mRNA_P-littoralis_Contig815.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig815.19.1
Unique NamemRNA_P-littoralis_Contig815.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig815.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig815contigP-littoralis_Contig815:105106..105679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size531
Hectar predicted targeting categorysignal anchor
Exons2
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791668.5247588-UTR-P-littoralis_Contig815:105105..1052361680791668.5247588-UTR-P-littoralis_Contig815:105105..105236Pylaiella littoralis U1_48UTRP-littoralis_Contig815 105106..105236 -
1680791668.559266-UTR-P-littoralis_Contig815:105648..1056791680791668.559266-UTR-P-littoralis_Contig815:105648..105679Pylaiella littoralis U1_48UTRP-littoralis_Contig815 105649..105679 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791668.537532-CDS-P-littoralis_Contig815:105236..1053981680791668.537532-CDS-P-littoralis_Contig815:105236..105398Pylaiella littoralis U1_48CDSP-littoralis_Contig815 105237..105398 -
1680791668.5492096-CDS-P-littoralis_Contig815:105441..1056481680791668.5492096-CDS-P-littoralis_Contig815:105441..105648Pylaiella littoralis U1_48CDSP-littoralis_Contig815 105442..105648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig815.19.1prot_P-littoralis_Contig815.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig815 105237..105648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig815.19.1

>prot_P-littoralis_Contig815.19.1 ID=prot_P-littoralis_Contig815.19.1|Name=mRNA_P-littoralis_Contig815.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp
MPVCACVCVMCDAPRKRYIYLRGGQEVSMLCRGCVLVVWFCPLTVVSTRM
AVPCCLVLLFGLFGLATNDMPLDRMGHSFWTNGGVIHKIRRVVGVYPQGY
RTNGGIRVDRWAAWRCEAGIRA*
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mRNA from alignment at P-littoralis_Contig815:105106..105679-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig815.19.1 ID=mRNA_P-littoralis_Contig815.19.1|Name=mRNA_P-littoralis_Contig815.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=574bp|location=Sequence derived from alignment at P-littoralis_Contig815:105106..105679- (Pylaiella littoralis U1_48)
GTTTGCCTGCGTTTGCGTGGCGCCTGTGTGTATGCCTGTGTGTGCTTGTG
TGTGTGTCATGTGTGACGCACCTCGAAAGAGATATATATACCTACGGGGA
GGCCAAGAGGTCTCGATGTTGTGCCGTGGGTGTGTGTTGGTTGTTTGGTT
CTGTCCGTTGACAGTGGTCTCCACGCGCATGGCTGTTCCATGTTGTTTGG
TTCTTCTATTCGGTCTGTTCGGGCTGGCAACAAATGACGTGTATGTGTGG
TAAATGGTTTCCAACATGGACAAATGGGGAGATGCCCTTGGACAGAATGG
GGCATAGTTTTTGGACAAACGGGGGTGTAATACATAAAATTAGAAGAGTT
GTCGGGGTATACCCCCAGGGTTACCGGACAAACGGGGGCATACGGGTCGA
CCGGTGGGCGGCTTGGCGCTGTGAGGCAGGGATACGTGCCTGAAAACCCG
CGGAAGCCGTCGCATAGGCTTGGCGTGGTGCCTGAGCGAGCTGTCTAGGC
GCTAGAATGGAATTCAGAGGGGTTTGGGCTGGTTCGCACGCAGCCTCCGC
GGGCACGTTTTTGGTATAGCTCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig815:105106..105679-

>mRNA_P-littoralis_Contig815.19.1 ID=mRNA_P-littoralis_Contig815.19.1|Name=mRNA_P-littoralis_Contig815.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig815:105106..105679- (Pylaiella littoralis U1_48)
ATGCCTGTGTGTGCTTGTGTGTGTGTCATGTGTGACGCACCTCGAAAGAG
ATATATATACCTACGGGGAGGCCAAGAGGTCTCGATGTTGTGCCGTGGGT
GTGTGTTGGTTGTTTGGTTCTGTCCGTTGACAGTGGTCTCCACGCGCATG
GCTGTTCCATGTTGTTTGGTTCTTCTATTCGGTCTGTTCGGGCTGGCAAC
AAATGACATGCCCTTGGACAGAATGGGGCATAGTTTTTGGACAAACGGGG
GTGTAATACATAAAATTAGAAGAGTTGTCGGGGTATACCCCCAGGGTTAC
CGGACAAACGGGGGCATACGGGTCGACCGGTGGGCGGCTTGGCGCTGTGA
GGCAGGGATACGTGCCTGA
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