGCCCA
AACTGCATAGGCTGAGCATGTTGCATTGGCTGGAGGGTCGCCCATTCAGT
TTAAATAGTAGACATGCCAGGACGGACTCCAAATTTTCATGAGGTCGTTG
ATTTTTTTAGGCGGTAGCTGTTGCCTCATAAGTGCCTATTTTGGAGAACG
GAAGCCCATGTTTGGTCGAGTCAAAATGAAACGTTGCTCAGCAGATTACA
CTCCAGCCAATGGTTTGGAAGCTGTGCGCGTGAATGCCTCTTGATGAGTT
TTGGCCGAGCAGAAGACAGCGTCACCGATGATGCACTCCGTGCCTCTCTT
GCCGTATAGTATTGTACGGCAGCGACACAGCGGAAGTAGATGTTCCATTC
GAAACGGAAGCATGCGGGCTCGCTGCGATGTGGCGTGCCTGCTCAAACAT
TTGTCTACAAAAGGTTGGACACGGAAAATGCCGGGTGCCCTTTGGCTGTC
CGATGTAACTCAGGCCTTCGAAATTTTAATCACAACAATCTCCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig819:48599..55293-

>mRNA_P-littoralis_Contig819.10.1 ID=mRNA_P-littoralis_Contig819.10.1|Name=mRNA_P-littoralis_Contig819.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig819:48599..55293- (Pylaiella littoralis U1_48)
ATGGTCCGATATTCTCTTCTGCCCCTGATTATTTTATTTGATGCCGCGCA
AGCTTTTGTGGGTATTCCCATGGCGCTGAACGGGCGGGGTAGCGCTGTAT
ATACGAAAGGATGGGGGTCCAGTATAGCTCAACACACCAGTGCGGCGCGG
CTAGCGGCGGCTCCGCCCTGCGCCGTTAGCCCTCCGTCCATGAGCTTGAT
GGTCCTGGCAGACGACGCAGCGGCGGCACCAAATTTGCCCGTGTCCATGG
AGCAGCAGGAGACCATCATCTCGGTGTTGAGCGTGGCCTCCTCTGCGTTA
CTTCTGATAATTATCGGAGGGGCTGTTTATTTGTCGCTAGCGGAATGGAA
AAACAAGAAGGAGCTCGAGGACACGGACAAGTTTACCAGTGCCGGACAGC
TGCCCCCGGAGATCGCAAAGGAGGCAACACCGGCGAACCCAGAAGAGGAA
GGCAACCGATTGCAACGACGCATGATGAAAAAGGAAAAACGGAAATCCGG
GAAGATTTAA
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