mRNA_P-littoralis_Contig815.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig815.12.1
Unique NamemRNA_P-littoralis_Contig815.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig815.12.1 vs. uniprot
Match: A0A6H5KAF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF3_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.390e-9
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:    4 SVVDVAMMVRMTAEGSPSGGWSAFKNYYTPQADAEKERARQEWYDLRQGLNEAPKQFFSRVTVL 195
            SV  + ++ ++ A+GSPSGGW  F NYY P+A AEKER   +++ L   + E P+ +F R  VL
Sbjct:   84 SVTYMPILTQIIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHGLEMKVGETPQDYFGRFAVL 147
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig815.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAF3_9PHAE2.390e-943.75Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig815contigP-littoralis_Contig815:77886..78080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size197
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791668.9315758-CDS-P-littoralis_Contig815:77885..780591680791668.9315758-CDS-P-littoralis_Contig815:77885..78059Pylaiella littoralis U1_48CDSP-littoralis_Contig815 77886..78059 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791668.9444528-UTR-P-littoralis_Contig815:78059..780801680791668.9444528-UTR-P-littoralis_Contig815:78059..78080Pylaiella littoralis U1_48UTRP-littoralis_Contig815 78060..78080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig815.12.1prot_P-littoralis_Contig815.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig815 77886..78059 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig815.12.1

>prot_P-littoralis_Contig815.12.1 ID=prot_P-littoralis_Contig815.12.1|Name=mRNA_P-littoralis_Contig815.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=58bp
MMVRMTAEGSPSGGWSAFKNYYTPQADAEKERARQEWYDLRQGLNEAPKQ
FFSRVTVL
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mRNA from alignment at P-littoralis_Contig815:77886..78080-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig815.12.1 ID=mRNA_P-littoralis_Contig815.12.1|Name=mRNA_P-littoralis_Contig815.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=195bp|location=Sequence derived from alignment at P-littoralis_Contig815:77886..78080- (Pylaiella littoralis U1_48)
AACAGTGTGGTAGACGTCGCAATGATGGTTAGGATGACGGCTGAAGGTAG
TCCCAGTGGAGGGTGGTCTGCGTTCAAAAACTATTACACTCCACAGGCAG
ATGCTGAGAAAGAAAGAGCACGACAAGAATGGTATGATTTGCGCCAGGGA
CTGAACGAAGCACCAAAGCAGTTTTTCTCCAGGGTAACAGTGCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig815:77886..78080-

>mRNA_P-littoralis_Contig815.12.1 ID=mRNA_P-littoralis_Contig815.12.1|Name=mRNA_P-littoralis_Contig815.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=174bp|location=Sequence derived from alignment at P-littoralis_Contig815:77886..78080- (Pylaiella littoralis U1_48)
ATGATGGTTAGGATGACGGCTGAAGGTAGTCCCAGTGGAGGGTGGTCTGC
GTTCAAAAACTATTACACTCCACAGGCAGATGCTGAGAAAGAAAGAGCAC
GACAAGAATGGTATGATTTGCGCCAGGGACTGAACGAAGCACCAAAGCAG
TTTTTCTCCAGGGTAACAGTGCTG
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