mRNA_P-littoralis_Contig815.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig815.5.1
Unique NamemRNA_P-littoralis_Contig815.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig815.5.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.750e-26
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 1
Query:    4 VYVYANDSDLIVLGVRALLYEASERNR-QLSGVYINTDFIFKPPEMAFRRNTTAHAFLRLLHGLPTEYDPALVANPLPDATARDRLLLYAIVVGNDYAKFEHIGPAAAGRL 333
            VYVYANDSDLIVLGVR+LL++    +   L+GV I +  IF+PPE AF  +   +AFLR LHGLP  + P L A+PL +A AR RL L+A + GND+A F++IGP  A ++
Sbjct:  175 VYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIFQPPEWAFAIDAEGYAFLRQLHGLPRGHTPNLRASPLTEAAARRRLSLFATLAGNDFADFKNIGPVRAAKV 285          
BLAST of mRNA_P-littoralis_Contig815.5.1 vs. uniprot
Match: A0A6H5KVY6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY6_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.760e-26
Identity = 58/112 (51.79%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    1 NVYVYANDSDLIVLGVRALLYEASERNR-QLSGVYINTDFIFKPPEMAFRRNTTAHAFLRLLHGLPTEYDPALVANPLPDATARDRLLLYAIVVGNDYAKFEHIGPAAAGRL 333
            NVYVYANDSDL VLGVR LL E  +  R +L G  +    +F+P   +F R+  AH +LR LHG+ T  D  L   PLP+ TAR RL+L+A++VGND+AKF+++GP  A RL
Sbjct:  380 NVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTARRRLVLFAMIVGNDFAKFKNVGPVTAARL 491          
BLAST of mRNA_P-littoralis_Contig815.5.1 vs. uniprot
Match: D7G0K2_ECTSI (Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G0K2_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 3.250e-26
Identity = 59/112 (52.68%), Postives = 75/112 (66.96%), Query Frame = 1
Query:    1 NVYVYANDSDLIVLGVRALLYEASERNR-QLSGVYINTDFIFKPPEMAFRRNTTAHAFLRLLHGLPTEYDPALVANPLPDATARDRLLLYAIVVGNDYAKFEHIGPAAAGRL 333
            NVYVYANDSDL VLGVR LL E  +  R +L G  +    +F+P   +F R+  AH +LR LHG+    D  L   PLP+ TAR RLLL+AI+VGND+AKF+++GP  A RL
Sbjct:  135 NVYVYANDSDLTVLGVRDLLVEVVKNARGELVGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHQPVDEGLDYTPLPEPTARRRLLLFAIIVGNDFAKFKNVGPVTAARL 246          
BLAST of mRNA_P-littoralis_Contig815.5.1 vs. uniprot
Match: D7G4G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G5_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 7.670e-25
Identity = 56/112 (50.00%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    1 NVYVYANDSDLIVLGVRALLYEASERNR-QLSGVYINTDFIFKPPEMAFRRNTTAHAFLRLLHGLPTEYDPALVANPLPDATARDRLLLYAIVVGNDYAKFEHIGPAAAGRL 333
            NVYVYANDSDL VLGVR  L E  +  R +L G  +    +F+P   +F R+  AH +LR LHG+    D  L   PLP+ T R RLLL+A++VGND+AKF+++GP  A RL
Sbjct:  108 NVYVYANDSDLTVLGVRDRLVEVVKNARGELVGRSVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHQPVDEGLDYTPLPEPTGRRRLLLFAVIVGNDFAKFKNVGPVTAARL 219          
BLAST of mRNA_P-littoralis_Contig815.5.1 vs. uniprot
Match: D7FZU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU5_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.840e-21
Identity = 53/112 (47.32%), Postives = 68/112 (60.71%), Query Frame = 1
Query:    1 NVYVYANDSDLIVLGVRALLYEASERNR-QLSGVYINTDFIFKPPEMAFRRNTTAHAFLRLLHGLPTEYDPALVANPLPDATARDRLLLYAIVVGNDYAKFEHIGPAAAGRL 333
            NVYVYANDSD  VLGV  LL E  +  R +L G  +    +F+P   +F R+      LR LHG+    D      PLP+ TAR RLLL+AI+VG D+AKF+++GP  A RL
Sbjct:  108 NVYVYANDSDFTVLGVLDLLVEVVKNARGELVGRCVRQRLLFQPTTWSFLRSGDVRGRLRQLHGIHQPVDEGFDYTPLPEPTARRRLLLFAIIVGKDFAKFKNVGPVTAARL 219          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig815.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KFX7_9PHAE1.750e-2653.15Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5KVY6_9PHAE1.760e-2651.79Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G0K2_ECTSI3.250e-2652.68Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=... [more]
D7G4G5_ECTSI7.670e-2550.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZU5_ECTSI2.840e-2147.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig815contigP-littoralis_Contig815:9066..9413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G0K2
PFAMsXPG_I,XPG_N
Model size348
Max annot lvl2759|Eukaryota
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.33e-27
EggNOG OGsCOG0258@1|root,KOG2518@2759|Eukaryota
Description5'-3' exodeoxyribonuclease activity
Cds size348
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791668.6370842-CDS-P-littoralis_Contig815:9065..94131680791668.6370842-CDS-P-littoralis_Contig815:9065..9413Pylaiella littoralis U1_48CDSP-littoralis_Contig815 9066..9413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig815.5.1prot_P-littoralis_Contig815.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig815 9066..9413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig815.5.1

>prot_P-littoralis_Contig815.5.1 ID=prot_P-littoralis_Contig815.5.1|Name=mRNA_P-littoralis_Contig815.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
NVYVYANDSDLIVLGVRALLYEASERNRQLSGVYINTDFIFKPPEMAFRR
NTTAHAFLRLLHGLPTEYDPALVANPLPDATARDRLLLYAIVVGNDYAKF
EHIGPAAAGRLLQSLP
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mRNA from alignment at P-littoralis_Contig815:9066..9413+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig815.5.1 ID=mRNA_P-littoralis_Contig815.5.1|Name=mRNA_P-littoralis_Contig815.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig815:9066..9413+ (Pylaiella littoralis U1_48)
AACGTGTATGTTTACGCGAACGACTCTGATCTCATCGTCTTGGGCGTAAG GGCGTTGCTATATGAAGCGTCCGAGCGCAACCGCCAGCTGAGCGGAGTGT ACATCAACACTGACTTCATTTTCAAACCTCCAGAGATGGCATTCAGAAGA AACACTACAGCTCATGCGTTCCTTCGCCTGCTGCACGGCCTGCCTACAGA GTACGACCCGGCATTGGTAGCCAACCCTCTGCCCGACGCGACTGCTCGAG ATCGCCTACTTCTTTACGCCATTGTCGTGGGTAACGACTACGCAAAATTC GAGCACATTGGGCCGGCTGCGGCGGGGAGATTACTACAGTCCCTGCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig815:9066..9413+

>mRNA_P-littoralis_Contig815.5.1 ID=mRNA_P-littoralis_Contig815.5.1|Name=mRNA_P-littoralis_Contig815.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig815:9066..9413+ (Pylaiella littoralis U1_48)
AACGTGTATGTTTACGCGAACGACTCTGATCTCATCGTCTTGGGCGTAAG
GGCGTTGCTATATGAAGCGTCCGAGCGCAACCGCCAGCTGAGCGGAGTGT
ACATCAACACTGACTTCATTTTCAAACCTCCAGAGATGGCATTCAGAAGA
AACACTACAGCTCATGCGTTCCTTCGCCTGCTGCACGGCCTGCCTACAGA
GTACGACCCGGCATTGGTAGCCAACCCTCTGCCCGACGCGACTGCTCGAG
ATCGCCTACTTCTTTACGCCATTGTCGTGGGTAACGACTACGCAAAATTC
GAGCACATTGGGCCGGCTGCGGCGGGGAGATTACTACAGTCCCTGCCT
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