mRNA_P-littoralis_Contig815.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig815.7.1
Unique NamemRNA_P-littoralis_Contig815.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig815.7.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 8.820e-17
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 2 
Query:    2 VVRESRLEDSQEARLNVMRKLQTAHNIFQHAVVWNPIADTLQHFSGSAPAQTIARDTGTLALSSVARRIAWGEVSPSTGLEW 247
            VV++S+ E++  A      KL+ AHN+F +AVVW+P+ +TL+HFSG+A +  I +DTGTL  SSVA  IA GEVSP+TG  W
Sbjct:  314 VVQDSKEEETPAALEEAEEKLRRAHNMFHNAVVWDPLKNTLRHFSGAASSLAITKDTGTLEFSSVASGIASGEVSPTTGQVW 395
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BLAST of mRNA_P-littoralis_Contig815.7.1 vs. uniprot
Match: D7FQM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM4_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 3.930e-14
Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = 2 
Query:    2 VVRESRLEDSQEARLNVMRKLQTAHNIFQHAVVWNPIADTLQHFSGSAPAQTIARDTGTLALSSVARRIAWGEVSPSTGLEW 247
            VV++S+ E++  A      KL+ + N+F +AVVW+P+ +TL+HFS +A +  I +DTGTL  SSVA  IA GEVSP+TG  W
Sbjct:   91 VVQDSKEEETPAALEEAEEKLRRSQNMFHNAVVWDPLKNTLRHFSCAASSLAITKDTGTLEFSSVASGIASGEVSPTTGQVW 172
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BLAST of mRNA_P-littoralis_Contig815.7.1 vs. uniprot
Match: D7G3Y3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y3_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 9.540e-12
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 2 
Query:   80 IFQHAVVWNPIADTLQHFSGSAPAQTIARDTGTLALSSVARRIAWGEVSPSTGLEW 247
            +F +AVVW+P+ +TL+HFSG+A +  I  DTGTL  SSVA  IA GEVSP+TG  W
Sbjct:    1 MFHNAVVWDPLKNTLRHFSGAASSLAITNDTGTLEFSSVASGIASGEVSPTTGQVW 56
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig815.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KFX7_9PHAE8.820e-1752.44Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FQM4_ECTSI3.930e-1448.78Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G3Y3_ECTSI9.540e-1258.93Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig815contigP-littoralis_Contig815:9491..10136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size255
Hectar predicted targeting categoryother localisation
Exons2
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791668.3777046-CDS-P-littoralis_Contig815:9490..96631680791668.3777046-CDS-P-littoralis_Contig815:9490..9663Pylaiella littoralis U1_48CDSP-littoralis_Contig815 9491..9663 +
1680791668.390234-CDS-P-littoralis_Contig815:10055..101341680791668.390234-CDS-P-littoralis_Contig815:10055..10134Pylaiella littoralis U1_48CDSP-littoralis_Contig815 10056..10134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig815.7.1prot_P-littoralis_Contig815.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig815 9491..10134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig815.7.1

>prot_P-littoralis_Contig815.7.1 ID=prot_P-littoralis_Contig815.7.1|Name=mRNA_P-littoralis_Contig815.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=84bp
RCPRVEIGGQSGSEVECDEEATNSSQHISTRRRVEPHCGYSTALLRVGSG
ANHRQRHRNTGVVIGSPQNSLGRGFSKYWARVGT
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mRNA from alignment at P-littoralis_Contig815:9491..10136+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig815.7.1 ID=mRNA_P-littoralis_Contig815.7.1|Name=mRNA_P-littoralis_Contig815.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=646bp|location=Sequence derived from alignment at P-littoralis_Contig815:9491..10136+ (Pylaiella littoralis U1_48)
CGTTGTCCGAGAGTCGAGATTGGAGGACAGTCAGGAAGCGAGGTTGAATG
TGATGAGGAAGCTACAAACAGCTCACAACATATTTCAACACGCCGTCGTG
TGGAACCCCATTGCGGATACTCTACAGCACTTCTCCGGGTCGGCTCCGGC
GCAAACCATCGCCAGAGACACAGGTCAGGTTGACTGCAACAAACCTCGCT
GCTGCCTACATTGTTACCTGCAGCGGTCTACCTCCGTAACGAATAATATC
GCACGACATTTACACCCCTTTGTACGCCGTCACGAACATGAACCGTTGTC
ATGTCGTAGGGGCGACATCGCTTTGAAACGACAAAATGGCCACTCTCATG
GCGGCATTTAGGTGCAGAAGGGTAAGTGGATCACTTGGGCAAGCGTTTCT
TTCGAGCGCCTGTAGCCCCCCCATCGTGTTTTGTTCCCGACAGGTACAAG
TAATCACATGTTGCCAAGTAAAACGCCACGTATCGAGCATCATCCAAGTT
TCAAGTACGATAACGCAGCCCGATTGCTTCTTTTACACGTCACGTTTCGC
AATTGTTTGGACCAGGAACACTGGCGTTGTCATCGGTAGCCCGCAGAATA
GCTTGGGGCGAGGTTTCTCCAAGTACTGGGCTAGAGTGGGTACCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig815:9491..10136+

>mRNA_P-littoralis_Contig815.7.1 ID=mRNA_P-littoralis_Contig815.7.1|Name=mRNA_P-littoralis_Contig815.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=252bp|location=Sequence derived from alignment at P-littoralis_Contig815:9491..10136+ (Pylaiella littoralis U1_48)
CGTTGTCCGAGAGTCGAGATTGGAGGACAGTCAGGAAGCGAGGTTGAATG
TGATGAGGAAGCTACAAACAGCTCACAACATATTTCAACACGCCGTCGTG
TGGAACCCCATTGCGGATACTCTACAGCACTTCTCCGGGTCGGCTCCGGC
GCAAACCATCGCCAGAGACACAGGAACACTGGCGTTGTCATCGGTAGCCC
GCAGAATAGCTTGGGGCGAGGTTTCTCCAAGTACTGGGCTAGAGTGGGTA
CC
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