mRNA_P-littoralis_Contig817.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig817.21.1
Unique NamemRNA_P-littoralis_Contig817.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig817.21.1 vs. uniprot
Match: A0A6H5JVW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW3_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 3.790e-29
Identity = 71/111 (63.96%), Postives = 79/111 (71.17%), Query Frame = -2 
Query:    5 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWGGFGDGPAL 337
            +AP D    V  VAS+S       + E GPDL+ GTLL+D +S+TTRV LHGGPTATS     ALLD+GSPASFVSDSVV  MIA GALTA  VR S SR WGGFGDGPAL
Sbjct:  287 EAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSNSYTTRVLLHGGPTATSQLARVALLDSGSPASFVSDSVVTAMIAAGALTAGSVRVSPSRRWGGFGDGPAL 397
[Close]
BLAST of mRNA_P-littoralis_Contig817.21.1 vs. uniprot
Match: A0A6H5JFD5_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD5_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 8.040e-29
Identity = 71/111 (63.96%), Postives = 77/111 (69.37%), Query Frame = -2 
Query:    5 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWGGFGDGPAL 337
            DAP D    V  VAS+S       + E GPDL+ GTLL+D DS+TTRV LHGGPTATS     ALLD+GSPASFVSDSVV  MIA GALTA  VR    R WGGFGDGPAL
Sbjct:  583 DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLDSGSPASFVSDSVVTAMIAAGALTAGSVRVLPFRRWGGFGDGPAL 693
[Close]
BLAST of mRNA_P-littoralis_Contig817.21.1 vs. uniprot
Match: A0A6H5KUS6_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS6_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 9.650e-28
Identity = 66/107 (61.68%), Postives = 74/107 (69.16%), Query Frame = -2 
Query:   17 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWGGFGD 337
            DAP D    V  VAS+S       + E GPDL+ GTLL+D DS+TTRV LHGGPTATS     ALL++GSP SFVSDSVV  MIA G+LTA  VR S SR WGGFGD
Sbjct:  167 DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLNSGSPVSFVSDSVVTAMIAAGSLTAGSVRVSPSRRWGGFGD 273
[Close]
BLAST of mRNA_P-littoralis_Contig817.21.1 vs. uniprot
Match: A0A6H5L323_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L323_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.510e-27
Identity = 69/111 (62.16%), Postives = 77/111 (69.37%), Query Frame = -2 
Query:    5 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWGGFGDGPAL 337
            DAP D    V  VA++S       + E GPDL+ GTLL+D  S+TTRV LHGGPTATS     ALLD+GSPASFVSDSVV  MI  GALT+  VR S SR WGGFGDGPAL
Sbjct:  288 DAPGDHAPGVHLVAATSVCQDHPPLLEHGPDLVGGTLLLDSASYTTRVLLHGGPTATSQLPRVALLDSGSPASFVSDSVVTAMIDAGALTSGSVRVSPSRRWGGFGDGPAL 398
[Close]
BLAST of mRNA_P-littoralis_Contig817.21.1 vs. uniprot
Match: A0A6H5JK47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK47_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.550e-27
Identity = 69/111 (62.16%), Postives = 77/111 (69.37%), Query Frame = -2 
Query:    5 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWGGFGDGPAL 337
            DAP D    V  VA++S       + E GPDL+ GTLL+D  S+TTRV LHGGPTATS     ALLD+GSPASFVSDSVV  MI  GALT+  VR S SR WGGFGDGPAL
Sbjct:  335 DAPGDHAPGVHLVAATSVCQDHPPLLEHGPDLVGGTLLLDSASYTTRVLLHGGPTATSQLPRVALLDSGSPASFVSDSVVTAMIDAGALTSGSVRVSPSRRWGGFGDGPAL 445
[Close]
BLAST of mRNA_P-littoralis_Contig817.21.1 vs. uniprot
Match: A0A6H5KUS0_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS0_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 7.020e-27
Identity = 68/111 (61.26%), Postives = 76/111 (68.47%), Query Frame = -2 
Query:    5 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWGGFGDGPAL 337
            DAP D    V  VA++S       + E GPDL+ GTLL+D  S+TT V LHGGPTATS     ALLD+GSPASFVSDSVV  MI  GALT+  VR S SR WGGFGDGPAL
Sbjct:  288 DAPGDHAPGVHLVAATSVCQDHPPLLEHGPDLVGGTLLLDSASYTTWVLLHGGPTATSQLPRVALLDSGSPASFVSDSVVTAMIDAGALTSGSVRVSPSRRWGGFGDGPAL 398
[Close]
BLAST of mRNA_P-littoralis_Contig817.21.1 vs. uniprot
Match: A0A6H5L559_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L559_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.280e-24
Identity = 65/104 (62.50%), Postives = 70/104 (67.31%), Query Frame = -2 
Query:    5 FEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWGGFGDGPAL 316
              V  VAS+S       + + GPDL+  TLL+D DS TTRV LHGGPTATS     ALLD G PASFVSDSVV  MIA GALTA  VR S SR WGGFGDG AL
Sbjct:  142 LNVHLVASTSGCADQPPLLKHGPDLVGDTLLLDSDSSTTRVLLHGGPTATSQLTRVALLDPGFPASFVSDSVVTTMIAAGALTAGSVRVSPSRRWGGFGDGLAL 245
[Close]
BLAST of mRNA_P-littoralis_Contig817.21.1 vs. uniprot
Match: A0A6H5JSI4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI4_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 4.990e-23
Identity = 64/103 (62.14%), Postives = 69/103 (66.99%), Query Frame = -2 
Query:   29 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWG 337
            DAP D    V  VAS+S       + E GPDL+SGTLL+D DS TTRV LHGGPTATS     ALLD+GSPASFVSDSVV  MIA GAL    VR S SR WG
Sbjct:  322 DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVSGTLLLDSDSCTTRVLLHGGPTATSQLARVALLDSGSPASFVSDSVVTAMIAAGALKTGSVRVSPSRRWG 424
[Close]
BLAST of mRNA_P-littoralis_Contig817.21.1 vs. uniprot
Match: A0A6H5K8W4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W4_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.600e-21
Identity = 61/100 (61.00%), Postives = 68/100 (68.00%), Query Frame = -2 
Query:   38 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSR 337
            DAP D    V  VAS+S       + E GPDL+ GTLL+D DS+TTRV LHGGPTATS     ALLD+GSP SFVSDSVV  MIA GALTA  V  S+SR
Sbjct:  804 DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLDSGSPTSFVSDSVVTAMIAAGALTAGSVVPSSSR 903
[Close]
BLAST of mRNA_P-littoralis_Contig817.21.1 vs. uniprot
Match: A0A6H5JDD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD1_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.900e-20
Identity = 58/91 (63.74%), Postives = 64/91 (70.33%), Query Frame = -2 
Query:   65 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTA 337
            DAP D    V  VAS+S       + E GPDL+ GTLL+D DS+TTRV LHGGPTATS     ALLD+GSPASFVSDSVV  MIA GALTA
Sbjct:  287 DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLDSGSPASFVSDSVVTAMIAAGALTA 377
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig817.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5JVW3_9PHAE3.790e-2963.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFD5_9PHAE8.040e-2963.96NADAR domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5KUS6_9PHAE9.650e-2861.68NADAR domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5L323_9PHAE1.510e-2762.16Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JK47_9PHAE1.550e-2762.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUS0_9PHAE7.020e-2761.26NADAR domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5L559_9PHAE2.280e-2462.50Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JSI4_9PHAE4.990e-2362.14Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K8W4_9PHAE2.600e-2161.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JDD1_9PHAE1.900e-2063.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig817contigP-littoralis_Contig817:116282..116976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size695
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791669.6809757-UTR-P-littoralis_Contig817:116281..1166221680791669.6809757-UTR-P-littoralis_Contig817:116281..116622Pylaiella littoralis U1_48UTRP-littoralis_Contig817 116282..116622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791669.692644-CDS-P-littoralis_Contig817:116622..1169761680791669.692644-CDS-P-littoralis_Contig817:116622..116976Pylaiella littoralis U1_48CDSP-littoralis_Contig817 116623..116976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig817.21.1prot_P-littoralis_Contig817.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig817 116623..116976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig817.21.1

>prot_P-littoralis_Contig817.21.1 ID=prot_P-littoralis_Contig817.21.1|Name=mRNA_P-littoralis_Contig817.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=118bp
MCPEAWSEAGVDGAEDPKAGTETGVDAEEDPKLTEVVVDAEEDPISLSEE
GVDGAEDISRETGGWISKMCRRGVFEVDGGAGEMEDEGGCFCNKRRTFIN
VSPSKFLPFHVEGWAALG
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mRNA from alignment at P-littoralis_Contig817:116282..116976+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig817.21.1 ID=mRNA_P-littoralis_Contig817.21.1|Name=mRNA_P-littoralis_Contig817.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=695bp|location=Sequence derived from alignment at P-littoralis_Contig817:116282..116976+ (Pylaiella littoralis U1_48)
TTTCCAAAGCAGGTCCATCACCAAAACCGCCCCAACTACGAGAGGTGGAG
TGGCGGACACAAGAGGCGGTAAGAGCACCGCCCGCGATCATATTTTGGAC
AACGGAGTCGCTCACAAAGGAAGCAGGGGATCCAGTGTCCAAAAGGGCGG
TGGTTAGAGCAGAAGAAGTGGCAGTTGGGCCGCCGTGAAGCCTCACTCGT
GTAGTGAAAGAGTCGCAATCCATCAAAAGGGTACCACTGATGAGGTCGGG
TCCTTGTTCAGGGATGAGATGACTGCGGTTCGTTGTAGACGAGGAAGCGA
CGTGGAGAACTTCGAAAGGTTGATCGTCCGGTGCATCTTGGATGTGTCCA
GAGGCTTGGTCGGAAGCAGGCGTAGACGGCGCAGAAGACCCAAAAGCAGG
AACGGAAACAGGCGTAGATGCAGAAGAAGACCCAAAGTTGACGGAGGTAG
TGGTAGACGCAGAAGAAGACCCAATTTCGTTGTCGGAAGAGGGGGTAGAC
GGCGCAGAAGACATCTCACGAGAAACTGGAGGCTGGATCTCGAAGATGTG
TCGACGGGGGGTGTTCGAAGTAGACGGCGGTGCTGGGGAAATGGAAGATG
AGGGAGGATGTTTCTGCAACAAGCGGCGAACTTTCATCAACGTTTCCCCG
AGCAAATTTTTACCCTTCCATGTAGAAGGATGGGCAGCGTTGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig817:116282..116976+

>mRNA_P-littoralis_Contig817.21.1 ID=mRNA_P-littoralis_Contig817.21.1|Name=mRNA_P-littoralis_Contig817.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig817:116282..116976+ (Pylaiella littoralis U1_48)
ATGTGTCCAGAGGCTTGGTCGGAAGCAGGCGTAGACGGCGCAGAAGACCC
AAAAGCAGGAACGGAAACAGGCGTAGATGCAGAAGAAGACCCAAAGTTGA
CGGAGGTAGTGGTAGACGCAGAAGAAGACCCAATTTCGTTGTCGGAAGAG
GGGGTAGACGGCGCAGAAGACATCTCACGAGAAACTGGAGGCTGGATCTC
GAAGATGTGTCGACGGGGGGTGTTCGAAGTAGACGGCGGTGCTGGGGAAA
TGGAAGATGAGGGAGGATGTTTCTGCAACAAGCGGCGAACTTTCATCAAC
GTTTCCCCGAGCAAATTTTTACCCTTCCATGTAGAAGGATGGGCAGCGTT
GGGG
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