mRNA_P-littoralis_Contig816.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig816.2.1
Unique NamemRNA_P-littoralis_Contig816.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig816.2.1 vs. uniprot
Match: A0A6H5JIB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB8_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.180e-10
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = 3 
Query:   69 KTVREVAASVRKRSKY-WLAVCQMALVAAIEEKNIAVWEAKDGGGIRLYQNGHETGLFIGN-SEDIGEFVHLLYSN-GNCTISKLQDGTYPVRNSRVTSQATS--NHFDNI 386
            KTVREV A +  + ++ +LAV Q+ALVAA++  NI VW+A  GGG+ + + G  TG F+G+   D  EF+HL+Y++ G    +    GT  VRN   ++ A +  NHF  I
Sbjct:  139 KTVREVVAGIEDQLEHDYLAVGQLALVAAVKRCNIVVWDATSGGGLLIVEVGDTTGCFVGDLCRD--EFLHLVYNDFGGYNPTTYAAGTTTVRNPSSSNVAETKFNHFSAI 247
[Close]
BLAST of mRNA_P-littoralis_Contig816.2.1 vs. uniprot
Match: A0A6H5K8T4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T4_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 7.400e-10
Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 3 
Query:   69 KTVREVAASVRKRSKY-WLAVCQMALVAAIEEKNIAVWEAKDGGGIRLYQNGHETGLFIGNSEDIGEFVHLLYSN-GNCTISKLQDGTYPVRN--SRVTSQATSNHFDNI 386
            KT+R+V A +  + ++ +LAV Q+ALVAA++  NIAVWEAK GGG+R+ + G  TG+F+G+     E++HL+Y+  G    +    GT  VR   S   ++   NH   I
Sbjct:  211 KTMRQVVAGIDDQLEHDYLAVGQLALVAAVKRCNIAVWEAKTGGGLRIVEIGDITGIFVGDLNR-DEYLHLVYNYFGGYKAATYAAGTATVRTPTSSNVAERKLNHLSAI 319
[Close]
BLAST of mRNA_P-littoralis_Contig816.2.1 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 4.920e-9
Identity = 35/75 (46.67%), Postives = 53/75 (70.67%), Query Frame = 3 
Query:   69 KTVREVAASVRKRSKY-WLAVCQMALVAAIEEKNIAVWEAKDGGGIRLYQNGHETGLFIGNSEDIGEFVHLLYSN 290
            KTVREV A +  + ++ +LAV Q+A+VAA++  NI VWEA  GGG+R+ + G  TG F+G+     EF+HL+Y++
Sbjct:  139 KTVREVVAGIEDQLEHDYLAVGQLAIVAAVKRCNIVVWEATTGGGLRIVEMGDTTGCFVGDLYR-DEFLHLVYND 212
[Close]
BLAST of mRNA_P-littoralis_Contig816.2.1 vs. uniprot
Match: A0A6H5K3B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B3_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.180e-8
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 3 
Query:   69 KTVREVAASVRKRSKY-WLAVCQMALVAAIEEKNIAVWEAKDGGGIRLYQNGHETGLFIGNSEDIGEFVHLLYSNGNCTISKLQDGTYPVRNSRVTSQATSNHFDNIW 389
            KTVREV A +  + ++ +LA+ Q+ALVAA++  NI VWEAK GGG+R+ + G  TG F+G+          LY +  CT  +          S   ++ T NHF  I+
Sbjct:  116 KTVREVVAGIEDQLEHDYLAIGQLALVAAVKRCNIVVWEAKTGGGLRIVEMGDTTGCFVGD----------LYQDEFCTWLRNPS-------SSNVAETTFNHFSAIF 206
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig816.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JIB8_9PHAE3.180e-1041.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8T4_9PHAE7.400e-1040.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L3T1_9PHAE4.920e-946.67DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5K3B3_9PHAE2.180e-837.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig816contigP-littoralis_Contig816:5520..5909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size392
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791669.0785525-CDS-P-littoralis_Contig816:5519..59091680791669.0785525-CDS-P-littoralis_Contig816:5519..5909Pylaiella littoralis U1_48CDSP-littoralis_Contig816 5520..5909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig816.2.1prot_P-littoralis_Contig816.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig816 5520..5909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig816.2.1

>prot_P-littoralis_Contig816.2.1 ID=prot_P-littoralis_Contig816.2.1|Name=mRNA_P-littoralis_Contig816.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
MLLGYPSPKRRSPARKWDRSRRERPYVKWPQVSENDRSIGWLYARWRWLQ
QSKRKTSRCGKRRTAGGSGCTRTVTRQVCSSEIPKTSANLCICCIATETA
PFRSCRTERTLCAILASRVRPRATISTISG
back to top

mRNA from alignment at P-littoralis_Contig816:5520..5909+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig816.2.1 ID=mRNA_P-littoralis_Contig816.2.1|Name=mRNA_P-littoralis_Contig816.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig816:5520..5909+ (Pylaiella littoralis U1_48)
ATGCTATTAGGCTATCCTTCACCGAAACGTCGAAGCCCCGCACGAAAGTG
GGACAGGTCAAGACGCGAAAGACCGTACGTGAAGTGGCCGCAAGTGTCAG
AAAACGATCGAAGTATTGGTTGGCTGTATGCCAGATGGCGCTGGTTGCAG
CAATCGAAGAGAAAAACATCGCGGTGTGGGAAGCGAAGGACGGCGGGGGG
ATCCGGTTGTACCAGAACGGTCACGAGACAGGTTTGTTCATCGGAAATTC
CGAAGACATCGGCGAATTTGTGCATCTGTTGTATAGCAACGGAAACTGCA
CCATTTCGAAGCTGCAGGACGGAACGTACCCTGTGCGCAATTCTCGCGTC
ACGAGTCAGGCCACGAGCAACCATTTCGACAATATCTGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig816:5520..5909+

>mRNA_P-littoralis_Contig816.2.1 ID=mRNA_P-littoralis_Contig816.2.1|Name=mRNA_P-littoralis_Contig816.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig816:5520..5909+ (Pylaiella littoralis U1_48)
ATGCTATTAGGCTATCCTTCACCGAAACGTCGAAGCCCCGCACGAAAGTG
GGACAGGTCAAGACGCGAAAGACCGTACGTGAAGTGGCCGCAAGTGTCAG
AAAACGATCGAAGTATTGGTTGGCTGTATGCCAGATGGCGCTGGTTGCAG
CAATCGAAGAGAAAAACATCGCGGTGTGGGAAGCGAAGGACGGCGGGGGG
ATCCGGTTGTACCAGAACGGTCACGAGACAGGTTTGTTCATCGGAAATTC
CGAAGACATCGGCGAATTTGTGCATCTGTTGTATAGCAACGGAAACTGCA
CCATTTCGAAGCTGCAGGACGGAACGTACCCTGTGCGCAATTCTCGCGTC
ACGAGTCAGGCCACGAGCAACCATTTCGACAATATCTGGG
back to top