prot_P-littoralis_Contig818.20.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig818.20.1
Unique Nameprot_P-littoralis_Contig818.20.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length145
Homology
BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Match: A0A6H5JYA8_9PHAE (Sm domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYA8_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 4.150e-48
Identity = 77/82 (93.90%), Postives = 78/82 (95.12%), Query Frame = 0
Query:   63 PAQTGGGKRSPSDFLKTVLGRSVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRRR 144
            PAQTGGGKRSPSDFLKTVLGR VVVKLNSGIDYRGVL CLDGYMNIAMEQTEEYVNGQLKA +GDCFIRGNNVLYIS QRRR
Sbjct:   64 PAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 145          
BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Match: A0A7S2ATC3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ATC3_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.260e-42
Identity = 70/75 (93.33%), Postives = 70/75 (93.33%), Query Frame = 0
Query:   70 KRSPSDFLKTVLGRSVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRRR 144
            K  PSDFLKTVLGR VVVKLNSG DYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISA RRR
Sbjct:   33 KCQPSDFLKTVLGRPVVVKLNSGTDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISASRRR 107          
BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Match: A0A836CMP0_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMP0_9STRA)

HSP 1 Score: 144 bits (362), Expect = 8.500e-42
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 0
Query:   71 RSPSDFLKTVLGRSVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRRR 144
            +SPSDFLK VLGRSV+VKLNSG+DYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYIS  +RR
Sbjct:   44 KSPSDFLKGVLGRSVIVKLNSGVDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISTTKRR 117          
BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Match: A0A7S2UQ42_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQ42_9STRA)

HSP 1 Score: 142 bits (357), Expect = 3.090e-41
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 0
Query:   70 KRSPSDFLKTVLGRSVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRRR 144
            KRSPSDFLK+VLGR V V+LNSG DYRGVLACLDGYMNIAMEQTEEYV+GQLKAKYGDCFIRGNNVLYIS Q+RR
Sbjct:   28 KRSPSDFLKSVLGRPVSVRLNSGTDYRGVLACLDGYMNIAMEQTEEYVDGQLKAKYGDCFIRGNNVLYISTQKRR 102          
BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Match: A0A7S2IZG2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IZG2_9EUKA)

HSP 1 Score: 141 bits (355), Expect = 6.830e-41
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 0
Query:   70 KRSPSDFLKTVLGRSVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRRR 144
            K +PSDFLKTVLGR VVVKLNSG+DYRGVLACLDGYMNIAMEQTEEYV+GQLKAKYGD FIRGNNVLYIS Q+RR
Sbjct:   30 KSNPSDFLKTVLGRPVVVKLNSGVDYRGVLACLDGYMNIAMEQTEEYVDGQLKAKYGDTFIRGNNVLYISTQKRR 104          
BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Match: A0A7S0KWV0_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KWV0_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.900e-40
Identity = 66/75 (88.00%), Postives = 72/75 (96.00%), Query Frame = 0
Query:   70 KRSPSDFLKTVLGRSVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRRR 144
            KRSPSDFLK+VLGR V V+LNSG +YRGVLACLDGYMNIAMEQTEEYV+GQLKAKYGDCFIRGNNVLYISAQ+R+
Sbjct:   53 KRSPSDFLKSVLGRPVKVRLNSGTEYRGVLACLDGYMNIAMEQTEEYVDGQLKAKYGDCFIRGNNVLYISAQKRK 127          
BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Match: A0A7R9YDM9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDM9_9STRA)

HSP 1 Score: 138 bits (347), Expect = 9.370e-40
Identity = 65/80 (81.25%), Postives = 74/80 (92.50%), Query Frame = 0
Query:   64 AQTGGGKRSPSDFLKTVLGRSVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRR 143
            A+T   K +PSDFL++VLGR VVVKLNS ++YRG+LACLDG+MNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQ+R
Sbjct:   20 AKTDVQKSNPSDFLRSVLGRPVVVKLNSTVEYRGILACLDGFMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQKR 99          
BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Match: V4A3S6_LOTGI (Sm domain-containing protein n=19 Tax=Protostomia TaxID=33317 RepID=V4A3S6_LOTGI)

HSP 1 Score: 137 bits (345), Expect = 1.040e-39
Identity = 63/75 (84.00%), Postives = 70/75 (93.33%), Query Frame = 0
Query:   70 KRSPSDFLKTVLGRSVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRRR 144
            K++PSDFLK ++GR VVVKLNSG+DYRGVLACLDGYMNIA+EQTEEYVNGQLK KYGD FIRGNNVLYIS Q+RR
Sbjct:    4 KQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR 78          
BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Match: LSM6_HUMAN (U6 snRNA-associated Sm-like protein LSm6 n=406 Tax=Sarcopterygii TaxID=8287 RepID=LSM6_HUMAN)

HSP 1 Score: 137 bits (345), Expect = 1.070e-39
Identity = 63/75 (84.00%), Postives = 70/75 (93.33%), Query Frame = 0
Query:   70 KRSPSDFLKTVLGRSVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRRR 144
            K++PSDFLK ++GR VVVKLNSG+DYRGVLACLDGYMNIA+EQTEEYVNGQLK KYGD FIRGNNVLYIS Q+RR
Sbjct:    5 KQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR 79          
BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Match: K4FT18_CALMI (U6 snRNA-associated Sm-like protein LSm6 n=12 Tax=Vertebrata TaxID=7742 RepID=K4FT18_CALMI)

HSP 1 Score: 137 bits (345), Expect = 1.070e-39
Identity = 63/75 (84.00%), Postives = 70/75 (93.33%), Query Frame = 0
Query:   70 KRSPSDFLKTVLGRSVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRRR 144
            K++PSDFLK ++GR VVVKLNSG+DYRGVLACLDGYMNIA+EQTEEYVNGQLK KYGD FIRGNNVLYIS Q+RR
Sbjct:    5 KQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR 79          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYA8_9PHAE4.150e-4893.90Sm domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S2ATC3_9STRA2.260e-4293.33Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A836CMP0_9STRA8.500e-4290.54Sm domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7S2UQ42_9STRA3.090e-4189.33Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2IZG2_9EUKA6.830e-4189.33Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S0KWV0_9STRA1.900e-4088.00Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A7R9YDM9_9STRA9.370e-4081.25Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
V4A3S6_LOTGI1.040e-3984.00Sm domain-containing protein n=19 Tax=Protostomia ... [more]
LSM6_HUMAN1.070e-3984.00U6 snRNA-associated Sm-like protein LSm6 n=406 Tax... [more]
K4FT18_CALMI1.070e-3984.00U6 snRNA-associated Sm-like protein LSm6 n=12 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 16..36
NoneNo IPR availableGENE3D2.30.30.100coord: 64..143
e-value: 2.1E-30
score: 106.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..38
NoneNo IPR availablePANTHERPTHR11021:SF1U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM6coord: 70..143
NoneNo IPR availableCDDcd01726LSm6coord: 72..139
e-value: 3.4191E-43
score: 134.957
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 75..140
e-value: 6.4E-21
score: 85.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 75..139
e-value: 2.9E-18
score: 65.3
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 70..143
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 73..140

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig818contigP-littoralis_Contig818:71893..74059 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig818.20.1mRNA_P-littoralis_Contig818.20.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig818 71815..74129 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig818.20.1 ID=prot_P-littoralis_Contig818.20.1|Name=mRNA_P-littoralis_Contig818.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=145bp
MEDSTTPPPPPPPKETEDAVDEKENGEAEEEEEEEDAPMPPAPAAPPAAA
PAATVAAVAVAAPAQTGGGKRSPSDFLKTVLGRSVVVKLNSGIDYRGVLA
CLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016487Lsm6/sSmF
IPR010920LSM_dom_sf