mRNA_P-littoralis_Contig816.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig816.14.1
Unique NamemRNA_P-littoralis_Contig816.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig816.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig816contigP-littoralis_Contig816:72900..79537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1062
Hectar predicted targeting categoryother localisation
Exons3
Cds size498
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791669.4181993-UTR-P-littoralis_Contig816:72899..732981680791669.4181993-UTR-P-littoralis_Contig816:72899..73298Pylaiella littoralis U1_48UTRP-littoralis_Contig816 72900..73298 -
1680791669.4354064-UTR-P-littoralis_Contig816:78193..783571680791669.4354064-UTR-P-littoralis_Contig816:78193..78357Pylaiella littoralis U1_48UTRP-littoralis_Contig816 78194..78357 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791669.4476755-CDS-P-littoralis_Contig816:78357..784351680791669.4476755-CDS-P-littoralis_Contig816:78357..78435Pylaiella littoralis U1_48CDSP-littoralis_Contig816 78358..78435 -
1680791669.4599106-CDS-P-littoralis_Contig816:79117..795371680791669.4599106-CDS-P-littoralis_Contig816:79117..79537Pylaiella littoralis U1_48CDSP-littoralis_Contig816 79118..79537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig816.14.1prot_P-littoralis_Contig816.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig816 78358..79537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig816.14.1

>prot_P-littoralis_Contig816.14.1 ID=prot_P-littoralis_Contig816.14.1|Name=mRNA_P-littoralis_Contig816.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=166bp
QDGWRTFASVEQDLDLDDNAVSSSLRNACIGVKGKQLRKDLWDRQGKKGV
YRRLSRQRPHRVWWLAFCGEGNPAPDISPPRDFDERVRMGLLVAGEDAVD
EDRSAAAQEKETWAAGGIARARDEEGRCCWGGSDRQSSPKVISSSPTGVN
NSSTADRGNGLQTCS*
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mRNA from alignment at P-littoralis_Contig816:72900..79537-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig816.14.1 ID=mRNA_P-littoralis_Contig816.14.1|Name=mRNA_P-littoralis_Contig816.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6638bp|location=Sequence derived from alignment at P-littoralis_Contig816:72900..79537- (Pylaiella littoralis U1_48)
CAGGATGGTTGGCGTACGTTCGCAAGCGTTGAGCAAGATCTAGACCTTGA
CGACAACGCTGTATCCAGCTCACTACGCAATGCATGTATCGGAGTAAAAG
GAAAACAACTCAGGAAGGACCTGTGGGACAGACAAGGGAAAAAGGGCGTG
TATCGACGCCTTAGTAGACAGAGACCACATAGGGTTTGGTGGCTTGCGTT
TTGTGGAGAGGGGAACCCTGCCCCAGATATTAGCCCTCCACGGGACTTCG
ACGAAAGGGTTAGGATGGGATTGCTGGTTGCTGGAGAGGATGCCGTAGAT
GAGGATCGCAGTGCCGCTGCTCAGGAGAAGGAGACGTGGGCGGCTGGCGG
TATCGCCAGAGCACGAGATGAGGAAGGCCGCTGCTGCTGGGGAGGAAGTG
ACCGACAAAGTTCGCCAAAGGTGCGGTCCTTGTCGAAATGGTTCATTTTT
TGTGTATGATTGATAAGTCTGTCCTGCATTGGCAATGGTACGTTGATGTT
ACGCTTTCGTGTCCGTAATTTGGTTAATTGTAGAGCTTCCCCTCTAATAT
CAAGTACTTGTAGAATAGCTAGAGACAGCGAGAGACATTGCCGTATGAGA
GGGTTAGTAAGATACGACACCTGATGAAGCGATTTAAAATTACAGATACT
CCACACCGAAGAGAGCATCACCATCAAACGATACGTTTACTCTCGATGCG
TTTCGAACACGCCCTTTACGGCACCGACACATGTAATGAATCGTGCTTTA
TATATCGGTCCAGGGGGGTCCGTCGTATCTTACGGCACCCACAGAACACA
CGCGTCACCGCCACACACCACGCTGTACAGCTGTATTCTGCTGTACAGCT
GTATTCTACTGTACTGCTGCTGCTGTACTGCTGCTGCTGCTTCGCTGCTT
GTTCTGCTGTACTGCTGCTGCTGGGATGTGTAATGATGTATCATCTTGAA
GTATCATACTCTCACTCGAGACGGAAAGCATAGCAGTGGCACAGTTACAA
CAACGCAAGAACAGAAGTACAGCAAGACAAGAGCGTTGTGTGTGCGGCAG
GCTGCGGTGTGATGTGTAAATGCTGTGATGCGATATTTCAACACGAAAAC
AGGTGATATCATCATCACCTACAGGCGTCAACAACAGTAGTACAGCCGAC
CGTGGGAACGGACTGCAGACATGCTCGTAATGCTGGTGTGGTGTCGCTGG
CGTAGGGGTGGAAGGCTCGGGGGAAGCAGCAGCCGAGGCTGATAATGTCG
TGAGGGAAGCAGCGGCAGGTGGGCGGACTGCTGCTGCCGTTGAGCGTGCT
GCCAAAGGCAAACAACCTGCAAGGGGTGGGAAGCTTCCAAAGGAGTGAGT
CCGTGTGACCTTTTTGTTTTGACTCTTTGTGCGCGGGCCGTCGCACATTG
TAACCCTAGGGTAGATGTGACTGTACACCGGGGTTTTTTGTTGGATAGAG
GACAGATGAAACTACATATGTGTGGCGTTGTTTTTTTTGTTGTTGTGGAT
AGACACAATGACATTGTTGTGTTATTGTTCTTGTGGATAAGCTCCTCTAC
TTGGACATGCCTTCGGACATGCCCGGTGCGGATGCTAAAGCCCGCGTGTC
GGTCGCTCGCTGCAAACCGTGTGCGAACTCGAGCGATAAAGACGACATGC
CCCGCTTTTTGCCAGCTGGCCTTACCCAGTATGTGCTCAACAACTACACC
AACAAATCGCCGCCTTACCACGTGACCGAGGATGATGTCTCGGCCACAGT
TCAGCGACTCGAAGTCGACTGCATCTTGTACTGTTTTTGTTTAGAAGATG
GGCAAAATAATACCGTTCAGTTTTTTTATCATTTGCGACACAGTAGATAA
AATCACCCCGTTCATATACTGTTTATTTTGTTGGAGTGGATAGACAAAAT
CACATCGTGCTTGTATAAAAGTTATACAAGTTACGATTTCGCTGATTGAT
CAGCATTTTCATTTATTTTTTTATTCTTACAACTAGACTGGCCCTAGGCC
GCTGACAGACCGGCATTTTGTGCTCTAGAGCTCTCACAGGCAAGGAATGA
AATCACTTGAAATTAGACTACGGCGGACCTCTGATTAGGATCATAACCGG
CATTTTTTGCTCTAGAGCTCTCACAGGCAAGGAATGAAATCACTTGCAAT
TAGACTACGGCGGACCTCTGATTTCGATCATATGGCATCCATGGATCATT
TTGGATGTTGATTGCACTCCTCGTACAGGTGTTGATTCCATTTCTCCTGC
ATTGTGTTGTTGTTGCCTTTACATTAAAAACCATATCATCACACTTGAAA
TTAGACCACGGCGGAACCTATAAATTCGATCATCTTGGGTCATTTGTCTT
TCCTTTCCTGTAACACCAAGTAGGTTGGTTTTGTGGCAGGCGCAGCTGGC
GGCACGTGGTCATATGATATTGGGTAATTTCGATCACACATTGGGTCGTT
TATCATTCCTGCATCATAGGACGGAGATCGTTTTGGATCATTTATCTTCC
CCTGTCATATCATCTACTCCAAATATGTCCCAGCAGACAACTGCTCTCTC
CGCTTTTTCTGCTGTACGAGTACGATATTGTCATCATCATCACATCTTCT
CATCTTTTCATCTGCGCATAGATATGCACATGAAATTAGACTACGGCGGA
CCTCTGATATGGATCATTTGGCATCCATGAATCATTTCGGGTGTTTATTC
CGTTCCTCCTGCATGTCACTTGAAATAAGCACACGGCGGAACCTTGCATT
ACGATCATCTTGGTTCATTCGTCCTTCCTCTTTTCCTGTACATACAGCAG
TATCATCATATGATATTGGGTAAAATTTCGATCACATTGGGTCGTTTATC
TTTCCTGCATCATAGGACGGAGATCGTTTTGGATCATTTATCTACCCCTG
TCATATCACATATATATATATACTCCATATATCACATCATTAGACACCTG
CTCTCTCTCCACTTTTTTTGCTGTACGAGTACGTTATTATTATCATCATC
ATCACATCTTCTCATCTTTTCATCTGGGCAGATCTGCTGTTGTTGTTTGT
TGGCGTTGACTTCGACCCACACTCTCATTTTGGATCACATCATATTGGAT
CAGTATGCTGACATCATCATCAGGAGATTATCCGCTAACAACAGCAGGAG
GAACAAACAGACCAGACTGGGGGACGCACTAAAAATCTCTCGCTTTTTGA
AAATGAATACAGAACTGCTGCATTTATTTACATCATCACATAATTTTGAA
TACTTATGCTTTCTTTGACTTCGACGTTCGACCCACACTCTGTGAAATGT
CCTGTCCGCGTGGTAGACACGCAGGCCTTCTGCATCACATCTCATCATCA
CCATCGTCCACAAGTCTGTGTGGTGTGCGTGTGGTGTTCACATCCGATCT
CAGGCAGTCTGTCCCGAGAGACTCTAATTGGGATTTCTATGGCATGTATC
CATCCCTTCCTCTGTAGGATTGGATCAATTGGATACATACACTACATCCA
TTCATAGTCTAATAATACACAGACCACGGCGGGAAACAGGAATGAATTCG
AAATCATCCACCCCTCCTCTGTATGATCCATACATATTGATTGCTACTCA
GACATAAAAAAAGTCTAATAAATAAAACAAATTCGATCGCCTATTATTAT
CATAGATCAGATTTTATTCTTCTGTACACGCAGCATCATGCGTGAACATC
TCAACAACAATAACAACAGCGTATGGTGTATGATACACATAATAATACTC
GGTTCGAAGTCTACATATTACTCTCGAACCTGTTATTTTTTTTCTGTATT
TTGTTTGGTACTCTGGCCACCACAGATGGTACCCCAACGGTACCATATCT
GATTTGACTGTGGGTGATCATAGTCAATATATTTTATTTATTTATTTTCC
TAGCATGATATGTGCCTGGTCTGTGACCACGGGCTAGACTGCGGCGGTAA
GTGAGCTAATAATGTGAGAATCAACAACAACAACAAATCATTCGTACACA
TTTGTTTGGTATTCTGGCCACCGCAGATGGTACCCCAACGGTACCATGTC
TGATCTGACTGTGGGTGATCATAGTCCATATATATATATATATATATTTT
TTTTTTCCTCCTAGCACGATATGTGCCTGGTTTGTGACCACGCGCTAGAC
TGCGGCGGTAGTGAGCTAATGTGAGAATCAACAAACAACAAAACAACATT
TTATATCCAGCCCTCCCTGTCGTCAGATCCAGATCATCATCAGCGCAGCT
AACCACCACTTTGCGGTTGATATGGTTGAATCACAACTATTAACAACTAA
CAGCAGACAATTAATTTCTGTAGTAGTCCGTTGGGGGTCCTCATCAAAAA
CCAACAGCAGCAGACTGTATCATAGAACACAGAGCACGAAGTAGCAGTAG
TAAAAATTATAAGGGGGCGGGACCTCCAAAATACCGCTCACAGGCCAGCA
CCTGTTTTTTTCCTGTATTTTGTTTGGTACTTTGGGCACCACGGATGGCC
CAACCATGTCACATATGTATCTGATTTGACTGCTGTGAGTGATCATAGTC
CATTTATTATATTTTATTTTTTTCCTCCTATCTATAGCACGATATGTACG
TGTCGCTTGTGACCACGGGCTAGACTACGGCGGTAGGCTAATGTGAGAAT
CAACAACAACAACAACAAACAATAATAACCTGTCTGCCTCTTTACAGCTC
GGTCTGGAAGCCCAGGATGATATCATATCATATTTATCAATTTATTGTAA
GTTGTTGTTAGATTTGACTGCTGTCCCGCGGTGATGAATAGATACATATC
ATACATGCATATCATTTTTTTCCTCCTAGCACGATATATATGTATGTGCC
TGGTTTGTGACCACGGGCTAGACTGACTGCGGCGGTATGGTGAGCTAGTG
TGAGAATCAACAATTTATATGATACTCCAGGCCGGGATGCCTCTCTCTAC
TCTCCTCTCTGCGGAAGCATCCTCGCACACAGCAAGCAGTAAACCGTTGG
GGGCCCTGAGATCAAATCAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACGACAACAACAACAACAACAACG
TTTACTGTTGCTGCTGTAGTATCATACACACGAGAAGTAGTAGTAAAAAG
GCCACCCCTCCCAATATAACAAATAAATAAATATGGAGTACATTCGTAGC
AGAGGTCTCTTGAGGGGAACCCTCCCCCATTCCTCACACTAGACCACTAC
TACTACTGCTACATACAGCAAACAGTAGTACTAATAATACTGCTGTAATA
CATAATAATATTATGTGTCCTAGCAGTCCTCCGTGGTTTAGGATTCGGGT
TCGGGTTCGGCTGGGTTTTGTTGGTGTGTGTCCCTCTGGGCTCCGGCGGT
CCATCAGTTCTGTAGGGCTACGGAATGGCGTTCAAAAAGACGAAAAACAG
AAAAAGAATCGTAGGCACCGGCTTCGAAGCCACAGCAAAGTGTCCTCGTC
GTGTGTGGCACAATCTGGCGGGCTACGTACCACCTCCCGGCAACAATTTC
CAGTTTAACGTATCATATATAGTCTTGCTTACTAAATAAAATTGCCTCCC
ACCTCCCCACCCACCCACTTGCGAATTCCCGACATTTAACCCGCACAGAC
AACTGTTGTAATCGTCAGTGATCCGTACTCCACACCCTTTCCCTTCTTCG
CCGGTGTTTCATACTCCGTATCAATTTTTCCTTTCCTGCTGTAATACGAA
AGGGGTTTTAGAGTGTTTAGCCCTCGGGAATTACCACACATGACTTGCCT
TTTCCCTGCAGTAGTATACTTCATGCAGCAGGTAGGTACTACTGTTGTAT
GAGTGTGTGTCGGTTGTGGCCTTTTTTACTGCTGTGGATTATGTACGTAC
GATCGTCGTGGGATTGTTTGTTTTTTCGTTATAGCGGCCCGGGACTCTTC
TTTCCTTTTTCCGTTTTCTTTCTCCGTTTTCTTTCATCTTTACAACGAAA
AAAATGTATAAACTTCGAAGTATGTATGTATGTCGTATGTGCCATTTTCG
ACCCCGTGTATCGACATGTTCACCAGCGCGTAGATGAAATCCCGTCGTTA
TAACACCCACGTTCTTGTGCTATTTTTGAAAGTGCAAACATCACATGTCC
ATACCATACCCATCTTGTATTGTACATACTTCATAGACATAATCACCCTG
CCGTTCTTGTACTTTTTTTTTCAACGTCGGCTGCGACAGATGGTAGGCGG
AGAAGGAGTAAGAGAGCGGAGTCAGCAGCGGCGCCAAACGTTAAGGTTAA
CAGCGGTACACCAAACGCCACTGGCAAGCCAGAAACACCGCCGCCATCGC
TTGCTGCCACGCCAGCAACGTCGACTGCGCCCAATGGTCGGAAGAGGAAA
AGGAAGGGAGCGGACCCAGCAGCGGCACCAATTATTGAGGCAGTCAGCGG
CACAGCGACGGCCACTGACCTCGAAAATACGGCTGCAGGGTTTGCCCCTT
CCGCGGCACCAGCGGCGGCGTCCGAGAGCGGGAGGTGTAGGAGCGGCAGC
GTGATAGTAAAATCGCGGAGAGCCACAGAGTCCAAGGGAGTTGCGTCCAT
CAAAGACAGCGACGGATGAGCAGTTGGTTGCGGGCGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig816:72900..79537-

>mRNA_P-littoralis_Contig816.14.1 ID=mRNA_P-littoralis_Contig816.14.1|Name=mRNA_P-littoralis_Contig816.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=498bp|location=Sequence derived from alignment at P-littoralis_Contig816:72900..79537- (Pylaiella littoralis U1_48)
CAGGATGGTTGGCGTACGTTCGCAAGCGTTGAGCAAGATCTAGACCTTGA
CGACAACGCTGTATCCAGCTCACTACGCAATGCATGTATCGGAGTAAAAG
GAAAACAACTCAGGAAGGACCTGTGGGACAGACAAGGGAAAAAGGGCGTG
TATCGACGCCTTAGTAGACAGAGACCACATAGGGTTTGGTGGCTTGCGTT
TTGTGGAGAGGGGAACCCTGCCCCAGATATTAGCCCTCCACGGGACTTCG
ACGAAAGGGTTAGGATGGGATTGCTGGTTGCTGGAGAGGATGCCGTAGAT
GAGGATCGCAGTGCCGCTGCTCAGGAGAAGGAGACGTGGGCGGCTGGCGG
TATCGCCAGAGCACGAGATGAGGAAGGCCGCTGCTGCTGGGGAGGAAGTG
ACCGACAAAGTTCGCCAAAGGTGATATCATCATCACCTACAGGCGTCAAC
AACAGTAGTACAGCCGACCGTGGGAACGGACTGCAGACATGCTCGTAA
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