mRNA_P-littoralis_Contig818.27.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig818.27.1 vs. uniprot
Match: A0A6H5KTY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY3_9PHAE) HSP 1 Score: 374 bits (960), Expect = 6.170e-115 Identity = 197/347 (56.77%), Postives = 233/347 (67.15%), Query Frame = 3
Query: 42 VAAVAEMEARERLSAEGGTSAQGKGEGCPIVRGEPGSNGVCIAVNGVLRCILCQSNVERAAVPIGKPGNGKKF------HCRNCWRPVCDNCIGAFWAKSMVPPRYAYNSNEHRLRVCKMCNATMEAFRTALLLGQAEEAMSAYSTGCVNSDRPYTIYHGELPVHCAAAGGNVRLLSWLVDELGCRLFADPLNKVPRRDVRRLTVLGAAAVXXXXXXXXXXXXXXXXSLSEIKHKPTLKAALDVCLRGSTHATDDAERSHYKMVTGTPALLGNFEGVSNGAPAVAA---AGVDEEDNNCCIVCFDGDVDCTLVPCGHHCCCVTCASELSVCPVCRAPISQKIKAIPV 1055
VAAVAE+EAR+RLS G + + G R + G+ G G LRC LC S P G G + +CRNCWR VCD+C+G FWA++MVPPRYA + R+RVCK CNA MEAFRTALLLG+AE+AMSAYSTGCVN DRPYT++HGELPVHCAAAGGNV LLSWLV+ELGC +F D KVP +D+R LTVLGAAAV S+SEIKH PTLK ALD CL GS T DAERS Y+ P LG+ GV G+ + A+ A + E +NCCIVCFD +VDCTLVPCGHHCCC+TCAS+ S+CPVCR ++ KIK IPV
Sbjct: 452 VAAVAELEARDRLSF-GSVNVEVAGPVVERGRAKSGAGGA-----GTLRCALCMSTNVSVVHPPGGNNRGNRXXXXXNKNCRNCWRVVCDDCVGTFWARNMVPPRYASERDGFRMRVCKTCNAAMEAFRTALLLGRAEDAMSAYSTGCVNLDRPYTVFHGELPVHCAAAGGNVGLLSWLVEELGCPIFTDSDKKVPIKDLRSLTVLGAAAVNGQVQAMRYLVNQQGCSVSEIKHLPTLKIALDACLHGSAK-TRDAERSRYRANGNDPDPLGSAGGVCFGSRSTASLTTAAAEVETDNCCIVCFDNEVDCTLVPCGHHCCCITCASKFSLCPVCRTTVTHKIKTIPV 791
BLAST of mRNA_P-littoralis_Contig818.27.1 vs. uniprot
Match: D7FYF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF5_ECTSI) HSP 1 Score: 269 bits (687), Expect = 4.120e-76 Identity = 162/263 (61.60%), Postives = 186/263 (70.72%), Query Frame = 3
Query: 42 VAAVAEMEARERLSAEGGTSAQGKGEGCPIVRGEPGSNGVCIAVNGVLRCILCQSNVERAAVPIG----KPGNGKKF--HCRNCWRPVCDNCIGAFWAKSMVPPRYAYNSNEHRLRVCKMCNATMEAFRTALLLGQAEEAMSAYSTGCVNSDRPYTIYHGELPVHCAAAGGNVRLLSWLVDELGCRLFADPLNKVPRRDVRRLTVLGAAAVXXXXXXXXXXXXXXXXSLSEIKHKPTLKAALDVCLRGS--THATDDAERSHY 806
VAAVAE+EAR+RL++ G + + G R G+ G G LRC LC S A P G + GN +CRNCWR VCD+CIG FWA++MVPPRYA + R+RVCK CNA MEAFRTALLLG+AE+AMSAYSTGCVN DRPYT++HGELPVHCAAAGGNV LLSWLV+ELGC +F D KVP RD+R LTVLGAAAV XXXXXXXXXXXXXXX + EIKH PTLK ALD CL GS T T + + Y
Sbjct: 450 VAAVAELEARDRLNS-GSVNVEVAGPVVQRGRANSGAGGA-----GTLRCALCMSTNVSAVHPPGGNTRRNGNSSSSDKNCRNCWRVVCDDCIGTFWARNMVPPRYASEGDGFRMRVCKTCNAAMEAFRTALLLGRAEDAMSAYSTGCVNLDRPYTVFHGELPVHCAAAGGNVGLLSWLVEELGCSIFTDSDKKVPIRDLRSLTVLGAAAVNXXXXXXXXXXXXXXXXVLEIKHLPTLKIALDACLHGSAKTRVTLELQSGDY 706
BLAST of mRNA_P-littoralis_Contig818.27.1 vs. uniprot
Match: A0A6H5KTC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC5_9PHAE) HSP 1 Score: 235 bits (599), Expect = 6.430e-64 Identity = 126/306 (41.18%), Postives = 163/306 (53.27%), Query Frame = 3
Query: 186 RCILCQSNVERAAVPIGKPGNGKKFHCRNCWRPVCDNCIGAFWAKSMVPPRYAYNSNEHRLRVCKMCNATMEAFRTALLLGQAEEAMSAYSTGCVNSDRPYTIYHGELPVHCAAAGGNVRLLSWLVDELGCRLFADPLNKVPRRDVRRLTVLGAAAVXXXXXXXXXXXXXXXXSLSEIKHKPTLKAALDVCLRGSTHATDDA--ERSHYKMVTGTPALLGNFEGVSNGAPA--------------VAAAGVDEEDNNCCIVCFDGDVDCTLVPCGHHCCCVTCASELSVCPVCRAPISQKIKAIPV 1055
RC +C S ++ HCRNC R VC C FW +SM+PP Y +++E ++RVC C E FR A L G E AM+A+STGCVN PYTIYH ELPVHCAA+GGN+ +L+WLVD+ C LF D K+ D RRL+V+GAAA ++EI+ +L AL+ CL + + RS +GTP+ A +D+N CIVCF+ VDCTLVPCGHHCCC+TCA++ CPVCRA + QKI+AI V
Sbjct: 381 RCAVCDSTFGYVLK--------RRHHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCSTCYVAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKKIALGDSRRLSVMGAAAASGHVQIMRYLAFTQGCKVTEIRDMGSLWRALEKCLYDGANVVPETGGHRSRISNNSGTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEVAAPLGDDDNMCIVCFERKVDCTLVPCGHHCCCLTCAAQFEQCPVCRADVEQKIRAISV 678
BLAST of mRNA_P-littoralis_Contig818.27.1 vs. uniprot
Match: A0A7S3YF48_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YF48_HETAK) HSP 1 Score: 157 bits (396), Expect = 2.510e-38 Identity = 100/295 (33.90%), Postives = 139/295 (47.12%), Query Frame = 3
Query: 261 HCRNCWRPVCDNCIGAFWAKSMVPPRYAYNSNEHRLRVCKMCNATMEAFRTALLLGQAEEAMSAYSTGCVNSDRPYTIYHGELPVHCAAAGGNVRLLSWLVDELGCRLFADPLNKV-PRRDVRRLTVLGAAAVXXXXXXXXXXXXXXXXSLSEIKHKPTLKAALDVCLRGSTHAT--------------DDAERSHYK--------MVTGTPALLGNFEGVS-------NGAPAVAAAGVDEEDNNCCIVCFDGDVDCTLVPCGHHCCCVTCASELSVCPVCRAPISQKIKAIPV 1055
HCRNC R VC C A W M+P Y + E + RVC+ C ME FR AL G A +AY+TG VN PYT++ GE PVHCAAAGG++ LL+WLVDE G DP +K P +T + A S+ +I + AA + L + T D+A + V TP +FE ++ G AV+ AG++E + C++CF+ +++ +VPCGH C C+ + + CPVCR P+ Q IK V
Sbjct: 97 HCRNCGRVVCRECARAHWPPRMLPATYLDGAGEKKARVCRGCQWAMEDFRAALRRGDAPGVRAAYATGVVNLRTPYTVHGGEYPVHCAAAGGSLPLLAWLVDERGA-FVRDPQSKQRPLFASDGITSCMSLAAVNGNLEMMRWLTQHECSVRDIVNLEHFYAATEKLLALPSTGTAGPLNSEPVAAALVDNARPPPFNPQQSVVVASVGSTPISAPSFESITPSAGIEQQGVTAVSGAGMEENE---CVICFENNINTVIVPCGHTAVCDGCSGKFTECPVCREPVQQVIKTFGV 387
BLAST of mRNA_P-littoralis_Contig818.27.1 vs. uniprot
Match: D7FYF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF4_ECTSI) HSP 1 Score: 161 bits (408), Expect = 1.520e-37 Identity = 122/402 (30.35%), Postives = 160/402 (39.80%), Query Frame = 3
Query: 141 EPGSNGVCIAVNGVLRCILCQSNVERAAVPIGKPGNGKKFHCRNCWRPVCDNCIGAFWAKSMVPPRYAYNSNEHRLRVCKMCNATMEAFRTALLLGQAEEAMSAYSTGCVNSDRPYTIYHGELPVHCAAAGGNVRLLSWLVDELGCRLFADPLNKVPRRDVRRLTVLGAAAVXXXXXXXXXXXXXXXXSLSEIKHKPTLKAALDVCLR--------------------GSTHAT-------------DDAERSHYKMVTGT---PALLGNFEG--VSNGAPAVAAAGVDE------------------------------------------------------------EDNNCCIVCFDGDVDCTLVPCGHHCCCVTCA-SELSVCPVCRAPISQKIKAI 1049
EP N C V R +L + ++ HCRNC R VC C FW K M+P Y +S E R+RVC+ C + +AFR ALL G + AM A+ TGCVN P++ ELPVHCAAAGGNV L+ WL+++ C +F D +P D +V+ AAA + S + P + L CLR G++H DD +S Y + + PA N G V G + G D + N CIVCFD V+CT VPCGHHCCC+ CA S+L++CPVC I +KIK I
Sbjct: 514 EPTPNSTCAECQSVFRPVLQR----------------RRHHCRNCGRLVCTTCALRFWPKHMLPHSYRTSSTERRVRVCRTCYSVGKAFRRALLRGSYQGAMEAHGTGCVNLRAPFS--DRELPVHCAAAGGNVSLMMWLLEDRCCPIFMDDEKTMPHLDGAGRSVMAAAADSGRVEMMRYLTFTQPSAASGMGMAPFWRG-LQACLRNDEDKHDDDRGRGRDRAPLEGTSHPEPKGRGGSRDAGGGDDGGKSCYPVGSSADRNPAWRSNAPGSAVGGGNGSGGVEGCDTFLAGMRAGAXXXXXXXXXXDRDPLQAALEMSVVEAGYSIYELTTGKDGSGXXXXXXXXXMKGKNACIVCFDRPVNCTFVPCGHHCCCMPCAESKLNLCPVCGVAIDKKIKTI 896
BLAST of mRNA_P-littoralis_Contig818.27.1 vs. uniprot
Match: A0A6H5KUU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU5_9PHAE) HSP 1 Score: 160 bits (406), Expect = 3.150e-37 Identity = 122/391 (31.20%), Postives = 162/391 (41.43%), Query Frame = 3
Query: 189 CILCQSNVERAAVPIGKPGNGKKFHCRNCWRPVCDNCIGAFWAKSMVPPRYAYNSNEHRLRVCKMCNATMEAFRTALLLGQAEEAMSAYSTGCVNSDRPYTIYHGELPVHCAAAGGNVRLLSWLVDELGCRLFADPLNKVPRRDVRRLTVLGAAAVXXXXXXXXXXXXXXXXSLSEIKHKPTLKAALDVCLR------------------------GSTH-------------ATDDAERSHYKM---------------------------VTGTPALLG-NFEGVSNGAP-----------------AVAAAGVDEED---------------------NNCCIVCFDGDVDCTLVPCGHHCCCVTCASEL-SVCPVCRAPISQKIKAI 1049
C CQS+ P+ + +K HCRNC R VC C FW K M+P Y +S E R+RVC+ C + ++FR ALL G + AM AY TGCVN P++ ELPVHCAAAGGNV L+ WLV++ C +F D +P D +V+ AAA + S + P + L CLR G++H DD +S Y + V G+ L +F G+ GA +VA AG + CIVCFD V+CT +PCGHHCCC+ CA + ++CPVCR I +KIK I
Sbjct: 591 CAECQSSFR----PVFQR---RKHHCRNCGRLVCTTCAWRFWPKHMLPHSYRTSSTERRVRVCRTCYSVGKSFRRALLRGSYQGAMEAYGTGCVNLRAPFS--DRELPVHCAAAGGNVSLMMWLVEDRCCPIFMDDEKTMPHLDGAGRSVMAAAADSGRVEMMRYLSFTQPSAASGMGMAPFWRG-LQACLRNDEDKHDDDRGRGRDRAPLEXGYMGTSHPEPKERGGSRDAGGDDDGGKSCYPVGSSADRSPAWRSNTPSSAVGGGNGSSGVEGSDTFLDTSFVGMRAGAGXXXXTGDRDPFQAALEMSVAEAGYSIYELTSGKGXXXXXXXXXXXXXXXXXACIVCFDRPVNCTFMPCGHHCCCMPCAESMFNLCPVCRVAIDKKIKTI 971
BLAST of mRNA_P-littoralis_Contig818.27.1 vs. uniprot
Match: D8LDM9_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM9_ECTSI) HSP 1 Score: 145 bits (366), Expect = 6.680e-36 Identity = 68/140 (48.57%), Postives = 85/140 (60.71%), Query Frame = 3
Query: 186 RCILCQSNVERAAVPIGKPGNGKKFHCRNCWRPVCDNCIGAFWAKSMVPPRYAYNSNEHRLRVCKMCNATMEAFRTALLLGQAEEAMSAYSTGCVNSDRPYTIYHGELPVHCAAAGGNVRLLSWLVDELGCRLFADPLNK 605
RC +C S ++ HCRNC R VC C FW +SM+PP Y +++E ++RVC C E FR A L G E AM+A+STGCVN PYTIYH ELPVHCAA+GGN+ +L+WLVD+ C LF D K
Sbjct: 57 RCAVCDSTFGYVLK--------RRHHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCSSCYGAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKK 188
BLAST of mRNA_P-littoralis_Contig818.27.1 vs. uniprot
Match: A0A836CC14_9STRA (FYVE-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC14_9STRA) HSP 1 Score: 134 bits (337), Expect = 9.670e-32 Identity = 74/195 (37.95%), Postives = 97/195 (49.74%), Query Frame = 3
Query: 189 CILCQSNVERAAVPIGKPGNGKKFHCRNCWRPVCDNCIGAFWAKSMVPPRYAYNSNEHRLRVCKMCNATMEAFRTALLLGQAEEAMSAYSTGCVNSDRPYTIYHGELPVHCAAAGGNVRLLSWLVDELGCRLFADPLNKVPRRDVRRLTVLGAAAVXXXXXXXXXXXXXXXXSLSEIKHKPTLKAALDVCLRGST 773
C LC+S + ++ HCRNC R VCD C W SM+P Y+ E + R+C C T EAFR ALL G A +AY GCVN PY+IY LPVHCAA GG++ LL+WL++E C LF D + + R+ +V+ AA ++EI L ALD LR S+
Sbjct: 37 CALCKSYFGMLS--------RRRHHCRNCGRAVCDACAKTSWPSSMLPFTYSAAKQERKCRICDTCAETNEAFRAALLAGDDAAARAAYRRGCVNLRCPYSIYLNGLPVHCAAEGGSMALLAWLLEEKHCPLFKDLSRTIALGNGRKESVMAVAAQNGHTHIMRYLLHKHSVKVNEITDHKALWRALDKALRESS 223
BLAST of mRNA_P-littoralis_Contig818.27.1 vs. uniprot
Match: A0A6S8XUE4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8XUE4_9STRA) HSP 1 Score: 124 bits (311), Expect = 1.210e-25 Identity = 86/299 (28.76%), Postives = 129/299 (43.14%), Query Frame = 3
Query: 261 HCRNCWRPVCDNCIGAFWAKSMVPPRYAYNSNEHRLRVCKMCNATMEAFRTALLLGQAEEAMSAYSTGCVNSDRPYTIYHGE---LPVHCAAAGGNVRLLSWLVDELGCRL----FADPLNKVPRRDVRRLTVLGAAAVXXXXXXXXXXXXXXXX------SLSEIKHKPTLKAALDVCLRGSTHATDDAERSHYKMVTGTPALLGNFEGV-------------------------SNGAPAVAAAGVDEEDNN---------CCIVCFDGDVDCTLVPCGHHCCCVTCASELSVCPVC 1016
HCRNC +C +C W+K +P Y NE+ ++VCK C++ FR +LL E+A++ Y+TG VN P+ GE LP+HCAA GG++ LL WLVD C + + NK +V T G + V S+S IK AL++ L+ S + H T P L+ G+ S+G + A D +D++ CI+C++ +DC + PCGH CC+ C++ + CPVC
Sbjct: 512 HCRNCGVCICSSC-SVSWSKVCIPETYNIK-NENVVKVCKSCSSLSRMFRRSLLDANCEDALTIYNTGNVNLRCPFMTSKGEEAMLPIHCAAEGGSLDLLRWLVDIHFCPIKKIRTGNNRNKSQNANVLITTGKGRSVVEIAMSGVPSADILRYLVNEKNASVSGIKDLSIALNALEMVLKSSQPSQPS---QHLPNPTSRPELMSGISGINTPERNRINNDLPSYNISADGDSTDSDGEAPIDARYNDADDDDGSVCTTVRDACIICYENSIDCVITPCGHQICCLQCSTNMKACPVC 805
BLAST of mRNA_P-littoralis_Contig818.27.1 vs. uniprot
Match: A0A7S4QY11_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QY11_9STRA) HSP 1 Score: 108 bits (271), Expect = 7.560e-21 Identity = 87/303 (28.71%), Postives = 125/303 (41.25%), Query Frame = 3
Query: 261 HCRNCWRPVCDNCIGAFWAKSMVPPRYAYNSNEHRLRVCKMCNATMEAFRTALLLGQAEEAMSAYSTGCVNSDRPYTIYHGEL--PVHCAAAGGNVRLLSWLVDELGCRLF---ADPLNKVPRRDVRRL-------TVLGAAAVXXXXXXXXXXXXXXXXSLSE-IKHKPTLKAALDVCL--------------------RGSTHATDD---AERSHYKMVTGTPA------------LLGNFEGVSNGAPAVAAAGVDEED-NNCCIVCFDGDVDCTLVPCGHHCCCVTCASELSVCPVCRA 1022
HCRNC +C +C W+ +P Y NE ++VCK C+ FR LL G EEA+S + TG +N + GE PVHCAA GGN++LL WLVD C + + K R+ L TVL A + + +K T AL+ L RGS++ + AE ++ + P+ L + +A+ VD + CI+C++ +DC + PCGH CC+ C+ LS CPVC A
Sbjct: 423 HCRNCGVCICASCSKT-WSHKSIPETYNMK-NEKNVKVCKTCHFLSYKFRQTLLDGHYEEAVSLFHTGNINLRCQFYSTDGEASYPVHCAAEGGNIQLLQWLVDIHFCPIKQAGSGSKGKKSRKASTALIQTSKGRTVLDIAMTNQRVDILRYLVVDKGICIYDNVKDLKTSLGALEAVLNVLPAPGDFDYYLNERNRSGRGSSNEEERIIMAEAMGHESLAIVPSPSSSRLTQFALDLRSEEQKTEEDESKLASTSVDSTTVPDACILCYENTIDCVITPCGHQICCLKCSENLSTCPVCNA 723 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig818.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig818.27.1 >prot_P-littoralis_Contig818.27.1 ID=prot_P-littoralis_Contig818.27.1|Name=mRNA_P-littoralis_Contig818.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=333bp MEARERLSAEGGTSAQGKGEGCPIVRGEPGSNGVCIAVNGVLRCILCQSNback to top mRNA from alignment at P-littoralis_Contig818:100791..109218- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig818.27.1 ID=mRNA_P-littoralis_Contig818.27.1|Name=mRNA_P-littoralis_Contig818.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8428bp|location=Sequence derived from alignment at P-littoralis_Contig818:100791..109218- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig818:100791..109218- >mRNA_P-littoralis_Contig818.27.1 ID=mRNA_P-littoralis_Contig818.27.1|Name=mRNA_P-littoralis_Contig818.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=999bp|location=Sequence derived from alignment at P-littoralis_Contig818:100791..109218- (Pylaiella littoralis U1_48)back to top |