mRNA_P-littoralis_Contig818.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig818.29.1
Unique NamemRNA_P-littoralis_Contig818.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig818.29.1 vs. uniprot
Match: D7FYF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF5_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 8.120e-12
Identity = 69/124 (55.65%), Postives = 78/124 (62.90%), Query Frame = 2 
Query: 1001 PHRRSHGRLDPVSAAAAATRPQPRSPAIGRVVPPIDDSLTAEQAQAIIDAADMAAAEAVVAAAEAQEAINVAAAVSPARTP--LTRSLTASAEGAALAPAAAPRSPRHRPVTIRHDSAVARTLR 1366
            P  R HGRLD  SAAAAA RP+    A+       ++SLTAEQAQAIIDAADMAAAEAVVAA EAQEAI VAAA SP+RT   +  S TA+  G  +A AA    P         +SAV R LR
Sbjct:  283 PRPRLHGRLDATSAAAAAERPR----AVTARGVSQEESLTAEQAQAIIDAADMAAAEAVVAAVEAQEAIAVAAATSPSRTAPGIVVSATAAGTGTGIAAAATVSQP---------ESAVRRILR 393
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig818.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYF5_ECTSI8.120e-1255.65FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig818contigP-littoralis_Contig818:109235..112006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1493
Hectar predicted targeting categoryother localisation
Exons2
Cds size1155
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791670.2557125-CDS-P-littoralis_Contig818:109234..1103891680791670.2557125-CDS-P-littoralis_Contig818:109234..110389Pylaiella littoralis U1_48CDSP-littoralis_Contig818 109235..110389 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791670.267731-UTR-P-littoralis_Contig818:110389..1105971680791670.267731-UTR-P-littoralis_Contig818:110389..110597Pylaiella littoralis U1_48UTRP-littoralis_Contig818 110390..110597 -
1680791670.2776017-UTR-P-littoralis_Contig818:111877..1120061680791670.2776017-UTR-P-littoralis_Contig818:111877..112006Pylaiella littoralis U1_48UTRP-littoralis_Contig818 111878..112006 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig818.29.1prot_P-littoralis_Contig818.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig818 109235..110389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig818.29.1

>prot_P-littoralis_Contig818.29.1 ID=prot_P-littoralis_Contig818.29.1|Name=mRNA_P-littoralis_Contig818.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=385bp
MSSGPQQQQQVVETSAGLLTEEGWQPQQPQATGSDSVPPPPPLPPAPQEP
APSVSTAITTTTTATTAEPPPPLPSVSQEPAPPVPTTTTTTTTRTGEQHL
FVPLPLEADTLGSEERDAGDSASAAIETSEAAAAAAAAARGSSGSSPRNL
GGAGSSGATSTSAGREAVVATAQSTAAAAAAVAAVARQEAREATVPFEVM
TVAAARPPPYNSLERLDETRQPHRRSHGRLDPVSAAAAATRPQPRSPAIG
RVVPPIDDSLTAEQAQAIIDAADMAAAEAVVAAAEAQEAINVAAAVSPAR
TPLTRSLTASAEGAALAPAAAPRSPRHRPVTIRHDSAVARTLREIESTEA
AAALSSRPSRDARTATAAGRLNETGAAAAAAAAAG
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mRNA from alignment at P-littoralis_Contig818:109235..112006-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig818.29.1 ID=mRNA_P-littoralis_Contig818.29.1|Name=mRNA_P-littoralis_Contig818.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2772bp|location=Sequence derived from alignment at P-littoralis_Contig818:109235..112006- (Pylaiella littoralis U1_48)
CAGGAGAGTGAGAGAGAGAATGCCAACGAGGCCTTGACGTGGTGAGAAAC
AAGCAGGGGAGGGAGATAAAGAGGCAGAGCGAGGGCGAGAGAGGGATATT
CTGCCCACTAGCGCTGGAGTTCAGCGAAGGTGAGCTTTCCGCCCTCCTTG
CTTCCTGTGAATTTTATGGGTCATCAACTACACTCCCGGATACGAAGTAA
TGTTGGCGAAGGAAAAAGTGTGACCACGGCGGTGGTGGCGGGTGACAGCA
GACGACGTATAAAGTACAACCAGGAATGGCGCACCGGTATTATGTTCAAG
TGCGACTGACTCAGCGGCTTTGGGCTTGCTGCCGGCTTGTAGTGGCTGGA
GGCCGGAGGCTGCGCACCACGGTCATGTGCCGTATGTCTTGCGGCGATAT
ACTTGTATCGTTGCCAGTTGCACGTTCGCGAGGGCACTCATGTGTTTCTG
CAGACGAGGCCCTTTTTACTCTCCTTCTTTCTCTGCACTACTGATTTTCC
GGCATGTTCTCATTTCCCAACAGAACAACAGCAATCTTACCTAGCTGTAT
ACGTTTTCGCAACGCGACGCTTAGAAGCTTGAACCGTCGGCGGTTTATTC
TACGCAGACCTTCAGATCAACACGAGGTATTTGGCCCAGATCGGGTACTG
AGCACACGAGCCTCTGGCACATCCCAAATCCCTCCGACCCAAGTAGAGAC
CTGTCTCGGGGTTAGGATAGGTAAAGGGGATAGAGTTGTGGTGAGCGTCT
GTGTGTTCGTATGTTTGTGTATGTTGTGTGCATGTGATTCTGGGCGCCAT
TCTACACCGGCATATGCATGTGGGGGCACCAGCCGGGGTCCGGGTTATAC
AGGAGGAAGGTAGACACAAGATCTATTTCTTTTCATGAGTGTGGAGAGGG
AAAATTGAAAAGCCCTGAAGAAGAAAAACGCCCGGTGGTTTTGGGTTTCT
GGCCAAGCGCGACTACCCAATAAAATATAAAATATCTCCACCTGCATTTA
AAGATAGTAGAAGTACCGCATACTTGCTGCGCCGCCTTCGGCCACACAAG
ACGGGGTGCCTTGTCGTGGGGTTTGTCCTCCCAAAAGTAGCCTCGCTGTG
CGGACTCTCTTCGATCCGCCAATCTAATTTCCAATCAAACCCGAAGGATT
TCTACAGCTCAACCTCCTTCCCTTTTGTTTGCGGCCTCGCTATAGGGGCC
TCCACCTTTGTAGACTCATCACCTAGTTCAAGTACTGCTGTACAGTAGCT
GTGTCGTGCGGGATCTTTCGAGATATATTCCTGACCGTGCGACCGGTTGC
TGGCTGTGTTTTTCTACTCAGAGGGTTGCGCAGCGTACACGAACACGCAC
TCCTCACAACCCATCGCCCGCCCCTTCTAACGTTTCACTCTGCCTCCGTG
CTTGTGCAGGTCCTTTGGAGGCCCAACCTCACTAACAGACAGAACAAGGC
TGGGCGAAGACAAAGGTCATGCACGAGAGTGCCACCGCGTGGAGCACACC
TTGTCCCTGGAGCTCCTTAAGTTGGTGATGAACTAGTGGCAGCAGTAGCG
CCAGCAGAAGCAGAAGAAACAGCTAGCGTAGGCCTGCTCTCGTTCGGAGT
GCGTCCTTTTCCCGACAATGTCCAGCGGACCACAGCAGCAGCAGCAGGTC
GTCGAGACGTCAGCAGGTTTGCTGACGGAGGAGGGGTGGCAGCCACAGCA
GCCACAGGCAACGGGAAGCGACTCGGTACCACCACCTCCACCTCTCCCAC
CAGCGCCCCAGGAGCCGGCGCCTTCAGTATCGACGGCAATAACAACGACG
ACAACAGCAACAACAGCGGAACCACCTCCACCTCTCCCATCAGTGTCCCA
GGAGCCGGCGCCTCCAGTCCCGACGACAACAACAACGACAACAACAAGAA
CAGGCGAACAACACTTATTCGTACCGTTGCCGTTGGAAGCCGATACTTTG
GGAAGTGAGGAGCGTGATGCAGGGGATTCAGCATCAGCAGCGATAGAAAC
ATCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCTAGAGGGTCCTCGGGTT
CAAGTCCGCGTAACCTGGGAGGAGCGGGGTCGTCAGGAGCAACGTCAACC
TCAGCAGGAAGGGAGGCGGTGGTAGCCACGGCGCAATCAACAGCGGCAGC
AGCGGCGGCAGTAGCAGCAGTCGCAAGACAGGAAGCAAGAGAAGCCACCG
TTCCTTTTGAAGTAATGACGGTGGCGGCAGCGAGGCCACCACCTTATAAT
TCGCTCGAACGACTCGACGAAACACGACAGCCACATCGGCGTTCGCATGG
ACGACTTGACCCGGTCTCGGCAGCGGCGGCAGCGACTAGACCACAACCAC
GATCACCGGCAATAGGAAGGGTTGTGCCGCCGATAGACGACTCTCTCACT
GCAGAGCAGGCGCAGGCTATCATCGACGCGGCCGACATGGCGGCCGCTGA
AGCCGTTGTTGCGGCCGCTGAAGCCCAGGAGGCGATCAATGTTGCGGCGG
CAGTTTCACCGGCGAGGACGCCGTTGACAAGATCACTGACTGCGTCGGCG
GAGGGTGCGGCGTTAGCACCGGCTGCTGCACCTAGGAGCCCACGGCACCG
GCCGGTGACCATACGCCACGACTCCGCGGTGGCGCGCACGCTGCGGGAGA
TAGAATCGACAGAAGCTGCGGCGGCGCTTTCGTCGCGGCCGTCACGGGAC
GCACGGACGGCGACGGCCGCTGGCCGGCTAAATGAGACCGGTGCGGCGGC
GGCGGCGGCAGCGGCGGCAGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig818:109235..112006-

>mRNA_P-littoralis_Contig818.29.1 ID=mRNA_P-littoralis_Contig818.29.1|Name=mRNA_P-littoralis_Contig818.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1155bp|location=Sequence derived from alignment at P-littoralis_Contig818:109235..112006- (Pylaiella littoralis U1_48)
ATGTCCAGCGGACCACAGCAGCAGCAGCAGGTCGTCGAGACGTCAGCAGG
TTTGCTGACGGAGGAGGGGTGGCAGCCACAGCAGCCACAGGCAACGGGAA
GCGACTCGGTACCACCACCTCCACCTCTCCCACCAGCGCCCCAGGAGCCG
GCGCCTTCAGTATCGACGGCAATAACAACGACGACAACAGCAACAACAGC
GGAACCACCTCCACCTCTCCCATCAGTGTCCCAGGAGCCGGCGCCTCCAG
TCCCGACGACAACAACAACGACAACAACAAGAACAGGCGAACAACACTTA
TTCGTACCGTTGCCGTTGGAAGCCGATACTTTGGGAAGTGAGGAGCGTGA
TGCAGGGGATTCAGCATCAGCAGCGATAGAAACATCAGAAGCAGCAGCAG
CAGCAGCAGCAGCAGCTAGAGGGTCCTCGGGTTCAAGTCCGCGTAACCTG
GGAGGAGCGGGGTCGTCAGGAGCAACGTCAACCTCAGCAGGAAGGGAGGC
GGTGGTAGCCACGGCGCAATCAACAGCGGCAGCAGCGGCGGCAGTAGCAG
CAGTCGCAAGACAGGAAGCAAGAGAAGCCACCGTTCCTTTTGAAGTAATG
ACGGTGGCGGCAGCGAGGCCACCACCTTATAATTCGCTCGAACGACTCGA
CGAAACACGACAGCCACATCGGCGTTCGCATGGACGACTTGACCCGGTCT
CGGCAGCGGCGGCAGCGACTAGACCACAACCACGATCACCGGCAATAGGA
AGGGTTGTGCCGCCGATAGACGACTCTCTCACTGCAGAGCAGGCGCAGGC
TATCATCGACGCGGCCGACATGGCGGCCGCTGAAGCCGTTGTTGCGGCCG
CTGAAGCCCAGGAGGCGATCAATGTTGCGGCGGCAGTTTCACCGGCGAGG
ACGCCGTTGACAAGATCACTGACTGCGTCGGCGGAGGGTGCGGCGTTAGC
ACCGGCTGCTGCACCTAGGAGCCCACGGCACCGGCCGGTGACCATACGCC
ACGACTCCGCGGTGGCGCGCACGCTGCGGGAGATAGAATCGACAGAAGCT
GCGGCGGCGCTTTCGTCGCGGCCGTCACGGGACGCACGGACGGCGACGGC
CGCTGGCCGGCTAAATGAGACCGGTGCGGCGGCGGCGGCGGCAGCGGCGG
CAGGG
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